MELO3C006753 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006753
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chromatin remodelling complex ATPase chain isw-1
Location	chr6 : 5706082 .. 5706860 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACAGTCATCCGATTTGAAATATAAACCCGAATTGAGAAGTTGAATCCGACACCGTCCCGCCCCGAAGTTCACTTCAAAATTCATTTCGTTTTCATCGAACATTCGATCATAGCGGCGATTGGAGGAAGGGGTTGGTTCGCGCCTTTCTCCAAGAAAAATGGAATTTGGAGACGAAGATGATGACTGGAACTTGACCCCCGAAGAACTTGATTCCCTCGAGAGAGACGCTGTTCAGAAGATTGCTCAACTTCAAAATTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTCAATGCCTTTGTTCCTTGCTCTGCTTCTAATCAACACCCCCATCAGTCTTGTCAATCCAACACCCACCTTAATTCGAGCGTCAATAAGGCCAAAATCAGCAACCCAAATGCCCATGACTCTGCATTTCAACCTTCCCAACTCAATCCCGTACTGGGTTCTCGTTCTCGCGCGGTTTGTGCTTAATCCATGCTTTGATTGTGGTTTTGTAGTGTGTTTTTGTGGTTTTAGGGGTTCCATTTCTGTCATTGTAGCTTCCTAATCTTATACCATTTGTTACTATACAGGTGGAGAACGCCTCTCCCTTGGCCGGAGTATTACCTTCATCAGCTGCGGCAAAAGAACATGTTGGTAAGCTTCGTAGTTTCACTCTCTCTTTCCACTTCGATGTATGATCGTCTCTTTTACTGTAGTTAGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCAGAAGGCTTAGGAAATGATTACATCCCTGCACGTATTTGA

mRNA sequence

CTAACAGTCATCCGATTTGAAATATAAACCCGAATTGAGAAGTTGAATCCGACACCGTCCCGCCCCGAAGTTCACTTCAAAATTCATTTCGTTTTCATCGAACATTCGATCATAGCGGCGATTGGAGGAAGGGGTTGGTTCGCGCCTTTCTCCAAGAAAAATGGAATTTGGAGACGAAGATGATGACTGGAACTTGACCCCCGAAGAACTTGATTCCCTCGAGAGAGACGCTGTTCAGAAGATTGCTCAACTTCAAAATTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTCAATGCCTTTGTTCCTTGCTCTGCTTCTAATCAACACCCCCATCAGTCTTGTCAATCCAACACCCACCTTAATTCGAGCGTCAATAAGGCCAAAATCAGCAACCCAAATGCCCATGACTCTGCATTTCAACCTTCCCAACTCAATCCCGTACTGGGTTCTCGTTCTCGCGCGGTGGAGAACGCCTCTCCCTTGGCCGGAGTATTACCTTCATCAGCTGCGGCAAAAGAACATGTTGAAGGCTTAGGAAATGATTACATCCCTGCACGTATTTGA

Coding sequence (CDS)

ATGGAATTTGGAGACGAAGATGATGACTGGAACTTGACCCCCGAAGAACTTGATTCCCTCGAGAGAGACGCTGTTCAGAAGATTGCTCAACTTCAAAATTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTCAATGCCTTTGTTCCTTGCTCTGCTTCTAATCAACACCCCCATCAGTCTTGTCAATCCAACACCCACCTTAATTCGAGCGTCAATAAGGCCAAAATCAGCAACCCAAATGCCCATGACTCTGCATTTCAACCTTCCCAACTCAATCCCGTACTGGGTTCTCGTTCTCGCGCGGTGGAGAACGCCTCTCCCTTGGCCGGAGTATTACCTTCATCAGCTGCGGCAAAAGAACATGTTGAAGGCTTAGGAAATGATTACATCCCTGCACGTATTTGA

Protein sequence

MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQSCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAKEHVEGLGNDYIPARI*

Homology

[Close]

BLAST of MELO3C006753 vs. TrEMBL
Match: E5GC41_CUCME (Chromatin remodelling complex ATPase chain isw-1 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK
Sbjct: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 123

[Close]

