MELO3C006739 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006739
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCalcium-dependent lipid-binding family protein isoform 1
Locationchr6 : 5596512 .. 5597179 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGTATGCATCGAAAGAAAATGATACCTGGATTCGTGCCCTTGTGAAGGATTTCACCATTGAGGCTGGTTCAGGACTAGTTATTCTTGATCCAGTTGATGTTTCTGGGGGATATACATCTGTAAAGGACAAAACCAATATGTCTCTCGTTACAACTGATATCTGCATCCATCTCTCATTGAGTGCCATTTCCCTCATACTTAATCTGCAAAGTCAAGCTGTTGAAGCAATGATGTTTGGAAATGCTGTACCTCTTATTGCCTGTACCAATTTTGATAAGCTCTGGGTGTCACCAAGAGGTTCTTAATTTAACTGGAATAATTAAATTTTTGCTCCGAATAAAATTTGTTTTGAAGTCAACTTTATTAACTAGTAACCATCTAGTATCGAAAGATTTTGGCTGGTTATCCGGTTCTTTGAACCGTAATGAATTGACTACTTTCATTCTTGCAACTGTGTTGGTTTATCCATGCAGAAAATGGGTCCTCTCATAACCTTACCTTCTGGCGTCCTCGAGCTCCATCAAATTATGTTATATTAGGAGATTGTGTGACTTCACGGTAAGTCTTCTAACTTTCTTCTGTTTCTAGAAAATATTTGGTTTTATTACAGAAAGTATTTGTTTTGCTAGAAAGTAGTTGTTTTAATTATTATTTCAGTTGA

mRNA sequence

ATGGATAGGTATGCATCGAAAGAAAATGATACCTGGATTCGTGCCCTTGTGAAGGATTTCACCATTGAGGCTGGTTCAGGACTAGTTATTCTTGATCCAGTTGATGTTTCTGGGGGATATACATCTGTAAAGGACAAAACCAATATGTCTCTCGTTACAACTGATATCTGCATCCATCTCTCATTGAGTGCCATTTCCCTCATACTTAATCTGCAAAGTCAAGCTGTTGAAGCAATGATGTTTGGAAATGCTGTACCTCTTATTGCCTGTACCAATTTTGATAAGCTCTGGGTGTCACCAAGAGAAAATGGGTCCTCTCATAACCTTACCTTCTGGCGTCCTCGAGCTCCATCAAATTATGTTATATTAGGAGATTGTGTGACTTCACGTTGA

Coding sequence (CDS)

ATGGATAGGTATGCATCGAAAGAAAATGATACCTGGATTCGTGCCCTTGTGAAGGATTTCACCATTGAGGCTGGTTCAGGACTAGTTATTCTTGATCCAGTTGATGTTTCTGGGGGATATACATCTGTAAAGGACAAAACCAATATGTCTCTCGTTACAACTGATATCTGCATCCATCTCTCATTGAGTGCCATTTCCCTCATACTTAATCTGCAAAGTCAAGCTGTTGAAGCAATGATGTTTGGAAATGCTGTACCTCTTATTGCCTGTACCAATTTTGATAAGCTCTGGGTGTCACCAAGAGAAAATGGGTCCTCTCATAACCTTACCTTCTGGCGTCCTCGAGCTCCATCAAATTATGTTATATTAGGAGATTGTGTGACTTCACGTTGA

Protein sequence

MDRYASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLSAISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVILGDCVTSR*
Homology
[Close]
BLAST of MELO3C006739 vs. TrEMBL
Match: A0A0A0L976_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G170010 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-65
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTN+SLVTTDICIHLSLS
Sbjct: 1872 YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNISLVTTDICIHLSLS 1931

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL
Sbjct: 1932 AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 1991

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 1992 GDCVTSR 1998

[Close]
BLAST of MELO3C006739 vs. TrEMBL
Match: A0A061EP79_THECC (Calcium-dependent lipid-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-56
Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRA+VKD TIEAGSGL+ILDP+D+SGGYTS+K+KTNMSL++TDICIHLSLS
Sbjct: 1933 YASKENDTWIRAVVKDLTIEAGSGLIILDPLDISGGYTSIKEKTNMSLISTDICIHLSLS 1992

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISL+LNLQ+QA  A+ FGNAVPL  CTNFD++WVSP+ENGS +NLT WRP+APSNYVIL
Sbjct: 1993 AISLLLNLQNQAAAALQFGNAVPLAPCTNFDRIWVSPKENGSHNNLTIWRPQAPSNYVIL 2052

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2053 GDCVTSR 2059

[Close]
BLAST of MELO3C006739 vs. TrEMBL
Match: A0A061EPR6_THECC (Calcium-dependent lipid-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-56
Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRA+VKD TIEAGSGL+ILDP+D+SGGYTS+K+KTNMSL++TDICIHLSLS
Sbjct: 1809 YASKENDTWIRAVVKDLTIEAGSGLIILDPLDISGGYTSIKEKTNMSLISTDICIHLSLS 1868

