MELO3C006729 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006729
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr6 : 5470077 .. 5470322 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCAAAAAAGAAGAGAACTTAAATTCAAAGTTGGGGATGAAGTGTACTTAAAGTTGAGACCGTATAGGCAGCGTTCTTTGACTAGGAAGAGGTGTGAGAAACTGGCACCTAGATACTATGGACCATATAGAATCAAGGAAGAAATTGGGGAAGTGGCTTATCGCCTGGAATTACCACCAAGGGCAACCATCCATGATGTTTTCCACATCTCACAAATGAAGCTGAAACTGGGGAAGTAG

mRNA sequence

ATGGCTGATCAAAAAAGAAGAGAACTTAAATTCAAAGTTGGGGATGAAGTGTACTTAAAGTTGAGACCGTATAGGCAGCGTTCTTTGACTAGGAAGAGGTGTGAGAAACTGGCACCTAGATACTATGGACCATATAGAATCAAGGAAGAAATTGGGGAAGTGGCTTATCGCCTGGAATTACCACCAAGGGCAACCATCCATGATGTTTTCCACATCTCACAAATGAAGCTGAAACTGGGGAAGTAG

Coding sequence (CDS)

ATGGCTGATCAAAAAAGAAGAGAACTTAAATTCAAAGTTGGGGATGAAGTGTACTTAAAGTTGAGACCGTATAGGCAGCGTTCTTTGACTAGGAAGAGGTGTGAGAAACTGGCACCTAGATACTATGGACCATATAGAATCAAGGAAGAAATTGGGGAAGTGGCTTATCGCCTGGAATTACCACCAAGGGCAACCATCCATGATGTTTTCCACATCTCACAAATGAAGCTGAAACTGGGGAAGTAG

Protein sequence

MADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELPPRATIHDVFHISQMKLKLGK*

Homology

[Close]

BLAST of MELO3C006729 vs. TrEMBL
Match: D1GEG7_BRARP (Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-21
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD+ RREL F VGD VYLKL+P+RQ ++ R+ C+KLA +Y+GPY I E IG+VAYRL+LP
Sbjct: 2543 ADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLP 2602

Query: 62   PRATIHDVFHISQMKLKLG 81
              A IH VFHISQ+K  LG
Sbjct: 2603 DEARIHPVFHISQLKAALG 2621

[Close]

BLAST of MELO3C006729 vs. TrEMBL
Match: A0A087GAS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD  RRE+ F VGD V+LKLRPYRQ+SL R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 1264 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 1323

Query: 62   PRATIHDVFHISQMKLKLG 81
            P A +H  FH+SQ+K  LG
Sbjct: 1324 PTAKVHHTFHVSQLKASLG 1342

[Close]

BLAST of MELO3C006729 vs. TrEMBL
Match: A0A087HNU2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2   ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
           AD  RRE+ F VGD V+LKLRPYRQ+SL+R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 472 ADNHRREVNFAVGDLVFLKLRPYRQKSLSRRPNEKLAARYYGPYEIEARVGPVAYKLKLP 531

Query: 62  PRATIHDVFHISQMKLKLG 81
           P A +H  FH+SQ+K  LG
Sbjct: 532 PTAKVHHTFHVSQLKAALG 550

[Close]

BLAST of MELO3C006729 vs. TrEMBL
Match: A0A087HNU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD  RRE+ F VGD V+LKLRPYRQ+SL+R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 1139 ADNHRREVNFAVGDLVFLKLRPYRQKSLSRRPNEKLAARYYGPYEIEARVGPVAYKLKLP 1198

Query: 62   PRATIHDVFHISQMKLKLG 81
            P A +H  FH+SQ+K  LG
Sbjct: 1199 PTAKVHHTFHVSQLKAALG 1217

[Close]

BLAST of MELO3C006729 vs. TrEMBL
Match: A0A087GAS4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 2   ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
           AD  RRE+ F VGD V+LKLRPYRQ+SL R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 192 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 251

Query: 62  PRATIHDVFHISQMKLKLG 81
           P A +H  FH+SQ+K  LG
Sbjct: 252 PTAKVHHTFHVSQLKASLG 270

[Close]

BLAST of MELO3C006729 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 5.7e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD KRRELK KVG+EVYLKL+PYRQRSL RK+ EKLAPRYYGPY+I EEIG VAYRL+LP
Sbjct: 963  ADLKRRELKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLP 1022

Query: 62   PRATIHDVFHISQMKLKLG 81
            P A IH+VFHISQ+K KLG
Sbjct: 1023 PEAAIHNVFHISQLKPKLG 1041

[Close]

BLAST of MELO3C006729 vs. NCBI nr
Match: gi|922560347|ref|XP_013608444.1| (PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea])

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-21
Identity = 48/79 (60.76%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD+ RRE++F VGD V+LKL+PYRQ++++R+ C+KLA ++YGPY++ E IG+ AY+L LP
Sbjct: 1139 ADKSRREVEFSVGDMVFLKLQPYRQKTVSRRVCQKLAAKFYGPYKVIERIGKTAYKLLLP 1198

