MELO3C006675 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006675
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative E3 ubiquitin-protein ligase LIN-1
Locationchr6 : 4966280 .. 4968666 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTCCCATATCTTTATTTCAAATATGGACAACAACCTTCTTCCTATTTCACCATTGTCTGGACATACATTAAAGGTAAGCAAATACATTATAAAAATATTGTCTTGGCTTAAATAAATATGTTGTTTGTATTGTACATAGTTTAATTGATTATGATATTTAAACTGTATTCTTAGTTCTCCAATTTGGTAGATATAATTAAGGGTGAGTATGATACTTCGAAAAATTAAACTAATTAACCAAAATCGATCCAATCGAAAAGGGTCGGTTGGAAATAACGAGGGAGGAAGTTAGTTGAGGGAGGTTTGAAAATATTCTAAGTATACGACAACATTTCTTTGAAGTTTCAAAGACTTTAAACCAATCCAAACCGATTGATTGACGACTAGTATGCAACATTTCACAATCGTGGTCGGTTTGAACATGTACTAAACTAACTATAGTTAATGTGGTGAAATTCGACTCTCGACCTATTGATGCACACCCGTAAGTATAACATTGAATTATATATAAAACAATAGATATTAATTGGAATAATTTACCAAGTTAGTCCATCAACGTCTTGAATGATATATAATTTGATGTTTTGTCTCATCCAAAGTTAAAAGGTTGAAATTCAAAACATTATATAATACTTTCTTTCTCTCGTAGCATTTTAAAGTTTTCCTTATTTTAAAAACTATACTAGTAATAAAATAAAATCACACCTAGGACTTTAATCAGATTTCTATATATGTATGTACATTACAACCTTTCAAAGACTACCTTATTTAATAATATATAGTACTAATAAAATAAAATCCCAAACAATAATGATACATTCAATTCATAAAATATATAAATACAATTTAGTGAAACAAAAAATTTAAAAAGAAAAAAGAAGAAGAAGAAGAAGAGAAGAAGAAATTGTGATAATAAGACAATAGAAGCAGAGGATAGTGTGGCTGGTTTCATGTATTCTCCTTTTCATGACAGCAAACAATGGCACATCCAAACAAAAATATGGTACAGAGATTAGCTTTCAAAGCTCAGTCCCTGTGTCTTTTATCCCCAAAAAACAACAACTTTTGCCATTTTCCAATCCCTCCTACTCTACCCTTTTAACCATTGTACTGTTTTTGGTTCAAGAATCTAAAAATTAACAGTCCCATGCTTTATGATTACACACAAAATCCAAAAATCTCAAGAACCTACTTGGATTCTCTTGGAAACTGAGCAACTGGGTGTTTACGATAAAAACCCACAGGACGAAAAGGTTCGTGTTCTTCTCTTGTTGTTCTAAAAATGATTTGGAAGTTGGAATTTGGAATTTGGAACAGTGTTTTAGTTTCACGATAGCATGATGCCAAATTTAAATGGTAATTTATTGATCGAGTGAATCCAAGAGTGAACCAGGAAATGTACCCATGATAGAAGCGAAGGTCAACAGTTTGTCTGTAGCAGGAAGGAAGTTTTTGAGGGCCCAATTCGGAAGTTTTGGATTTTGGCTGGAATTGTCACGGGAAATTGTTCCCGACCTTCAATTTTCTGCAACAGAGATAAATTTTGGTTTTCATCTCTCTTGTTTATTGTTTCAGTGTATTCTGCTCTTCATGAGACCGCCATGTCCAAAAGCTGCATTCCTATTGCTTCTTCTTCTTCTTCTCCCACTCAGTGTCCACTACCTGTTTGTGAAAATGAGCGACTGGACCCGAACTCCATTAGGGGCCTTGTCGTATCTATCAACCAGTATATTCATGAATTCTTGAGCAATGCTGAGGTTAGGACTGCTGTCAAATTGAGATGTACCTCCAAGCTAAGAAACCAGAGACCTGGGTTTTTGGAATTCTTGGAACAATCTATCATCTCAAATCTTTACTGGGGCATCGAGAACATTGAAGATGCAGTTCAAACAAGCTCCTCAGAAGCCAAGGCCACCAGGCTTCAGACTGCTGAACAAATGCTTCAAGTGCCAGCATTGGTTGACGAGCATGGCGAGACATCAGGAATGGAAAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCAATTGTCAAGAAGCTTCAAGGGGATGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCCCCAAGATTGGTTCTCACAGAATTTGCTCAAGAATTTTGCTACAGTCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTTTAGAAGTATGGGGTTCAATCCTTCTGTAGAATTTGGCGAGGGTGATTATGGTGAATCAAGTATAAGGCAGGTAGCTAGAAAATACAAGGACTGGCTGATGTATTATCAGGTTATGTCTTACGGAGAGACTCATCAGTGGCAGCAACTGGGAAGCAGCAATATGATGTCTTCTGAAGATGGATCACTTTCCTTGTAA