BLAST of MELO3C006753 vs. TrEMBL
Match: A0A0A0L988_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171150 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.3e-55
Identity = 112/123 (91.06%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA   ++SSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA---AASSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           S QSNTH NS VNKAKISNPNAHDSAFQPSQLNPVLG RSRAVENASPLAG LP SAAAK
Sbjct: 61  SFQSNTHFNSGVNKAKISNPNAHDSAFQPSQLNPVLGYRSRAVENASPLAGALPPSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 120

[Close]

BLAST of MELO3C006753 vs. TrEMBL
Match: A0A0E0EEY1_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 3   FGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSF--NAFVPCSASNQHP-- 62
           + D+DDDW L+ E+LD LERDA +K+A+ + S+S++S+++S     A+ P   S+ HP  
Sbjct: 16  YDDDDDDWGLSAEQLDQLERDAYRKLAERKASSSAASTATSPLPSAAYSPVKNSHHHPAS 75

Query: 63  ---HQSCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLN 94
              H+SC        S++ +++S PNA  +A   SQ N
Sbjct: 76  RVSHESCFGKV---ESLSPSRLSQPNASGNAVNNSQGN 110

[Close]

BLAST of MELO3C006753 vs. TrEMBL
Match: Q69WP6_ORYSJ (Os07g0636200 protein OS=Oryza sativa subsp. japonica GN=OJ1136_D11.106 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 5   DEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSF--NAFVPCSASNQHP---- 64
           D+DDDW L+ E+LD LERDA +K+A+ + S+S++S+++S     A+ P   S+ HP    
Sbjct: 60  DDDDDWGLSAEQLDQLERDAYRKLAERKASSSAASTATSPLPSAAYSPVKNSHHHPASRV 119

Query: 65  -HQSCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLN 94
             +SC        S++ +++S PNA  +A   SQ N
Sbjct: 120 SQESCFGKV---ESLSPSRLSQPNASGNAVNNSQGN 152

[Close]

BLAST of MELO3C006753 vs. TrEMBL
Match: A0A0D3GTZ9_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 5   DEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSF--NAFVPCSASNQHP---- 64
           D+DDDW L+ E+LD LERDA +K+A+ + S+S++S+++S     A+ P   S+ HP    
Sbjct: 60  DDDDDWGLSAEQLDQLERDAYRKLAERKASSSAASTATSPLPSAAYSPVKNSHHHPASRV 119

Query: 65  -HQSCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLN 94
             +SC        S++ +++S PNA  +A   SQ N
Sbjct: 120 SQESCFGKV---ESLSPSRLSQPNASGNAVNNSQGN 152

[Close]

BLAST of MELO3C006753 vs. NCBI nr
Match: gi|659077040|ref|XP_008439000.1| (PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.7e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK
Sbjct: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 123

[Close]

BLAST of MELO3C006753 vs. NCBI nr
Match: gi|307136202|gb|ADN34040.1| (chromatin remodelling complex ATPase chain isw-1 [Cucumis melo subsp. melo])

HSP 1 Score: 246.5 bits (628), Expect = 2.7e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK
Sbjct: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 123

[Close]

BLAST of MELO3C006753 vs. NCBI nr
Match: gi|700202074|gb|KGN57207.1| (hypothetical protein Csa_3G171150 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 112/123 (91.06%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA   ++SSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA---AASSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           S QSNTH NS VNKAKISNPNAHDSAFQPSQLNPVLG RSRAVENASPLAG LP SAAAK
Sbjct: 61  SFQSNTHFNSGVNKAKISNPNAHDSAFQPSQLNPVLGYRSRAVENASPLAGALPPSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 120

[Close]

BLAST of MELO3C006753 vs. NCBI nr
Match: gi|449459866|ref|XP_004147667.1| (PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 112/123 (91.06%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQ 60
           MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA   ++SSSSFNAFVPCSASNQHPHQ
Sbjct: 1   MEFGDEDDDWNLTPEELDSLERDAVQKIAQLQNSA---AASSSSFNAFVPCSASNQHPHQ 60

Query: 61  SCQSNTHLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAK 120
           S QSNTH NS VNKAKISNPNAHDSAFQPSQLNPVLG RSRAVENASPLAG LP SAAAK
Sbjct: 61  SFQSNTHFNSGVNKAKISNPNAHDSAFQPSQLNPVLGYRSRAVENASPLAGALPPSAAAK 120