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISL+LNLQ+QA  A+ FGNAVPL  CTNFD++WVSP+ENGS +NLT WRP+APSNYVIL
Sbjct: 1869 AISLLLNLQNQAAAALQFGNAVPLAPCTNFDRIWVSPKENGSHNNLTIWRPQAPSNYVIL 1928

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 1929 GDCVTSR 1935

[Close]
BLAST of MELO3C006739 vs. TrEMBL
Match: A0A061EX48_THECC (Calcium-dependent lipid-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-56
Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRA+VKD TIEAGSGL+ILDP+D+SGGYTS+K+KTNMSL++TDICIHLSLS
Sbjct: 1809 YASKENDTWIRAVVKDLTIEAGSGLIILDPLDISGGYTSIKEKTNMSLISTDICIHLSLS 1868

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISL+LNLQ+QA  A+ FGNAVPL  CTNFD++WVSP+ENGS +NLT WRP+APSNYVIL
Sbjct: 1869 AISLLLNLQNQAAAALQFGNAVPLAPCTNFDRIWVSPKENGSHNNLTIWRPQAPSNYVIL 1928

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 1929 GDCVTSR 1935

[Close]
BLAST of MELO3C006739 vs. TrEMBL
Match: A0A061EQ98_THECC (Calcium-dependent lipid-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_021446 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-56
Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRA+VKD TIEAGSGL+ILDP+D+SGGYTS+K+KTNMSL++TDICIHLSLS
Sbjct: 1933 YASKENDTWIRAVVKDLTIEAGSGLIILDPLDISGGYTSIKEKTNMSLISTDICIHLSLS 1992

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISL+LNLQ+QA  A+ FGNAVPL  CTNFD++WVSP+ENGS +NLT WRP+APSNYVIL
Sbjct: 1993 AISLLLNLQNQAAAALQFGNAVPLAPCTNFDRIWVSPKENGSHNNLTIWRPQAPSNYVIL 2052

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2053 GDCVTSR 2059

[Close]
BLAST of MELO3C006739 vs. TAIR10
Match: AT1G48090.1 (AT1G48090.1 calcium-dependent lipid-binding family protein)

HSP 1 Score: 202.6 bits (514), Expect = 1.5e-52
Identity = 92/127 (72.44%), Postives = 109/127 (85.83%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKE D W+RAL+K+  +E GSGL+ILDPVD+SGGYTSVK+KTNMSL +TDI +HLSLS
Sbjct: 1973 YASKEKDIWVRALLKNLVVETGSGLIILDPVDISGGYTSVKEKTNMSLTSTDIYMHLSLS 2032

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            A+SL+LNLQSQ   A+  GNA+PL +CTNFD++WVSP+ENG  +NLT WRP+APSNYVIL
Sbjct: 2033 ALSLLLNLQSQVTGALQSGNAIPLASCTNFDRIWVSPKENGPRNNLTIWRPQAPSNYVIL 2092

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2093 GDCVTSR 2099

[Close]
BLAST of MELO3C006739 vs. NCBI nr
Match: gi|659077001|ref|XP_008438979.1| (PREDICTED: uncharacterized protein LOC103483912 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 8.5e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS
Sbjct: 1921 YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 1980

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL
Sbjct: 1981 AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 2040

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2041 GDCVTSR 2047

[Close]
BLAST of MELO3C006739 vs. NCBI nr
Match: gi|778679130|ref|XP_011651092.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213129 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.5e-65
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTN+SLVTTDICIHLSLS
Sbjct: 1921 YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNISLVTTDICIHLSLS 1980

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL
Sbjct: 1981 AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 2040

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2041 GDCVTSR 2047

[Close]
BLAST of MELO3C006739 vs. NCBI nr
Match: gi|700202059|gb|KGN57192.1| (hypothetical protein Csa_3G170010 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.5e-65
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTN+SLVTTDICIHLSLS
Sbjct: 1872 YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNISLVTTDICIHLSLS 1931

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
            AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL
Sbjct: 1932 AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 1991

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 1992 GDCVTSR 1998

[Close]
BLAST of MELO3C006739 vs. NCBI nr
Match: gi|645233701|ref|XP_008223471.1| (PREDICTED: uncharacterized protein LOC103323263 [Prunus mume])

HSP 1 Score: 229.9 bits (585), Expect = 2.5e-57
Identity = 104/127 (81.89%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTWIRALVKD T+EAGSGL++LDPVD+SGGYTSVKDKTNMSL++TD+C HLSLS
Sbjct: 1915 YASKENDTWIRALVKDLTVEAGSGLIVLDPVDISGGYTSVKDKTNMSLLSTDVCFHLSLS 1974

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
             +SLILNLQSQA  A+ FGN +PL+ACTNFD++WVSP+ENGS +NLTFWRPRAPSNYVIL
Sbjct: 1975 VVSLILNLQSQATAALQFGNPMPLVACTNFDRIWVSPKENGSCYNLTFWRPRAPSNYVIL 2034

