MELO3C006730 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006730
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr6 : 5476832 .. 5477686 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGGAAAAGATCAAGAGCATGATAAATTGTCCACAACCCAAGGATGTGACAGGATTAAGGGGTTTCCTAGGCTTGACGGGGTATTATAGAAGGTTTGTGAAGGGCTATGGTGAAATTGCAGCCCCATTAACCAAACTCCTACACAAGAATGCATTCCATTGGAATGAAGAAGCCACAATAGCCTTTGAACTGCTAAAAACTTCCATGACTACCACACCCGTACTAGCTCTCCCGGATTGGTCTTTGCCCTTTGTGTTGGAAACGAATGCTTCAGGTATTGGTTTGGGAACGATGCTGTCACAAAATGGGCATCCAATAGCTTTCTTTAGCCAAAAATTATCCTTGAGAGCACACACAAAATCTATATATGAAATAGAACTGATGGCAGTGGTACTTGTAGAGCAGAAGTGGAGACACTACTTATTGAGGCAGAAATTCACCATCATCTCTGATCAAAAAGCTTTGAAATTCCTATTAGAACAAAGGGAAGTGCAGCCTCAGTTTCAAAAGTGGTTAACTAAGTTGCTAGGGTATGATTTCGAAATCCTATACCAGCCCGGATTGCAAAACAAAGCAGCCGATGCTTTGTCCAAATTGGAACAGACAGCCGAGTTGAACGCCATGACTACACTTGGAATAATTGATATCGAAGTAGTAGAAAAAGAAGTGAAGAAAAAAGGATGGGGAGTTGCAGGAAATTATAAAAAAAAAAACTTGAAGGAGAATCAGGATGAGGGAGGGAAATATAAATGGGAGAACGAGAGATTATTGTATAAAGGAAGGGTAGTGATCTCAAAAACATCCTCTCTAATTCCAAACTGCTGCATACTTTCCATGATTCCATTTTAG

mRNA sequence

ATGGATGAGGAAAAGATCAAGAGCATGATAAATTGTCCACAACCCAAGGATGTGACAGGATTAAGGGGTTTCCTAGGCTTGACGGGGTATTATAGAAGGTTTGTGAAGGGCTATGGTGAAATTGCAGCCCCATTAACCAAACTCCTACACAAGAATGCATTCCATTGGAATGAAGAAGCCACAATAGCCTTTGAACTGCTAAAAACTTCCATGACTACCACACCCGTACTAGCTCTCCCGGATTGGTCTTTGCCCTTTGTGTTGGAAACGAATGCTTCAGGTATTGGTTTGGGAACGATGCTGTCACAAAATGGGCATCCAATAGCTTTCTTTAGCCAAAAATTATCCTTGAGAGCACACACAAAATCTATATATGAAATAGAACTGATGGCAGTGGTACTTGTAGAGCAGAAGTGGAGACACTACTTATTGAGGCAGAAATTCACCATCATCTCTGATCAAAAAGCTTTGAAATTCCTATTAGAACAAAGGGAAGTGCAGCCTCAGTTTCAAAAGTGGTTAACTAAGTTGCTAGGGTATGATTTCGAAATCCTATACCAGCCCGGATTGCAAAACAAAGCAGCCGATGCTTTGTCCAAATTGGAACAGACAGCCGAGTTGAACGCCATGACTACACTTGGAATAATTGATATCGAAGTAGTAGAAAAAGAAGTGAAGAAAAAAGGATGGGGAGTTGCAGGAAATTATAAAAAAAAAAACTTGAAGGAGAATCAGGATGAGGGAGGGAAATATAAATGGGAGAACGAGAGATTATTGTATAAAGGAAGGGTAGTGATCTCAAAAACATCCTCTCTAATTCCAAACTGCTGCATACTTTCCATGATTCCATTTTAG

Coding sequence (CDS)