Query: 121 EHV 124
           EHV
Sbjct: 121 EHV 120

[Close]

BLAST of MELO3C006753 vs. NCBI nr
Match: gi|645233753|ref|XP_008223495.1| (PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Prunus mume])

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1


Query: 6   EDDDWNLTPEELDSLERDAVQKIAQLQNSASSSSSSSSSFNAFVPCSASNQHPHQSCQSN 65
           EDDDW+L+ EELDSLER+A QK+AQ Q   S+S+ SSSSF      S+S+ H HQ  QS 
Sbjct: 4   EDDDWDLSAEELDSLEREAFQKLAQ-QRINSASACSSSSF------SSSHNH-HQLHQS- 63

Query: 66  THLNSSVNKAKISNPNAHDSAFQPSQLNPVLGSRSRAVENASPLAGVLPSSAAAKEHVE 125
               S++N       N++ + FQ S   P+  S    V   SP   VLPSS   K +++
Sbjct: 64  --FPSTIN-------NSNTNCFQSSPAKPIPNSLPNKVAPLSPGTRVLPSSVPCKVNLD 104

The following BLAST results are available for this feature:

BLAST of MELO3C006753 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC41_CUCME	1.8e-62	100.00	Chromatin remodelling complex ATPase chain isw-1 OS=Cucumis melo subsp. melo PE=...	[more]
A0A0A0L988_CUCSA	8.3e-55	91.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171150 PE=4 SV=1	[more]
A0A0E0EEY1_9ORYZ	2.6e-08	37.76	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
Q69WP6_ORYSJ	3.8e-07	37.50	Os07g0636200 protein OS=Oryza sativa subsp. japonica GN=OJ1136_D11.106 PE=2 SV=1	[more]
A0A0D3GTZ9_9ORYZ	3.8e-07	37.50	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]

BLAST of MELO3C006753 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077040\|ref\|XP_008439000.1\|	2.7e-62	100.00	PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chroma...	[more]
gi\|307136202\|gb\|ADN34040.1\|	2.7e-62	100.00	chromatin remodelling complex ATPase chain isw-1 [Cucumis melo subsp. melo]	[more]
gi\|700202074\|gb\|KGN57207.1\|	1.2e-54	91.06	hypothetical protein Csa_3G171150 [Cucumis sativus]	[more]
gi\|449459866\|ref\|XP_004147667.1\|	1.2e-54	91.06	PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chroma...	[more]
gi\|645233753\|ref\|XP_008223495.1\|	3.4e-09	42.86	PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chroma...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU67387	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006753T1	MELO3C006753T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU67387	MU67387	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006753	Csa3G171150	Cucumber (Chinese Long) v2	cumeB236
MELO3C006753	Cla021830	Watermelon (97103) v1	mewmB461
MELO3C006753	ClCG05G006880	Watermelon (Charleston Gray)	mewcgB427
MELO3C006753	Cla97C05G088520	Watermelon (97103) v2	mewmbB434
MELO3C006753	Bhi01G000822	Wax gourd	mewgoB529
MELO3C006753	CSPI03G15370	Wild cucumber (PI 183967)	cpimeB230
MELO3C006753	Cucsa.252150	Cucumber (Gy14) v1	cgymeB439
MELO3C006753	CmaCh06G015880	Cucurbita maxima (Rimu)	cmameB763
MELO3C006753	CmoCh06G015830	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006753	Lsi05G013840	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006753	Cp4.1LG08g05450	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006753	CsGy3G015440	Cucumber (Gy14) v2	cgybmeB200
MELO3C006753	Carg25658	Silver-seed gourd	carmeB0736
MELO3C006753	CsaV3_3G015550	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006753	Wax gourd	mewgoB519
MELO3C006753	Melon (DHL92) v3.5.1	memeB051
MELO3C006753	Cucurbita maxima (Rimu)	cmameB242
MELO3C006753	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006753	Cucurbita moschata (Rifu)	cmomeB335
MELO3C006753	Watermelon (Charleston Gray)	mewcgB442
MELO3C006753	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006753	Silver-seed gourd	carmeB0074
MELO3C006753	Silver-seed gourd	carmeB0280