MELO3C006799 (gene) Melon (DHL92) v3.5.1

NameMELO3C006799
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionB-block binding subunit of TFIIIC
Locationchr6 : 6099955 .. 6100600 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTAAGATTTTACAGTCCGAACGGCGTTCGACCCAATTCTCTGCTTCTCTCCGCCCACTCCCGGGGTCATCGGAAAACAATGTTCCTCCCCTCAACACTCACAACCATACTTTTCGCCTGCTGACTTCGAACCATGGACGCCGTCGTCTCCTCTGCCGTCGAAGAAATTTGTTCACTCGGTCAAAACGGACTCGCTCTCTGCAATCTATGGTCCAAGCTCGAACCGTCTCTCTCAGCTTCCGGCCTAGACCTCTCCAATGGCGTCAAGGCCGCCGTCTGGACCCAACTCCTCCGCGTCCCATCTCTGCAATTCGAAGCTGGCAAGGGGCTCTATGATGCTAAGGATCCATCTATTCAGTCCTTCGAAGCTGCTGAAAGGCTGAATTTGAAGGTTGTGGCTAAAGTGCACCTGAGGGATAGTTTTGTAGGGCTTTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAGAGACGAGTTCTTGAGCGACTCGCAGGTGCTAGGTACGTTACGACTATCCTTGTTTGCCTCACTCTGTCTTCTGCATTTGATGTGAACGTGTATATATATAATGATTTATGTCATGAGATGGTTTTCTGTTTACGTTTATGGGGCTCTTTTATGGATAAATATGATTAA

mRNA sequence

AAATTTAAGATTTTACAGTCCGAACGGCGTTCGACCCAATTCTCTGCTTCTCTCCGCCCACTCCCGGGGTCATCGGAAAACAATGTTCCTCCCCTCAACACTCACAACCATACTTTTCGCCTGCTGACTTCGAACCATGGACGCCGTCGTCTCCTCTGCCGTCGAAGAAATTTGTTCACTCGGTCAAAACGGACTCGCTCTCTGCAATCTATGGTCCAAGCTCGAACCGTCTCTCTCAGCTTCCGGCCTAGACCTCTCCAATGGCGTCAAGGCCGCCGTCTGGACCCAACTCCTCCGCGTCCCATCTCTGCAATTCGAAGCTGGCAAGGGGCTCTATGATGCTAAGGATCCATCTATTCAGTCCTTCGAAGCTGCTGAAAGGCTGAATTTGAAGGTTGTGGCTAAAGTGCACCTGAGGGATAGTTTTGTAGGGCTTTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAGAGACGAGTTCTTGAGCGACTCGCAGGTGCTAGGTACGTTACGACTATCCTTGTTTGCCTCACTCTGTCTTCTGCATTTGATGTGAACGTGTATATATATAATGATTTATGTCATGAGATGGTTTTCTGTTTACGTTTATGGGGCTCTTTTATGGATAAATATGATTAA

Coding sequence (CDS)

ATGGACGCCGTCGTCTCCTCTGCCGTCGAAGAAATTTGTTCACTCGGTCAAAACGGACTCGCTCTCTGCAATCTATGGTCCAAGCTCGAACCGTCTCTCTCAGCTTCCGGCCTAGACCTCTCCAATGGCGTCAAGGCCGCCGTCTGGACCCAACTCCTCCGCGTCCCATCTCTGCAATTCGAAGCTGGCAAGGGGCTCTATGATGCTAAGGATCCATCTATTCAGTCCTTCGAAGCTGCTGAAAGGCTGAATTTGAAGGTTGTGGCTAAAGTGCACCTGAGGGATAGTTTTGTAGGGCTTTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAGAGACGAGTTCTTGAGCGACTCGCAGGTGCTAGGTACGTTACGACTATCCTTGTTTGCCTCACTCTGTCTTCTGCATTTGATGTGAACGTGTATATATATAATGATTTATGTCATGAGATGGTTTTCTGTTTACGTTTATGGGGCTCTTTTATGGATAAATATGATTAA

Protein sequence

MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQFEAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLERLAGARYVTTILVCLTLSSAFDVNVYIYNDLCHEMVFCLRLWGSFMDKYD*
BLAST of MELO3C006799 vs. TrEMBL
Match: A0A0A0LAZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G174540 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MDA+VSSAVEEICSLGQNGLAL NLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF
Sbjct: 1   MDALVSSAVEEICSLGQNGLALSNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           E GKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  EVGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAGAR 126
           LAGAR
Sbjct: 121 LAGAR 125

BLAST of MELO3C006799 vs. TrEMBL
Match: F6HXX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01430 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD++V +A+EEICS G NGLAL +LW  L  +LS++GLDLS+GVKAA+W  LL+ P L+F
Sbjct: 1   MDSIVFAALEEICSQGANGLALQSLWPNLHAALSSAGLDLSSGVKAAIWANLLKTPGLEF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVR-SASSNMSAHQRRVLE 120
           ++     +A DP+IQS    E+LNLK+VA  HLRDSFVGLY+ + SA + +SA QRRVLE
Sbjct: 61  QSRNVSRNADDPAIQSVVQCEKLNLKIVAAEHLRDSFVGLYDAKASAVTGISAVQRRVLE 120