ATGGATGAGGAAAAGATCAAGAGCATGATAAATTGTCCACAACCCAAGGATGTGACAGGATTAAGGGGTTTCCTAGGCTTGACGGGGTATTATAGAAGGTTTGTGAAGGGCTATGGTGAAATTGCAGCCCCATTAACCAAACTCCTACACAAGAATGCATTCCATTGGAATGAAGAAGCCACAATAGCCTTTGAACTGCTAAAAACTTCCATGACTACCACACCCGTACTAGCTCTCCCGGATTGGTCTTTGCCCTTTGTGTTGGAAACGAATGCTTCAGGTATTGGTTTGGGAACGATGCTGTCACAAAATGGGCATCCAATAGCTTTCTTTAGCCAAAAATTATCCTTGAGAGCACACACAAAATCTATATATGAAATAGAACTGATGGCAGTGGTACTTGTAGAGCAGAAGTGGAGACACTACTTATTGAGGCAGAAATTCACCATCATCTCTGATCAAAAAGCTTTGAAATTCCTATTAGAACAAAGGGAAGTGCAGCCTCAGTTTCAAAAGTGGTTAACTAAGTTGCTAGGGTATGATTTCGAAATCCTATACCAGCCCGGATTGCAAAACAAAGCAGCCGATGCTTTGTCCAAATTGGAACAGACAGCCGAGTTGAACGCCATGACTACACTTGGAATAATTGATATCGAAGTAGTAGAAAAAGAAGTGAAGAAAAAAGGATGGGGAGTTGCAGGAAATTATAAAAAAAAAAACTTGAAGGAGAATCAGGATGAGGGAGGGAAATATAAATGGGAGAACGAGAGATTATTGTATAAAGGAAGGGTAGTGATCTCAAAAACATCCTCTCTAATTCCAAACTGCTGCATACTTTCCATGATTCCATTTTAG

Protein sequence

MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEATIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHTKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKNLKENQDEGGKYKWENERLLYKGRVVISKTSSLIPNCCILSMIPF*

Homology

[Close]

BLAST of MELO3C006730 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-36
Identity = 83/200 (41.50%), Postives = 120/200 (60.00%), Query Frame = 1


Query: 5   KIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNE--EATI 64
           K+K++++ P P     +R FLGLTGYYR+F+  Y +IA P+T  L K      +  E   
Sbjct: 425 KVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIE 484

Query: 65  AFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHTK 124
           AFE LK  +   P+L LPD+   FVL T+AS + LG +LSQNGHPI+F S+ L+      
Sbjct: 485 AFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNY 544

Query: 125 SIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDF 184
           S  E EL+A+V   + +RHYLL ++F I SD + L++L   +E   + ++W  +L  Y F
Sbjct: 545 SAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQF 604

Query: 185 EILYQPGLQNKAADALSKLE 203
           +I Y  G +N  ADALS+++
Sbjct: 605 KIDYIKGKENSVADALSRIK 624

[Close]

BLAST of MELO3C006730 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.4e-35
Identity = 83/205 (40.49%), Postives = 122/205 (59.51%), Query Frame = 1


Query: 4   EKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAF--HWNEEAT 63
           EKI+++   P P     ++ FLGLTGYYR+F+  + +IA P+TK L KN      N E  
Sbjct: 425 EKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYD 484

Query: 64  IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHT 123
            AF+ LK  ++  P+L +PD++  F L T+AS + LG +LSQ+GHP+++ S+ L+     
Sbjct: 485 SAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEIN 544

Query: 124 KSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYD 183
            S  E EL+A+V   + +RHYLL + F I SD + L +L   ++   +  +W  KL  +D
Sbjct: 545 YSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFD 604

Query: 184 FEILYQPGLQNKAADALS--KLEQT 205
           F+I Y  G +N  ADALS  KLE+T
Sbjct: 605 FDIKYIKGKENCVADALSRIKLEET 629

[Close]

BLAST of MELO3C006730 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.2e-25
Identity = 87/286 (30.42%), Postives = 137/286 (47.90%), Query Frame = 1


Query: 2   DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLL------------ 61
           D EK+K++   P+P  V  +R FLGL  YYR F+K +  IA P+T +L            
Sbjct: 398 DPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMS 457

Query: 62  HKNAFHWNEEATIAFELLKTSMTTTPV-LALPDWSLPFVLETNASGIGLGTMLSQNGHPI 121
            K    +NE    AF+ L+  + +  V L  PD+  PF L T+AS  G+G +LSQ G PI
Sbjct: 458 KKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPI 517

Query: 122 AFFSQKLSLRAHTKSIYEIELMAVVLVEQKWRHYLL-RQKFTIISDQKALKFLLEQREVQ 181
              S+ L       +  E EL+A+V    K +++L   ++  I +D + L F +  R   
Sbjct: 518 TMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTN 577

Query: 182 PQFQKWLTKLLGYDFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKK 241
            + ++W + +  ++ ++ Y+PG +N  ADALS+      LNA+      D   +  E+  
Sbjct: 578 AKIKRWKSYIDQHNAKVFYKPGKENFVADALSR----QNLNALQNEPQSDAATIHSELSL 637

Query: 242 KGWGVAGNYKKKNLKENQD--EGGKYKWENERLLY--KGRVVISKT 270
             + V    K  N   NQ   E  ++  +   +L+  K R +IS T
Sbjct: 638 T-YTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLISFT 678

[Close]

BLAST of MELO3C006730 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-25
Identity = 86/293 (29.35%), Postives = 140/293 (47.78%), Query Frame = 1


Query: 3   EEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNA-FHWNEEAT 62
           +E I  ++   QPK+   LR FLG   Y R+F+    ++  PL  LL K+  + W    T
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQT 683

Query: 63  IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNG-----HPIAFFSQKLS 122
            A E +K  + + PVL   D+S   +LET+AS + +G +LSQ       +P+ ++S K+S
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743

Query: 123 LRAHTKSIYEIELMAVVLVEQKWRHYL--LRQKFTIISDQKAL--KFLLEQREVQPQFQK 182
                 S+ + E++A++   + WRHYL    + F I++D + L  +   E      +  +
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803

Query: 183 WLTKLLGYDFEILYQPGLQNKAADALSKLEQTAE----------LNAMTTLGIIDIEVVE 242
           W   L  ++FEI Y+PG  N  ADALS++    E          +N +  + I D +   
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD-DFKN 863

Query: 243 KEVKKKGWGVAGNYKKKNLKENQDEGGKYKWENERLLYKGRVVISKTSSLIPN 276
           + V +       + K  NL  N+D+    + E    L  G ++ SK   L+PN
Sbjct: 864 QVVTE----YTNDTKLLNLLNNEDK----RVEENIQLKDGLLINSKDQILLPN 907

[Close]

BLAST of MELO3C006730 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-25
Identity = 86/293 (29.35%), Postives = 140/293 (47.78%), Query Frame = 1


Query: 3   EEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNA-FHWNEEAT 62
           +E I  ++   QPK+   LR FLG   Y R+F+    ++  PL  LL K+  + W    T
Sbjct: 624 QENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQT 683

Query: 63  IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNG-----HPIAFFSQKLS 122
            A E +K  + + PVL   D+S   +LET+AS + +G +LSQ       +P+ ++S K+S
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743

Query: 123 LRAHTKSIYEIELMAVVLVEQKWRHYL--LRQKFTIISDQKAL--KFLLEQREVQPQFQK 182
                 S+ + E++A++   + WRHYL    + F I++D + L  +   E      +  +
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR 803

Query: 183 WLTKLLGYDFEILYQPGLQNKAADALSKLEQTAE----------LNAMTTLGIIDIEVVE 242
           W   L  ++FEI Y+PG  N  ADALS++    E          +N +  + I D +   
Sbjct: 804 WQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD-DFKN 863

Query: 243 KEVKKKGWGVAGNYKKKNLKENQDEGGKYKWENERLLYKGRVVISKTSSLIPN 276
           + V +       + K  NL  N+D+    + E    L  G ++ SK   L+PN
Sbjct: 864 QVVTE----YTNDTKLLNLLNNEDK----RVEENIQLKDGLLINSKDQILLPN 907

[Close]

BLAST of MELO3C006730 vs. TrEMBL
Match: A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.7e-73
Identity = 146/272 (53.68%), Postives = 198/272 (72.79%), Query Frame = 1


Query: 2    DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEAT 61
            D  K+++M++ P PK++  LRGFLGLTGYYRRFV+GYG IA PLT LL K+ F W+EEAT
Sbjct: 827  DPSKLQAMVSWPLPKNIKALRGFLGLTGYYRRFVQGYGSIAKPLTSLLKKDKFQWSEEAT 886

Query: 62   IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHT 121
            +AFE LK +M+T PVLAL D+S  FV+E++ASGIGLG +L Q   P+A+FSQ L+ R   
Sbjct: 887  VAFEKLKVAMSTVPVLALVDFSELFVVESDASGIGLGAVLLQKQKPVAYFSQALTDRQKL 946