mRNA sequence

ATGTCATTCCCATATCTTTATTTCAAATATGGACAACAACCTTCTTCCTATTTCACCATTGTCTGGACATACATTAAAGTGTATTCTGCTCTTCATGAGACCGCCATGTCCAAAAGCTGCATTCCTATTGCTTCTTCTTCTTCTTCTCCCACTCAGTGTCCACTACCTGTTTGTGAAAATGAGCGACTGGACCCGAACTCCATTAGGGGCCTTGTCGTATCTATCAACCAGTATATTCATGAATTCTTGAGCAATGCTGAGGTTAGGACTGCTGTCAAATTGAGATGTACCTCCAAGCTAAGAAACCAGAGACCTGGGTTTTTGGAATTCTTGGAACAATCTATCATCTCAAATCTTTACTGGGGCATCGAGAACATTGAAGATGCAGTTCAAACAAGCTCCTCAGAAGCCAAGGCCACCAGGCTTCAGACTGCTGAACAAATGCTTCAAGTGCCAGCATTGGTTGACGAGCATGGCGAGACATCAGGAATGGAAAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCAATTGTCAAGAAGCTTCAAGGGGATGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCCCCAAGATTGGTTCTCACAGAATTTGCTCAAGAATTTTGCTACAGTCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTTTAGAAGTATGGGGTTCAATCCTTCTGTAGAATTTGGCGAGGGTGATTATGGTGAATCAAGTATAAGGCAGGTAGCTAGAAAATACAAGGACTGGCTGATGTATTATCAGGTTATGTCTTACGGAGAGACTCATCAGTGGCAGCAACTGGGAAGCAGCAATATGATGTCTTCTGAAGATGGATCACTTTCCTTGTAA

Coding sequence (CDS)

ATGTCATTCCCATATCTTTATTTCAAATATGGACAACAACCTTCTTCCTATTTCACCATTGTCTGGACATACATTAAAGTGTATTCTGCTCTTCATGAGACCGCCATGTCCAAAAGCTGCATTCCTATTGCTTCTTCTTCTTCTTCTCCCACTCAGTGTCCACTACCTGTTTGTGAAAATGAGCGACTGGACCCGAACTCCATTAGGGGCCTTGTCGTATCTATCAACCAGTATATTCATGAATTCTTGAGCAATGCTGAGGTTAGGACTGCTGTCAAATTGAGATGTACCTCCAAGCTAAGAAACCAGAGACCTGGGTTTTTGGAATTCTTGGAACAATCTATCATCTCAAATCTTTACTGGGGCATCGAGAACATTGAAGATGCAGTTCAAACAAGCTCCTCAGAAGCCAAGGCCACCAGGCTTCAGACTGCTGAACAAATGCTTCAAGTGCCAGCATTGGTTGACGAGCATGGCGAGACATCAGGAATGGAAAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCAATTGTCAAGAAGCTTCAAGGGGATGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCCCCAAGATTGGTTCTCACAGAATTTGCTCAAGAATTTTGCTACAGTCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTTTAGAAGTATGGGGTTCAATCCTTCTGTAGAATTTGGCGAGGGTGATTATGGTGAATCAAGTATAAGGCAGGTAGCTAGAAAATACAAGGACTGGCTGATGTATTATCAGGTTATGTCTTACGGAGAGACTCATCAGTGGCAGCAACTGGGAAGCAGCAATATGATGTCTTCTGAAGATGGATCACTTTCCTTGTAA

Protein sequence

MSFPYLYFKYGQQPSSYFTIVWTYIKVYSALHETAMSKSCIPIASSSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMMSSEDGSLSL*
Homology
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BLAST of MELO3C006675 vs. Swiss-Prot
Match: LIN_MEDTR (Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.4e-17
Identity = 52/157 (33.12%), Postives = 85/157 (54.14%), Query Frame = 1 