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2035 GDCVTSR 2041

[Close]
BLAST of MELO3C006739 vs. NCBI nr
Match: gi|694393228|ref|XP_009372063.1| (PREDICTED: uncharacterized protein LOC103961250 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 228.0 bits (580), Expect = 9.4e-57
Identity = 101/127 (79.53%), Postives = 119/127 (93.70%), Query Frame = 1 

Query: 4    YASKENDTWIRALVKDFTIEAGSGLVILDPVDVSGGYTSVKDKTNMSLVTTDICIHLSLS 63
            YASKENDTW+RALVKD T+EAGSGL++LDPVD+SGGYTSVKDKTNMSL++TD+C HLSLS
Sbjct: 1927 YASKENDTWVRALVKDLTVEAGSGLIVLDPVDISGGYTSVKDKTNMSLLSTDVCFHLSLS 1986

Query: 64   AISLILNLQSQAVEAMMFGNAVPLIACTNFDKLWVSPRENGSSHNLTFWRPRAPSNYVIL 123
             +SLILNLQ+QA  A+ FGN++PL+ CTNFD++WVSP+ENGS +NLTFWRPRAPSNYVIL
Sbjct: 1987 VVSLILNLQTQATSALQFGNSMPLVGCTNFDRIWVSPKENGSCYNLTFWRPRAPSNYVIL 2046

Query: 124  GDCVTSR 131
            GDCVTSR
Sbjct: 2047 GDCVTSR 2053

The following BLAST results are available for this feature:
BLAST of MELO3C006739 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L976_CUCSA1.7e-6599.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G170010 PE=4 SV=1[more]
A0A061EP79_THECC7.2e-5681.10Calcium-dependent lipid-binding family protein isoform 1 OS=Theobroma cacao GN=T... [more]
A0A061EPR6_THECC7.2e-5681.10Calcium-dependent lipid-binding family protein isoform 2 (Fragment) OS=Theobroma... [more]
A0A061EX48_THECC7.2e-5681.10Calcium-dependent lipid-binding family protein isoform 3 OS=Theobroma cacao GN=T... [more]
A0A061EQ98_THECC7.2e-5681.10Calcium-dependent lipid-binding family protein isoform 4 OS=Theobroma cacao GN=T... [more]
BLAST of MELO3C006739 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G48090.11.5e-5272.44 calcium-dependent lipid-binding family protein[more]
BLAST of MELO3C006739 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077001|ref|XP_008438979.1|8.5e-66100.00PREDICTED: uncharacterized protein LOC103483912 [Cucumis melo][more]
gi|778679130|ref|XP_011651092.1|2.5e-6599.21PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213129 [Cucumis sa... [more]
gi|700202059|gb|KGN57192.1|2.5e-6599.21hypothetical protein Csa_3G170010 [Cucumis sativus][more]
gi|645233701|ref|XP_008223471.1|2.5e-5781.89PREDICTED: uncharacterized protein LOC103323263 [Prunus mume][more]
gi|694393228|ref|XP_009372063.1|9.4e-5779.53PREDICTED: uncharacterized protein LOC103961250 isoform X2 [Pyrus x bretschneide... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045053 protein retention in Golgi apparatus
biological_process GO:0006623 protein targeting to vacuole
cellular_component GO:0005575 cellular_component
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006739T1MELO3C006739T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 9..130
score: 2.0
NoneNo IPR availablePANTHERPTHR16166:SF93PROTEIN T08G11.1, ISOFORM Acoord: 9..130
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006739Cla021818Watermelon (97103) v1mewmB461
MELO3C006739Lsi05G013990Bottle gourd (USVL1VR-Ls)lsimeB379
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006739Watermelon (97103) v2mewmbB434
MELO3C006739Wax gourdmewgoB519
MELO3C006739Wax gourdmewgoB529
MELO3C006739Melon (DHL92) v3.5.1memeB051
MELO3C006739Cucumber (Gy14) v1cgymeB439
MELO3C006739Cucurbita maxima (Rimu)cmameB242
MELO3C006739Cucurbita maxima (Rimu)cmameB763
MELO3C006739Cucurbita moschata (Rifu)cmomeB230
MELO3C006739Cucurbita moschata (Rifu)cmomeB335
MELO3C006739Cucurbita moschata (Rifu)cmomeB755
MELO3C006739Wild cucumber (PI 183967)cpimeB230
MELO3C006739Cucumber (Chinese Long) v2cumeB236
MELO3C006739Watermelon (Charleston Gray)mewcgB427
MELO3C006739Watermelon (Charleston Gray)mewcgB442
MELO3C006739Cucurbita pepo (Zucchini)cpemeB585
MELO3C006739Cucurbita pepo (Zucchini)cpemeB813
MELO3C006739Cucumber (Gy14) v2cgybmeB200
MELO3C006739Silver-seed gourdcarmeB0074
MELO3C006739Silver-seed gourdcarmeB0280
MELO3C006739Silver-seed gourdcarmeB0736
MELO3C006739Cucumber (Chinese Long) v3cucmeB236