Query: 122  KSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYD 181
            KS+YE ELMA+V   QKWRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG++
Sbjct: 947  KSVYERELMAIVFAIQKWRHYLLGRKFLVRTDQKSLKFLLEQREVNLEYQQWLTKILGFN 1006

Query: 182  FEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKNL 241
            F+I Y+PGL+NKAADALS++E   +L A++    I +E + +EV +    V+   K++ L
Sbjct: 1007 FDIHYKPGLENKAADALSRVEGLPQLYALSVPAAIQLEEINEEVDRN--PVSKKIKEEVL 1066

Query: 242  KENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
             +     G Y     RLLY G++V+ K S LI
Sbjct: 1067 LDASTHSG-YSVVQGRLLYNGKLVLPKESYLI 1095

[Close]

BLAST of MELO3C006730 vs. TrEMBL
Match: A0A087G0A8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.7e-71
Identity = 141/272 (51.84%), Postives = 196/272 (72.06%), Query Frame = 1


Query: 2    DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEAT 61
            D +KI++M++ P+PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+E A+
Sbjct: 796  DPQKIQAMVSWPEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSEAAS 855

Query: 62   IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHT 121
             AF+ LK +MTT PVL+L D+S  FV+E++ASGIGLG +L Q   PIA++SQ L+ R   
Sbjct: 856  GAFQQLKQAMTTVPVLSLVDFSELFVVESDASGIGLGAVLMQQQRPIAYYSQALTDRQKL 915

Query: 122  KSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYD 181
            KS+YE ELMA+V   Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+D
Sbjct: 916  KSVYERELMAIVFAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNTEYQQWLTKILGFD 975

Query: 182  FEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKNL 241
            F+I+Y+PGL+NKAADALS+ E   +L A++    I +E++  EV K          K+ +
Sbjct: 976  FDIVYKPGLENKAADALSRREVMPQLFALSVPAAIQLEMITAEVDK---DAESRKIKEEV 1035

Query: 242  KENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
              + D    Y     RLL +G++VI K S L+
Sbjct: 1036 LGDVDAHPGYSVVQGRLLKQGKLVIPKASPLV 1064

[Close]

BLAST of MELO3C006730 vs. TrEMBL
Match: A0A087H2T9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 6.0e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 39  VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 98

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 99  GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 158

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 159 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 218

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 219 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 278

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 279 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 308

[Close]

BLAST of MELO3C006730 vs. TrEMBL
Match: A0A087H2U0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 6.0e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 672 VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 731

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 732 GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 791

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 792 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 851

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 852 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 911

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 912 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 941

[Close]

BLAST of MELO3C006730 vs. TrEMBL
Match: A0A087H2T8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 6.0e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 297 VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 356

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 357 GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 416

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 417 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 476

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 477 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 536

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 537 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 566

[Close]

BLAST of MELO3C006730 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 2   DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEAT 61
           D  K+++M+  P+PK+ T LRGFLGLTGYYRRFVK YG+I  PLT+LL KN+  W E A 
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAA 106

Query: 62  IAFELLKTSMTTTPVLALPDWSLPFV 88
           +AF+ LK ++TT PVLALPD  LPFV
Sbjct: 107 LAFKALKGAVTTLPVLALPDLKLPFV 132

[Close]

BLAST of MELO3C006730 vs. NCBI nr
Match: gi|674235545|gb|KFK28310.1| (hypothetical protein AALP_AA8G499800 [Arabis alpina])

HSP 1 Score: 283.1 bits (723), Expect = 5.4e-73
Identity = 146/272 (53.68%), Postives = 198/272 (72.79%), Query Frame = 1


Query: 2    DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEAT 61
            D  K+++M++ P PK++  LRGFLGLTGYYRRFV+GYG IA PLT LL K+ F W+EEAT
Sbjct: 827  DPSKLQAMVSWPLPKNIKALRGFLGLTGYYRRFVQGYGSIAKPLTSLLKKDKFQWSEEAT 886

Query: 62   IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHT 121
            +AFE LK +M+T PVLAL D+S  FV+E++ASGIGLG +L Q   P+A+FSQ L+ R   
Sbjct: 887  VAFEKLKVAMSTVPVLALVDFSELFVVESDASGIGLGAVLLQKQKPVAYFSQALTDRQKL 946