Query: 68  IRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKL-----RNQRPGFLEFLEQSIISNLYWG 127
           +R L  +I+ +I + L N E RT  K +C  +L        +   +E+ +Q++++NL WG
Sbjct: 15  VRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNTDKETEVEYSDQAVLANLDWG 74

Query: 128 IENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLSIVKK 187
           IE +E+A+ T + E K  RL  AE+MLQV A+++   +T+G+ N YL   ++  LS + K
Sbjct: 75  IEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWK 134

Query: 188 LQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLL 220
           L+ +      H L+  +V P     +FA E   +L L
Sbjct: 135 LRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFL 171

[Close]
BLAST of MELO3C006675 vs. Swiss-Prot
Match: LIN1_LOTJA (Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-17
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 1 

Query: 68  IRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQ-----RPGFLEFLEQSIISNLYWG 127
           +R L  +++ +I + L N E RT  K +C  +L  +     +   +E+ +Q++++NL WG
Sbjct: 15  VRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWG 74

Query: 128 IENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLSIVKK 187
           IE +E+A+ T + E K  RL  AE+MLQV A+++   + +G+ N YL   ++  LS + K
Sbjct: 75  IEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLSAWAHLNLSYLWK 134

Query: 188 LQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLL 220
           L+ +      H L+  +V P     +FA E   SL L
Sbjct: 135 LRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFL 171

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BLAST of MELO3C006675 vs. Swiss-Prot
Match: LIN2_LOTJA (Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-17
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 1 

Query: 68  IRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQ-----RPGFLEFLEQSIISNLYWG 127
           +R L  +++ +I + L N E RT  K +C  +L  +     +   +E+ +Q++++NL WG
Sbjct: 15  VRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWG 74

Query: 128 IENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLSIVKK 187
           IE +E+A+ T + E K  RL  AE+MLQV A+++   + +G+ N YL   ++  LS + K
Sbjct: 75  IEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLSAWAHLNLSYLWK 134

Query: 188 LQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLL 220
           L+ +      H L+  +V P     +FA E   SL L
Sbjct: 135 LRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFL 171

[Close]
BLAST of MELO3C006675 vs. TrEMBL
Match: A0A0A0L5U3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159430 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 5.5e-136
Identity = 247/260 (95.00%), Postives = 251/260 (96.54%), Query Frame = 1 

Query: 36  MSKSCIPIAS-SSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKL 95
           MSKSCIPIAS SSSS TQCPLPVCENER+D NSIRGLVVSINQYIHEFLSNAE RTAVKL
Sbjct: 1   MSKSCIPIASSSSSSTTQCPLPVCENERVDLNSIRGLVVSINQYIHEFLSNAEARTAVKL 60

Query: 96  RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPAL 155
           RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEA+ATRLQTAEQMLQVPAL
Sbjct: 61  RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEARATRLQTAEQMLQVPAL 120

Query: 156 VDEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC 215
           VDEHGETSGMEN YLVCCSYFYLS+VKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC
Sbjct: 121 VDEHGETSGMENCYLVCCSYFYLSVVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC 180

Query: 216 YSLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH 275
           YSLLLSFATCSRQ+NFRSMGFN SVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH
Sbjct: 181 YSLLLSFATCSRQDNFRSMGFNSSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH 240

Query: 276 QWQQLGSSNMMSSEDGSLSL 295
           QWQQLGSSNM SSEDG  SL
Sbjct: 241 QWQQLGSSNMTSSEDGPHSL 260

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BLAST of MELO3C006675 vs. TrEMBL
Match: A5BP49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010257 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.0e-65
Identity = 135/237 (56.96%), Postives = 173/237 (73.00%), Query Frame = 1 

Query: 59  ENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISN 118
           ++ERLD  SIR LVVS+N +IHEFL+N E R ++KLRC+ KLR Q+  F EF E S+ISN
Sbjct: 16  DHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISN 75

Query: 119 LYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLS 178
           LYWGIE++E A++    E K +RL+ +EQMLQVPAL+DE G T G+ NRY+VCCSYFYLS
Sbjct: 76  LYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLS 135

