MELO3C006768 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006768
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description40S ribosomal protein S19
Locationchr6 : 5815093 .. 5815266 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGCGATATAGAAGCTTTGGAAAACATATGTGACAGAACCACGGGAGTTGTAGAACAAATTATTCAGCATATCCAAGAACTCAATGTTGCCGACACAGATCGTAGACACAAGCGATGTAGACGACGACAGCAAGACAATGACGTCGTAGAGGGTGACGAAGATAATTGA

mRNA sequence

ATGGAACGCGATATAGAAGCTTTGGAAAACATATGTGACAGAACCACGGGAGTTGTAGAACAAATTATTCAGCATATCCAAGAACTCAATGTTGCCGACACAGATCGTAGACACAAGCGATGTAGACGACGACAGCAAGACAATGACGTCGTAGAGGGTGACGAAGATAATTGA

Coding sequence (CDS)

ATGGAACGCGATATAGAAGCTTTGGAAAACATATGTGACAGAACCACGGGAGTTGTAGAACAAATTATTCAGCATATCCAAGAACTCAATGTTGCCGACACAGATCGTAGACACAAGCGATGTAGACGACGACAGCAAGACAATGACGTCGTAGAGGGTGACGAAGATAATTGA

Protein sequence

MERDIEALENICDRTTGVVEQIIQHIQELNVADTDRRHKRCRRRQQDNDVVEGDEDN*
Homology
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BLAST of MELO3C006768 vs. NCBI nr
Match: gi|659119282|ref|XP_008459571.1| (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 1   MERDIEALENICDRTTGVVEQIIQHIQELNVADTDRRHKRCRRRQQDN----DVVEGDED 58
           ME +++ L ++CD+    +E IIQ  + LNVADTDRR  R +RR+QDN    D+VEGD+D
Sbjct: 441 MEHNLQDLGSMCDQFLENIEHIIQQTKRLNVADTDRRCIRRKRRRQDNNVVDDIVEGDQD 500

The following BLAST results are available for this feature:
BLAST of MELO3C006768 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119282|ref|XP_008459571.1|8.8e-0750.82PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006768T1MELO3C006768T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006768Cucurbita pepo (Zucchini)cpemeB585
MELO3C006768Cucurbita pepo (Zucchini)cpemeB813
MELO3C006768Bottle gourd (USVL1VR-Ls)lsimeB379
MELO3C006768Cucumber (Gy14) v2cgybmeB200
MELO3C006768Silver-seed gourdcarmeB0280
MELO3C006768Silver-seed gourdcarmeB0693
MELO3C006768Cucumber (Chinese Long) v3cucmeB236
MELO3C006768Watermelon (97103) v2mewmbB434
MELO3C006768Wax gourdmewgoB529
MELO3C006768Cucumber (Gy14) v1cgymeB439
MELO3C006768Cucurbita maxima (Rimu)cmameB242
MELO3C006768Cucurbita maxima (Rimu)cmameB763
MELO3C006768Cucurbita moschata (Rifu)cmomeB230
MELO3C006768Cucurbita moschata (Rifu)cmomeB755
MELO3C006768Wild cucumber (PI 183967)cpimeB230
MELO3C006768Cucumber (Chinese Long) v2cumeB236
MELO3C006768Watermelon (Charleston Gray)mewcgB427
MELO3C006768Watermelon (97103) v1mewmB461