MELO3C006610 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006610
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	CASP-like protein
Location	chr6 : 4578754 .. 4578939 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGTTGTGGGAAGTTAGAAGTGATTCTTAGGGTTTTGGGATTTTTGTTGAGTTTGGTGGCAGCCATTGTTGTGGGAGTTGACAAAGAAACAAAGGTTGTTCCCGTTACTATCTCCTCCAATCTTCCTCCTTTTCCGATTGTCGTGGTTGCTAAATGGCGTTATCTGTCTGCTTTTGTGTAA

mRNA sequence

ATGAGTGGTTGTGGGAAGTTAGAAGTGATTCTTAGGGTTTTGGGATTTTTGTTGAGTTTGGTGGCAGCCATTGTTGTGGGAGTTGACAAAGAAACAAAGGTTGTTCCCGTTACTATCTCCTCCAATCTTCCTCCTTTTCCGATTGTCGTGGTTGCTAAATGGCGTTATCTGTCTGCTTTTGTGTAA

Coding sequence (CDS)

ATGAGTGGTTGTGGGAAGTTAGAAGTGATTCTTAGGGTTTTGGGATTTTTGTTGAGTTTGGTGGCAGCCATTGTTGTGGGAGTTGACAAAGAAACAAAGGTTGTTCCCGTTACTATCTCCTCCAATCTTCCTCCTTTTCCGATTGTCGTGGTTGCTAAATGGCGTTATCTGTCTGCTTTTGTGTAA

Protein sequence

MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV*

Homology

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BLAST of MELO3C006610 vs. Swiss-Prot
Match: CSPL5_VITVI (CASP-like protein 1E2 OS=Vitis vinifera GN=VIT_05s0020g01820 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 5  GKL---EVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          GKL   +++LRV+   L+LVAA+++GVDK+TKVV + +   LPP  + V AKWRYLSAFV
Sbjct: 25 GKLRPFDLVLRVVALALTLVAAVLLGVDKQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFV 84

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BLAST of MELO3C006610 vs. Swiss-Prot
Match: CSPL8_VITVI (CASP-like protein 1E1 OS=Vitis vinifera GN=VIT_07s0104g01350 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 8  EVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          E +LR+LG LL+L+AA+V GVDK+TK++P+T+   LP   + V AKW  +SAFV
Sbjct: 34 EFVLRILGLLLTLIAAVVAGVDKQTKIIPLTLIKTLPSLHVPVTAKWSDMSAFV 87

[Close]

BLAST of MELO3C006610 vs. Swiss-Prot
Match: CSPL7_POPTR (CASP-like protein 1E1 OS=Populus trichocarpa GN=POPTRDRAFT_820934 PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-10
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 3  GCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF 61
          G    +++LRVL  +L+L AAIV+GVDK+TKVVP+ I   LP   + V AKW YLSAF
Sbjct: 26 GASTCDLLLRVLALVLTLAAAIVLGVDKQTKVVPIKIVDTLPAINLPVSAKWHYLSAF 83

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BLAST of MELO3C006610 vs. Swiss-Prot
Match: CSPL5_SOYBN (CASP-like protein 1E2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-10
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 5  GKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          G  +++LR+L F ++LVAAIV+ VDK+TKVVP+ +S +LPP  + + AKW  +SA V
Sbjct: 20 GVSDLLLRLLAFTVTLVAAIVIAVDKQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIV 76

[Close]

BLAST of MELO3C006610 vs. Swiss-Prot
Match: CSPL6_SOYBN (CASP-like protein 1E1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-10
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 5  GKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          G  +++LR+L F ++LVAAIV+ VDK+TK+VP+ +S + PP  + + AKW  +SAFV
Sbjct: 21 GVCDLLLRLLAFTVTLVAAIVIAVDKQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFV 77

[Close]

BLAST of MELO3C006610 vs. TrEMBL
Match: A0A0A0L8Y1_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_3G151500 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 1  MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF 60
          MSGCGKLEVILRVLGFLLSLVAAIV+GVDKETKVVP+TISSNLPPFPIVVVAKW Y+SAF
Sbjct: 1  MSGCGKLEVILRVLGFLLSLVAAIVMGVDKETKVVPITISSNLPPFPIVVVAKWHYVSAF 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C006610 vs. TrEMBL
Match: G7JJ31_MEDTR (CASP-like protein OS=Medicago truncatula GN=MTR_4g118810 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 2  SGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 61
          +G G  E++LR LGF+L+L AAIVVG DK+T +VP+ +  +LPP  + V AKW YLSAFV
Sbjct: 28 AGGGSCELVLRFLGFVLTLAAAIVVGTDKQTTIVPIKVVDSLPPLNVAVSAKWHYLSAFV 87