Query: 121 RLAGAR 126
           RLA AR
Sbjct: 121 RLAIAR 126

BLAST of MELO3C006799 vs. TrEMBL
Match: W9SG49_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002610 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-29
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD+++SSA+EEICS G  G++L  LWS ++PSL+AS LDLS GVK A+WT LL VP+L+F
Sbjct: 1   MDSIISSALEEICSHGDAGVSLRALWSTIKPSLAASSLDLSPGVKQALWTGLLGVPALRF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
                 + A D S+QSFEAAE LN+K+VA+  LRD+F+GLYN   A++ +   QRR L+R
Sbjct: 61  HGQSATFVASDNSVQSFEAAENLNVKLVAEERLRDNFLGLYNAPPANAAIPLPQRRALQR 120

Query: 121 LAGAR 126
           LA AR
Sbjct: 121 LAVAR 125

BLAST of MELO3C006799 vs. TrEMBL
Match: M5X9V0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000094mg PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-28
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD++++SA+ EICS  QNGL L  LW +L+PSLS+S LDLS   K A+W  L  VP+L+F
Sbjct: 1   MDSILNSALAEICSELQNGLPLQTLWPRLDPSLSSSNLDLSPHFKQALWDALRSVPTLKF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           +A    Y   DPSI SFE AE+LNLK+VA   LRD+F+GLYNVRSA++++S  QR  LER
Sbjct: 61  DAKNAPYGPADPSILSFEDAEKLNLKLVADEGLRDNFMGLYNVRSANASLSKIQRMALER 120

Query: 121 LAGAR 126
           L  AR
Sbjct: 121 LVTAR 125

BLAST of MELO3C006799 vs. TrEMBL
Match: A0A068TKI8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013920001 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD+VV SA+EEICS G  GL+L NLW +L  SLSA GL L   VKAA+W+ LL VP L+F
Sbjct: 1   MDSVVHSAIEEICSQGGGGLSLLNLWPRLHQSLSAHGLPLCPNVKAALWSNLLNVPGLRF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           E    +YD +D  I S E  E++N+K+VA   LR +F+G+ ++ ++ S ++   RR LER
Sbjct: 61  EVEGDVYDCQDALINSLEKCEQMNMKIVASERLRSNFIGITDIEASDSKINEKHRRTLER 120

Query: 121 LAGAR 126
           LA AR
Sbjct: 121 LAIAR 125

BLAST of MELO3C006799 vs. TAIR10
Match: AT1G17450.2 (AT1G17450.2 B-block binding subunit of TFIIIC)

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-26
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD++V +A+EEIC  G  G+ L +LWS+L P        LS  VKA VW  LL VP LQF
Sbjct: 1   MDSIVCTALEEICCQGNTGIPLVSLWSRLSPP------PLSPSVKAHVWRNLLAVPQLQF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           +A   +Y+  D SIQ  E A RL+L++ A   LR +FVGLY+ +S ++ +SA QRRVLER
Sbjct: 61  KAKNTVYEPSDASIQQLEEALRLDLRIFANEKLRGNFVGLYDAQSNNTTISAIQRRVLER 119

Query: 121 LAGAR 126
           LA AR
Sbjct: 121 LAVAR 119

BLAST of MELO3C006799 vs. TAIR10
Match: AT1G59453.1 (AT1G59453.1 B-block binding subunit of TFIIIC)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD+++S+A++EICS G  G+ L  LWS+L P        LS+ +K  VW  LL +P LQF
Sbjct: 1   MDSIISTALDEICSQGNTGIPLVTLWSRLSP--------LSSSIKTHVWRNLLTIPQLQF 60

Query: 61  EAGKG-LYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLE 120
           +  K  +Y + D SIQ+ + A RL+L++VA  +LR +FVGLY+ +S ++ + A QRRVLE
Sbjct: 61  KTKKNTVYGSSDTSIQNLDDALRLDLRIVANENLRANFVGLYDTQSNNTTIPAIQRRVLE 118

Query: 121 RLAGAR 126
           RLA AR
Sbjct: 121 RLAIAR 118

BLAST of MELO3C006799 vs. NCBI nr
Match: gi|659077179|ref|XP_008439073.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103483968 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 2.8e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF
Sbjct: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAGAR 126
           LAGAR
Sbjct: 121 LAGAR 125

BLAST of MELO3C006799 vs. NCBI nr
Match: gi|778679278|ref|XP_011651113.1| (PREDICTED: uncharacterized protein LOC101216506 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 2.6e-59
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MDA+VSSAVEEICSLGQNGLAL NLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF
Sbjct: 1   MDALVSSAVEEICSLGQNGLALSNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           E GKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  EVGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAGAR 126
           LAGAR
Sbjct: 121 LAGAR 125