Query: 179 IVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQ----ENFRSMG 238
           IV+KLQ DEWQVALHFLQ+L+VSPRL+ TEFA   C +L L+ +   RQ     +FRS+ 
Sbjct: 136 IVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVGGRSFRSVS 195

Query: 239 FNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMMSSEDGS 292
              S    EG  GE +IR+ A++YK WLMYYQVM YGET Q +  G ++++S  D S
Sbjct: 196 LMNS---DEGKPGE-AIRETAKRYKSWLMYYQVMQYGETPQ-RPGGYNDILSPVDQS 247

[Close]
BLAST of MELO3C006675 vs. TrEMBL
Match: F6H6Y7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02330 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.1e-65
Identity = 131/221 (59.28%), Postives = 164/221 (74.21%), Query Frame = 1 

Query: 59  ENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISN 118
           ++ERLD  SIR LVVS+N +IHEFL+N E R ++KLRC+ KLR Q+  F EF E S+ISN
Sbjct: 16  DHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISN 75

Query: 119 LYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLS 178
           LYWGIE++E A++    E K +RL+ +EQMLQVPAL+DE G T G+ NRY+VCCSYFYLS
Sbjct: 76  LYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLS 135

Query: 179 IVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQ----ENFRSMG 238
           IV+KLQ DEWQVALHFLQ+L+VSPRL+ TEFA   C +L L+ +   RQ     +FRS+ 
Sbjct: 136 IVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVGGRSFRSVS 195

Query: 239 FNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQ 276
              S    EG  GE +IR+ A++YK WLMYYQVM YGET Q
Sbjct: 196 LMNS---DEGKPGE-AIRETAKRYKSWLMYYQVMQYGETPQ 232

[Close]
BLAST of MELO3C006675 vs. TrEMBL
Match: B9RT68_RICCO (Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0681430 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.8e-58
Identity = 119/243 (48.97%), Postives = 155/243 (63.79%), Query Frame = 1 

Query: 46  SSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRP 105
           +SSS   C     + ER    S++ LV+S+N+Y  E L+N E+  A+K  C SKL  +  
Sbjct: 2   ASSSSFSCSPLSHDYERPGLESVKSLVISVNEYCFELLANGELWNALKSLCISKLNIRNQ 61

Query: 106 GFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGME 165
            F EF E S++SNLYWGIE++E AV+    E KA RL+++E+MLQ PAL+DEHG T+G++
Sbjct: 62  EFFEFSEHSVVSNLYWGIESVEAAVRAKCVEEKANRLKSSERMLQAPALLDEHGVTAGIQ 121

Query: 166 NRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCS 225
           N YLVCCSYFYLS+++KLQ DEWQVALHFLQ++LVSPR V  E A EFC SL        
Sbjct: 122 NHYLVCCSYFYLSMIRKLQNDEWQVALHFLQAMLVSPRFVRAELAPEFCASLFPVSGVLE 181

Query: 226 RQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMM 285
            +      G     +F        +IR++AR+YK WL YYQVM YGET QW    S N  
Sbjct: 182 VETMCGKKGKESVTDFLNEANINDAIREIARRYKHWLTYYQVMLYGETPQWHCRSSYNDE 241

Query: 286 SSE 289
           S +
Sbjct: 242 SQD 244

[Close]
BLAST of MELO3C006675 vs. TrEMBL
Match: A0A0B2Q3N3_GLYSO (Putative E3 ubiquitin-protein ligase LIN-1 OS=Glycine soja GN=glysoja_024709 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.5e-56
Identity = 111/207 (53.62%), Postives = 146/207 (70.53%), Query Frame = 1 

Query: 71  LVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAV 130
           ++VSIN++I + L + + R  +KLRCTS LR Q+  F EF EQS++SNLYWGI++IE A+
Sbjct: 9   VLVSINRFIQDTLEDEKTRNGLKLRCTSNLRIQKQEFFEFSEQSVLSNLYWGIDSIEAAI 68

Query: 131 QTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQV 190
           Q    E ++ RL+ +EQMLQVPA++DE   T+ + NRYLVCCSYFYLS+V+KLQGDEWQ 
Sbjct: 69  QAQQPEERSFRLRNSEQMLQVPAMLDEEEVTATIPNRYLVCCSYFYLSVVRKLQGDEWQA 128