Query: 62   PRATIHDVFHISQMKLKLG 81
            P A IH VFHISQ+KL LG
Sbjct: 1199 PEARIHVVFHISQLKLALG 1217

[Close]

BLAST of MELO3C006729 vs. NCBI nr
Match: gi|227438239|gb|ACP30609.1| (disease resistance protein [Brassica rapa subsp. pekinensis])

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-21
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD+ RREL F VGD VYLKL+P+RQ ++ R+ C+KLA +Y+GPY I E IG+VAYRL+LP
Sbjct: 2543 ADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLP 2602

Query: 62   PRATIHDVFHISQMKLKLG 81
              A IH VFHISQ+K  LG
Sbjct: 2603 DEARIHPVFHISQLKAALG 2621

[Close]

BLAST of MELO3C006729 vs. NCBI nr
Match: gi|674251029|gb|KFK43794.1| (hypothetical protein AALP_AA1G173500 [Arabis alpina])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2   ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
           AD  RRE+ F VGD V+LKLRPYRQ+SL+R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 472 ADNHRREVNFAVGDLVFLKLRPYRQKSLSRRPNEKLAARYYGPYEIEARVGPVAYKLKLP 531

Query: 62  PRATIHDVFHISQMKLKLG 81
           P A +H  FH+SQ+K  LG
Sbjct: 532 PTAKVHHTFHVSQLKAALG 550

[Close]

BLAST of MELO3C006729 vs. NCBI nr
Match: gi|674251028|gb|KFK43793.1| (hypothetical protein AALP_AA1G173500 [Arabis alpina])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2    ADQKRRELKFKVGDEVYLKLRPYRQRSLTRKRCEKLAPRYYGPYRIKEEIGEVAYRLELP 61
            AD  RRE+ F VGD V+LKLRPYRQ+SL+R+  EKLA RYYGPY I+  +G VAY+L+LP
Sbjct: 1139 ADNHRREVNFAVGDLVFLKLRPYRQKSLSRRPNEKLAARYYGPYEIEARVGPVAYKLKLP 1198

Query: 62   PRATIHDVFHISQMKLKLG 81
            P A +H  FH+SQ+K  LG
Sbjct: 1199 PTAKVHHTFHVSQLKAALG 1217

The following BLAST results are available for this feature:

BLAST of MELO3C006729 vs. TrEMBL


Match Name	E-value	Identity	Description
D1GEG7_BRARP	3.6e-21	63.29	Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A087GAS3_ARAAL	1.1e-20	62.03	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A0A087HNU2_ARAAL	1.1e-20	62.03	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]
A0A087HNU1_ARAAL	1.1e-20	62.03	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]
A0A087GAS4_ARAAL	1.1e-20	62.03	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]

BLAST of MELO3C006729 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	5.7e-28	79.75	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|922560347\|ref\|XP_013608444.1\|	5.2e-21	60.76	PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea...	[more]
gi\|227438239\|gb\|ACP30609.1\|	5.2e-21	63.29	disease resistance protein [Brassica rapa subsp. pekinensis]	[more]
gi\|674251029\|gb\|KFK43794.1\|	1.5e-20	62.03	hypothetical protein AALP_AA1G173500 [Arabis alpina]	[more]
gi\|674251028\|gb\|KFK43793.1\|	1.5e-20	62.03	hypothetical protein AALP_AA1G173500 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006729T1	MELO3C006729T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..81 score: 1.7
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..81 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006729	Watermelon (97103) v2	mewmbB434
MELO3C006729	Watermelon (97103) v2	mewmbB448
MELO3C006729	Wax gourd	mewgoB519
MELO3C006729	Wax gourd	mewgoB529
MELO3C006729	Melon (DHL92) v3.5.1	memeB051
MELO3C006729	Cucumber (Gy14) v1	cgymeB439
MELO3C006729	Cucurbita maxima (Rimu)	cmameB242
MELO3C006729	Cucurbita maxima (Rimu)	cmameB342
MELO3C006729	Cucurbita maxima (Rimu)	cmameB763
MELO3C006729	Cucurbita maxima (Rimu)	cmameB850
MELO3C006729	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006729	Cucurbita moschata (Rifu)	cmomeB335
MELO3C006729	Cucurbita moschata (Rifu)	cmomeB832
MELO3C006729	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006729	Wild cucumber (PI 183967)	cpimeB230
MELO3C006729	Cucumber (Chinese Long) v2	cumeB236
MELO3C006729	Watermelon (Charleston Gray)	mewcgB427
MELO3C006729	Watermelon (Charleston Gray)	mewcgB442
MELO3C006729	Watermelon (97103) v1	mewmB486
MELO3C006729	Watermelon (97103) v1	mewmB461
MELO3C006729	Cucurbita pepo (Zucchini)	cpemeB140
MELO3C006729	Cucurbita pepo (Zucchini)	cpemeB314
MELO3C006729	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006729	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006729	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006729	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006729	Cucumber (Gy14) v2	cgybmeB200
MELO3C006729	Silver-seed gourd	carmeB0074
MELO3C006729	Silver-seed gourd	carmeB0280
MELO3C006729	Silver-seed gourd	carmeB0736
MELO3C006729	Cucumber (Chinese Long) v3	cucmeB236