Query: 122  KSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYD 181
            KS+YE ELMA+V   QKWRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG++
Sbjct: 947  KSVYERELMAIVFAIQKWRHYLLGRKFLVRTDQKSLKFLLEQREVNLEYQQWLTKILGFN 1006

Query: 182  FEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKNL 241
            F+I Y+PGL+NKAADALS++E   +L A++    I +E + +EV +    V+   K++ L
Sbjct: 1007 FDIHYKPGLENKAADALSRVEGLPQLYALSVPAAIQLEEINEEVDRN--PVSKKIKEEVL 1066

Query: 242  KENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
             +     G Y     RLLY G++V+ K S LI
Sbjct: 1067 LDASTHSG-YSVVQGRLLYNGKLVLPKESYLI 1095

[Close]

BLAST of MELO3C006730 vs. NCBI nr
Match: gi|674229525|gb|KFK23310.1| (hypothetical protein AALP_AAs43195U000200 [Arabis alpina])

HSP 1 Score: 276.9 bits (707), Expect = 3.8e-71
Identity = 141/272 (51.84%), Postives = 196/272 (72.06%), Query Frame = 1


Query: 2    DEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEAT 61
            D +KI++M++ P+PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+E A+
Sbjct: 796  DPQKIQAMVSWPEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSEAAS 855

Query: 62   IAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAHT 121
             AF+ LK +MTT PVL+L D+S  FV+E++ASGIGLG +L Q   PIA++SQ L+ R   
Sbjct: 856  GAFQQLKQAMTTVPVLSLVDFSELFVVESDASGIGLGAVLMQQQRPIAYYSQALTDRQKL 915

Query: 122  KSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYD 181
            KS+YE ELMA+V   Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+D
Sbjct: 916  KSVYERELMAIVFAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNTEYQQWLTKILGFD 975

Query: 182  FEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKNL 241
            F+I+Y+PGL+NKAADALS+ E   +L A++    I +E++  EV K          K+ +
Sbjct: 976  FDIVYKPGLENKAADALSRREVMPQLFALSVPAAIQLEMITAEVDK---DAESRKIKEEV 1035

Query: 242  KENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
              + D    Y     RLL +G++VI K S L+
Sbjct: 1036 LGDVDAHPGYSVVQGRLLKQGKLVIPKASPLV 1064

[Close]

BLAST of MELO3C006730 vs. NCBI nr
Match: gi|674243677|gb|KFK36442.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 275.8 bits (704), Expect = 8.6e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 672 VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 731

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 732 GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 791

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 792 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 851

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 852 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 911

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 912 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 941

[Close]

BLAST of MELO3C006730 vs. NCBI nr
Match: gi|674243676|gb|KFK36441.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 275.8 bits (704), Expect = 8.6e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 39  VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 98

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 99  GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 158

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 159 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 218

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 219 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 278

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 279 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 308

[Close]

BLAST of MELO3C006730 vs. NCBI nr
Match: gi|674243675|gb|KFK36440.1| (hypothetical protein AALP_AA4G124900 [Arabis alpina])

HSP 1 Score: 275.8 bits (704), Expect = 8.6e-71
Identity = 141/273 (51.65%), Postives = 201/273 (73.63%), Query Frame = 1


Query: 1   MDEEKIKSMINCPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAAPLTKLLHKNAFHWNEEA 60
           ++ +KI +M++  +PK++  LRGFLGLTGYYR+FV+GYG+IA PLT LL K+ F W+ EA
Sbjct: 297 VNPQKIHAMVSWLEPKNIKALRGFLGLTGYYRKFVRGYGDIAKPLTSLLKKDQFQWSVEA 356

Query: 61  TIAFELLKTSMTTTPVLALPDWSLPFVLETNASGIGLGTMLSQNGHPIAFFSQKLSLRAH 120
            +AF+ LK +MTT PVLAL D+S  FV++++ASGIGLG +L Q   PIAFFSQ L+ R  
Sbjct: 357 GVAFQRLKQAMTTVPVLALVDFSELFVIKSDASGIGLGAVLMQQQKPIAFFSQALTDRQK 416