Query: 191 ALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESS 250
           ALHFLQ++LVSP+LV TEFA + C SL         Q N  S            D  + +
Sbjct: 129 ALHFLQAVLVSPKLVWTEFASQLCESLFPQSGITMMQRNSSSRSLE---SVSSEDEMDEA 188

Query: 251 IRQVARKYKDWLMYYQVMSYGETHQWQ 278
           I++VARKYK+WL+YYQVM YGET  W+
Sbjct: 189 IKEVARKYKEWLVYYQVMLYGETPWWR 212

[Close]
BLAST of MELO3C006675 vs. TAIR10
Match: AT3G06880.2 (AT3G06880.2 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 162.2 bits (409), Expect = 5.0e-40
Identity = 104/236 (44.07%), Postives = 134/236 (56.78%), Query Frame = 1 

Query: 43  IASSSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRN 102
           ++SS S+   C     EN  LD      ++VSIN YI   +S+ E   ++K +C + L  
Sbjct: 4   LSSSQSTFISCS----ENSSLD-----SILVSINVYILGVISDPEAWISLKQKCITLLSI 63

Query: 103 QRPGFL-EFL-EQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGE 162
           +    L EF  E S +SNLYWGI++IE ++    SE K +RL+ +E+MLQ+PAL+DE G 
Sbjct: 64  EEDNTLFEFSSEHSALSNLYWGIDSIEASIHPECSEEKTSRLRNSERMLQMPALLDEQGT 123

Query: 163 T-SGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLL 222
           T SG+ N  L+  SYFYLSIV  LQGD  Q  LHFLQS+LVSP +V T+ A E C S+  
Sbjct: 124 TTSGVPNTVLISFSYFYLSIVSYLQGDSLQSTLHFLQSVLVSPEIVRTDIAPELCESIF- 183

Query: 223 SFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQ 276
                          F P V        +  IR++ARKYK    YYQVMSYGETHQ
Sbjct: 184 ---------------FTPGVY-----KSDEEIREIARKYKYRATYYQVMSYGETHQ 209

[Close]
BLAST of MELO3C006675 vs. NCBI nr
Match: gi|659076847|ref|XP_008438896.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo])

HSP 1 Score: 521.9 bits (1343), Expect = 7.1e-145
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 

Query: 36  MSKSCIPIASSSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLR 95
           MSKSCIPIASSSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLR
Sbjct: 1   MSKSCIPIASSSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLR 60

Query: 96  CTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALV 155
           CTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALV
Sbjct: 61  CTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALV 120

Query: 156 DEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCY 215
           DEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCY
Sbjct: 121 DEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCY 180

Query: 216 SLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQ 275
           SLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQ
Sbjct: 181 SLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQ 240

Query: 276 WQQLGSSNMMSSEDGSLSL 295
           WQQLGSSNMMSSEDGSLSL
Sbjct: 241 WQQLGSSNMMSSEDGSLSL 259

[Close]
BLAST of MELO3C006675 vs. NCBI nr
Match: gi|449432864|ref|XP_004134218.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus])

HSP 1 Score: 491.9 bits (1265), Expect = 7.9e-136
Identity = 247/260 (95.00%), Postives = 251/260 (96.54%), Query Frame = 1 

Query: 36  MSKSCIPIAS-SSSSPTQCPLPVCENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKL 95
           MSKSCIPIAS SSSS TQCPLPVCENER+D NSIRGLVVSINQYIHEFLSNAE RTAVKL
Sbjct: 1   MSKSCIPIASSSSSSTTQCPLPVCENERVDLNSIRGLVVSINQYIHEFLSNAEARTAVKL 60

Query: 96  RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPAL 155
           RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEA+ATRLQTAEQMLQVPAL
Sbjct: 61  RCTSKLRNQRPGFLEFLEQSIISNLYWGIENIEDAVQTSSSEARATRLQTAEQMLQVPAL 120

Query: 156 VDEHGETSGMENRYLVCCSYFYLSIVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC 215
           VDEHGETSGMEN YLVCCSYFYLS+VKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC
Sbjct: 121 VDEHGETSGMENCYLVCCSYFYLSVVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFC 180

Query: 216 YSLLLSFATCSRQENFRSMGFNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH 275
           YSLLLSFATCSRQ+NFRSMGFN SVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH
Sbjct: 181 YSLLLSFATCSRQDNFRSMGFNSSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETH 240