BLAST of MELO3C006799 vs. NCBI nr
Match: gi|297743016|emb|CBI35883.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD++V +A+EEICS G NGLAL +LW  L  +LS++GLDLS+GVKAA+W  LL+ P L+F
Sbjct: 1   MDSIVFAALEEICSQGANGLALQSLWPNLHAALSSAGLDLSSGVKAAIWANLLKTPGLEF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVR-SASSNMSAHQRRVLE 120
           ++     +A DP+IQS    E+LNLK+VA  HLRDSFVGLY+ + SA + +SA QRRVLE
Sbjct: 61  QSRNVSRNADDPAIQSVVQCEKLNLKIVAAEHLRDSFVGLYDAKASAVTGISAVQRRVLE 120

Query: 121 RLAGAR 126
           RLA AR
Sbjct: 121 RLAIAR 126

BLAST of MELO3C006799 vs. NCBI nr
Match: gi|731401854|ref|XP_010654444.1| (PREDICTED: uncharacterized protein LOC100267761 [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 74/126 (58.73%), Postives = 96/126 (76.19%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD++V +A+EEICS G NGLAL +LW  L  +LS++GLDLS+GVKAA+W  LL+ P L+F
Sbjct: 1   MDSIVFAALEEICSQGANGLALQSLWPNLHAALSSAGLDLSSGVKAAIWANLLKTPGLEF 60

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVR-SASSNMSAHQRRVLE 120
           ++     +A DP+IQS    E+LNLK+VA  HLRDSFVGLY+ + SA + +SA QRRVLE
Sbjct: 61  QSRNVSRNADDPAIQSVVQCEKLNLKIVAAEHLRDSFVGLYDAKASAVTGISAVQRRVLE 120

Query: 121 RLAGAR 126
           RLA AR
Sbjct: 121 RLAIAR 126

BLAST of MELO3C006799 vs. NCBI nr
Match: gi|1009176911|ref|XP_015869684.1| (PREDICTED: uncharacterized protein LOC107406981 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 7.5e-30
Identity = 73/125 (58.40%), Postives = 95/125 (76.00%), Query Frame = 1

Query: 1   MDAVVSSAVEEICSLGQNGLALCNLWSKLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60
           MD+++SSA+EEIC  GQ G++L  LWS+L PSLS++ LDLS  +K AVWT LL VP++QF
Sbjct: 17  MDSIISSALEEICLEGQAGVSLRTLWSRLNPSLSSANLDLSPALKQAVWTGLLGVPTIQF 76

Query: 61  EAGKGLYDAKDPSIQSFEAAERLNLKVVAKVHLRDSFVGLYNVRSASSNMSAHQRRVLER 120
           +A K  Y A D SIQSF+ AE+LNLK+VA+   RD F+GLYNV SA+ ++   QRR L+R
Sbjct: 77  QANKACYGASDLSIQSFQDAEKLNLKLVAEERFRD-FLGLYNVHSANVSIPEKQRRSLQR 136

Query: 121 LAGAR 126
           LA AR
Sbjct: 137 LATAR 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LAZ9_CUCSA1.8e-5997.60Uncharacterized protein OS=Cucumis sativus GN=Csa_3G174540 PE=4 SV=1[more]
F6HXX9_VITVI1.8e-3058.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01430 PE=4 SV=... [more]
W9SG49_9ROSA3.4e-2956.00Uncharacterized protein OS=Morus notabilis GN=L484_002610 PE=4 SV=1[more]
M5X9V0_PRUPE2.2e-2856.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000094mg PE=4 SV=1[more]
A0A068TKI8_COFCA4.6e-2650.40Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013920001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G17450.26.9e-2650.40 B-block binding subunit of TFIIIC[more]
AT1G59453.11.3e-2446.83 B-block binding subunit of TFIIIC[more]
Match NameE-valueIdentityDescription
gi|659077179|ref|XP_008439073.1|2.8e-61100.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103483968 [Cucumis me... [more]
gi|778679278|ref|XP_011651113.1|2.6e-5997.60PREDICTED: uncharacterized protein LOC101216506 [Cucumis sativus][more]
gi|297743016|emb|CBI35883.3|2.6e-3058.73unnamed protein product [Vitis vinifera][more]
gi|731401854|ref|XP_010654444.1|2.6e-3058.73PREDICTED: uncharacterized protein LOC100267761 [Vitis vinifera][more]
gi|1009176911|ref|XP_015869684.1|7.5e-3058.40PREDICTED: uncharacterized protein LOC107406981 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006799T1MELO3C006799T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15180GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1coord: 1..126
score: 2.1
NoneNo IPR availablePANTHERPTHR15180:SF1GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1coord: 1..126
score: 2.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006799Cla021876Watermelon (97103) v1mewmB461
The following gene(s) are paralogous to this gene:

None