Query: 121 TKSIYEIELMAVVLVEQKWRHYLLRQKFTIISDQKALKFLLEQREVQPQFQKWLTKLLGY 180
            KS+YE ELMA+VL  Q+WRHYLL +KF + +DQK+LKFLLEQREV  ++Q+WLTK+LG+
Sbjct: 417 LKSVYERELMAIVLAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNAEYQQWLTKILGF 476

Query: 181 DFEILYQPGLQNKAADALSKLEQTAELNAMTTLGIIDIEVVEKEVKKKGWGVAGNYKKKN 240
           DF+I+Y+PGL+NKAADALS+ E   +L A++  G I +++++ EV K    +  +  K  
Sbjct: 477 DFDIVYKPGLENKAADALSRREGVPQLFALSIPGAIQLDMIQTEVDK---DMELSKIKAE 536

Query: 241 LKENQDEGGKYKWENERLLYKGRVVISKTSSLI 274
           + +N     ++     RLL +G++VI K+S L+
Sbjct: 537 VLQNVGLHPEFSVVQGRLLKQGKLVIPKSSILV 566

The following BLAST results are available for this feature:

BLAST of MELO3C006730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	2.4e-36	41.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	3.4e-35	40.49	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POLY_DROME	4.2e-25	30.42	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
TF26_SCHPO	7.1e-25	29.35	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF29_SCHPO	7.1e-25	29.35	Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO3C006730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087GEK8_ARAAL	3.7e-73	53.68	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1	[more]
A0A087G0A8_ARAAL	2.7e-71	51.84	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1	[more]
A0A087H2T9_ARAAL	6.0e-71	51.65	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2U0_ARAAL	6.0e-71	51.65	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2T8_ARAAL	6.0e-71	51.65	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]

BLAST of MELO3C006730 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	1.5e-25	61.63	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of MELO3C006730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|674235545\|gb\|KFK28310.1\|	5.4e-73	53.68	hypothetical protein AALP_AA8G499800 [Arabis alpina]	[more]
gi\|674229525\|gb\|KFK23310.1\|	3.8e-71	51.84	hypothetical protein AALP_AAs43195U000200 [Arabis alpina]	[more]
gi\|674243677\|gb\|KFK36442.1\|	8.6e-71	51.65	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]
gi\|674243676\|gb\|KFK36441.1\|	8.6e-71	51.65	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]
gi\|674243675\|gb\|KFK36440.1\|	8.6e-71	51.65	hypothetical protein AALP_AA4G124900 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006730T1	MELO3C006730T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..206 score: 1.6
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..206 score: 1.6
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 1..186 score: 9.04

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006730	Cucurbita maxima (Rimu)	cmameB242
MELO3C006730	Cucurbita maxima (Rimu)	cmameB342
MELO3C006730	Cucurbita maxima (Rimu)	cmameB763
MELO3C006730	Cucurbita maxima (Rimu)	cmameB850
MELO3C006730	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006730	Cucurbita moschata (Rifu)	cmomeB335
MELO3C006730	Cucurbita moschata (Rifu)	cmomeB832
MELO3C006730	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006730	Wild cucumber (PI 183967)	cpimeB230
MELO3C006730	Cucumber (Chinese Long) v2	cumeB236
MELO3C006730	Watermelon (Charleston Gray)	mewcgB427
MELO3C006730	Watermelon (Charleston Gray)	mewcgB442
MELO3C006730	Watermelon (97103) v1	mewmB486
MELO3C006730	Watermelon (97103) v1	mewmB461
MELO3C006730	Cucurbita pepo (Zucchini)	cpemeB140
MELO3C006730	Cucurbita pepo (Zucchini)	cpemeB314
MELO3C006730	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006730	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006730	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006730	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006730	Cucumber (Gy14) v2	cgybmeB200
MELO3C006730	Silver-seed gourd	carmeB0074
MELO3C006730	Silver-seed gourd	carmeB0280
MELO3C006730	Silver-seed gourd	carmeB0736
MELO3C006730	Cucumber (Chinese Long) v3	cucmeB236
MELO3C006730	Watermelon (97103) v2	mewmbB434
MELO3C006730	Watermelon (97103) v2	mewmbB448
MELO3C006730	Wax gourd	mewgoB519
MELO3C006730	Wax gourd	mewgoB529
MELO3C006730	Melon (DHL92) v3.5.1	memeB051
MELO3C006730	Cucumber (Gy14) v1	cgymeB439