Query: 276 QWQQLGSSNMMSSEDGSLSL 295
           QWQQLGSSNM SSEDG  SL
Sbjct: 241 QWQQLGSSNMTSSEDGPHSL 260

[Close]
BLAST of MELO3C006675 vs. NCBI nr
Match: gi|147796407|emb|CAN65866.1| (hypothetical protein VITISV_010257 [Vitis vinifera])

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 135/237 (56.96%), Postives = 173/237 (73.00%), Query Frame = 1 

Query: 59  ENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISN 118
           ++ERLD  SIR LVVS+N +IHEFL+N E R ++KLRC+ KLR Q+  F EF E S+ISN
Sbjct: 16  DHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISN 75

Query: 119 LYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLS 178
           LYWGIE++E A++    E K +RL+ +EQMLQVPAL+DE G T G+ NRY+VCCSYFYLS
Sbjct: 76  LYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLS 135

Query: 179 IVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQ----ENFRSMG 238
           IV+KLQ DEWQVALHFLQ+L+VSPRL+ TEFA   C +L L+ +   RQ     +FRS+ 
Sbjct: 136 IVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVGGRSFRSVS 195

Query: 239 FNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMMSSEDGS 292
              S    EG  GE +IR+ A++YK WLMYYQVM YGET Q +  G ++++S  D S
Sbjct: 196 LMNS---DEGKPGE-AIRETAKRYKSWLMYYQVMQYGETPQ-RPGGYNDILSPVDQS 247

[Close]
BLAST of MELO3C006675 vs. NCBI nr
Match: gi|731388414|ref|XP_010649586.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 isoform X1 [Vitis vinifera])

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 135/237 (56.96%), Postives = 173/237 (73.00%), Query Frame = 1 

Query: 59  ENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISN 118
           ++ERLD  SIR LVVS+N +IHEFL+N E R ++KLRC+ KLR Q+  F EF E S+ISN
Sbjct: 16  DHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISN 75

Query: 119 LYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLS 178
           LYWGIE++E A++    E K +RL+ +EQMLQVPAL+DE G T G+ NRY+VCCSYFYLS
Sbjct: 76  LYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLS 135

Query: 179 IVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQ----ENFRSMG 238
           IV+KLQ DEWQVALHFLQ+L+VSPRL+ TEFA   C +L L+ +   RQ     +FRS+ 
Sbjct: 136 IVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVGGRSFRSVS 195

Query: 239 FNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMMSSEDGS 292
              S    EG  GE +IR+ A++YK WLMYYQVM YGET Q +  G ++++S  D S
Sbjct: 196 LMNS---DEGKPGE-AIRETAKRYKSWLMYYQVMQYGETPQ-RPGGYNDILSPVDQS 247

[Close]
BLAST of MELO3C006675 vs. NCBI nr
Match: gi|359477261|ref|XP_002269707.2| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Vitis vinifera])

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-65
Identity = 135/237 (56.96%), Postives = 173/237 (73.00%), Query Frame = 1 

Query: 59  ENERLDPNSIRGLVVSINQYIHEFLSNAEVRTAVKLRCTSKLRNQRPGFLEFLEQSIISN 118
           ++ERLD  SIR LVVS+N +IHEFL+N E R ++KLRC+ KLR Q+  F EF E S+ISN
Sbjct: 16  DHERLDLQSIRALVVSVNHHIHEFLANNETRKSLKLRCSLKLRIQKQEFFEFSEHSVISN 75

Query: 119 LYWGIENIEDAVQTSSSEAKATRLQTAEQMLQVPALVDEHGETSGMENRYLVCCSYFYLS 178
           LYWGIE++E A++    E K +RL+ +EQMLQVPAL+DE G T G+ NRY+VCCSYFYLS
Sbjct: 76  LYWGIESVEAAIRAKWPEEKTSRLKNSEQMLQVPALLDEQGTTGGISNRYIVCCSYFYLS 135

Query: 179 IVKKLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQ----ENFRSMG 238
           IV+KLQ DEWQVALHFLQ+L+VSPRL+ TEFA   C +L L+ +   RQ     +FRS+ 
Sbjct: 136 IVRKLQRDEWQVALHFLQALMVSPRLIQTEFAPGLCENLFLTHSISERQNVGGRSFRSVS 195

Query: 239 FNPSVEFGEGDYGESSIRQVARKYKDWLMYYQVMSYGETHQWQQLGSSNMMSSEDGS 292
              S    EG  GE +IR+ A++YK WLMYYQVM YGET Q +  G ++++S  D S
Sbjct: 196 LMNS---DEGKPGE-AIRETAKRYKSWLMYYQVMQYGETPQ-RPGGYNDILSPVDQS 247

The following BLAST results are available for this feature:
BLAST of MELO3C006675 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LIN_MEDTR7.4e-1733.12Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1[more]
LIN1_LOTJA9.6e-1732.48Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 S... [more]
LIN2_LOTJA9.6e-1732.48Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1[more]
BLAST of MELO3C006675 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5U3_CUCSA5.5e-13695.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159430 PE=4 SV=1[more]
A5BP49_VITVI3.0e-6556.96Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010257 PE=4 SV=1[more]
F6H6Y7_VITVI5.1e-6559.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g02330 PE=4 SV=... [more]
B9RT68_RICCO7.8e-5848.97Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0681430 PE=4 SV... [more]
A0A0B2Q3N3_GLYSO2.5e-5653.62Putative E3 ubiquitin-protein ligase LIN-1 OS=Glycine soja GN=glysoja_024709 PE=... [more]
BLAST of MELO3C006675 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06880.25.0e-4044.07 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of MELO3C006675 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076847|ref|XP_008438896.1|7.1e-145100.00PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo][more]
gi|449432864|ref|XP_004134218.1|7.9e-13695.00PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus][more]
gi|147796407|emb|CAN65866.1|4.3e-6556.96hypothetical protein VITISV_010257 [Vitis vinifera][more]
gi|731388414|ref|XP_010649586.1|4.3e-6556.96PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 isoform X1 [Vitis vinifera... [more]
gi|359477261|ref|XP_002269707.2|4.3e-6556.96PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Vitis vinifera... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006675T1MELO3C006675T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35549FAMILY NOT NAMEDcoord: 59..221
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006675Silver-seed gourdcarmeB0074
MELO3C006675Silver-seed gourdcarmeB0610
MELO3C006675Silver-seed gourdcarmeB0701
MELO3C006675Cucumber (Chinese Long) v3cucmeB236
MELO3C006675Cucumber (Chinese Long) v3cucmeB509
MELO3C006675Watermelon (97103) v2mewmbB434
MELO3C006675Watermelon (97103) v2mewmbB448
MELO3C006675Wax gourdmewgoB521
MELO3C006675Wax gourdmewgoB529
MELO3C006675Melon (DHL92) v3.5.1memeB051
MELO3C006675Melon (DHL92) v3.5.1memeB113
MELO3C006675Cucumber (Gy14) v1cgymeB439
MELO3C006675Cucurbita maxima (Rimu)cmameB001
MELO3C006675Cucurbita maxima (Rimu)cmameB242
MELO3C006675Cucurbita maxima (Rimu)cmameB342
MELO3C006675Cucurbita maxima (Rimu)cmameB763
MELO3C006675Cucurbita maxima (Rimu)cmameB850
MELO3C006675Cucurbita moschata (Rifu)cmomeB230
MELO3C006675Cucurbita moschata (Rifu)cmomeB335
MELO3C006675Cucurbita moschata (Rifu)cmomeB832
MELO3C006675Cucurbita moschata (Rifu)cmomeB755
MELO3C006675Wild cucumber (PI 183967)cpimeB080
MELO3C006675Wild cucumber (PI 183967)cpimeB230
MELO3C006675Cucumber (Chinese Long) v2cumeB236
MELO3C006675Watermelon (Charleston Gray)mewcgB427
MELO3C006675Watermelon (Charleston Gray)mewcgB442
MELO3C006675Watermelon (97103) v1mewmB486
MELO3C006675Watermelon (97103) v1mewmB461
MELO3C006675Cucurbita pepo (Zucchini)cpemeB140
MELO3C006675Cucurbita pepo (Zucchini)cpemeB144
MELO3C006675Cucurbita pepo (Zucchini)cpemeB314
MELO3C006675Cucurbita pepo (Zucchini)cpemeB585
MELO3C006675Cucurbita pepo (Zucchini)cpemeB813
MELO3C006675Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006675Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006675Cucumber (Gy14) v2cgybmeB070
MELO3C006675Cucumber (Gy14) v2cgybmeB200
MELO3C006675Cucumber (Gy14) v2cgybmeB438