[Close]

BLAST of MELO3C006610 vs. TrEMBL
Match: A0A0A0LAI6_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_3G151490 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 6  KLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          K+E++ RVLGF+LS VAAIVVG++ +TKVVP+ +S N PP     +AKW YLSAFV
Sbjct: 31 KVEMVFRVLGFVLSFVAAIVVGLNNQTKVVPLAVSLNSPPLDYTFIAKWHYLSAFV 86

[Close]

BLAST of MELO3C006610 vs. TrEMBL
Match: A0A067K8E8_JATCU (CASP-like protein OS=Jatropha curcas GN=JCGZ_13860 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 8  EVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          ++ILR+LGFLL+L A+IV G+DKET +VPVTI   LPP  + + AKW+Y+SAFV
Sbjct: 11 QIILRILGFLLTLTASIVEGIDKETAIVPVTIVETLPPLQVPLTAKWQYVSAFV 64

[Close]

BLAST of MELO3C006610 vs. TrEMBL
Match: V7BS45_PHAVU (CASP-like protein OS=Phaseolus vulgaris GN=PHAVU_006G161900g PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-10
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 3   GCGKL----EVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLS 62
           GCG +    +++LR+L F+L+LVAA+V+G DK+T +VP+ +  ++PP  + V AKW YLS
Sbjct: 123 GCGSVVRICDLVLRILAFVLTLVAAVVIGADKQTAIVPIKLVESMPPLYVPVAAKWHYLS 182

[Close]

BLAST of MELO3C006610 vs. TAIR10
Match: AT4G15630.1 (AT4G15630.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-09
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 7  LEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          LE+ +RVL  +L++VAA V+GV K+TKVVP+ +   LPP  +   AK  YLSAFV
Sbjct: 27 LELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSAFV 81

[Close]

BLAST of MELO3C006610 vs. TAIR10
Match: AT4G15620.1 (AT4G15620.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-08
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 7  LEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          +E+ +RVL  +L++ AA V+GV K+TKVV + +   LPP  I   AK  YLSAFV
Sbjct: 27 VELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLDITTTAKASYLSAFV 81

[Close]

BLAST of MELO3C006610 vs. NCBI nr
Match: gi|659076673|ref|XP_008438806.1| (PREDICTED: CASP-like protein 6 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF 60
          MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF
Sbjct: 1  MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C006610 vs. NCBI nr
Match: gi|449432805|ref|XP_004134189.1| (PREDICTED: CASP-like protein 1E1 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 1  MSGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAF 60
          MSGCGKLEVILRVLGFLLSLVAAIV+GVDKETKVVP+TISSNLPPFPIVVVAKW Y+SAF
Sbjct: 1  MSGCGKLEVILRVLGFLLSLVAAIVMGVDKETKVVPITISSNLPPFPIVVVAKWHYVSAF 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C006610 vs. NCBI nr
Match: gi|659076671|ref|XP_008438805.1| (PREDICTED: CASP-like protein 5 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 6  KLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          K+E++ RVLGF+LS VAAIVVG++ +TKVVP+T+S N PP     +AKW YLSAFV
Sbjct: 36 KVEMVFRVLGFVLSFVAAIVVGLNNQTKVVPLTVSLNTPPLDYTFIAKWHYLSAFV 91

[Close]

BLAST of MELO3C006610 vs. NCBI nr
Match: gi|357478597|ref|XP_003609584.1| (plant integral membrane protein [Medicago truncatula])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 2  SGCGKLEVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 61
          +G G  E++LR LGF+L+L AAIVVG DK+T +VP+ +  +LPP  + V AKW YLSAFV
Sbjct: 28 AGGGSCELVLRFLGFVLTLAAAIVVGTDKQTTIVPIKVVDSLPPLNVAVSAKWHYLSAFV 87

[Close]

BLAST of MELO3C006610 vs. NCBI nr
Match: gi|802688477|ref|XP_012082669.1| (PREDICTED: CASP-like protein 1E1 [Jatropha curcas])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 8  EVILRVLGFLLSLVAAIVVGVDKETKVVPVTISSNLPPFPIVVVAKWRYLSAFV 62
          ++ILR+LGFLL+L A+IV G+DKET +VPVTI   LPP  + + AKW+Y+SAFV
Sbjct: 11 QIILRILGFLLTLTASIVEGIDKETAIVPVTIVETLPPLQVPLTAKWQYVSAFV 64

The following BLAST results are available for this feature:

BLAST of MELO3C006610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSPL5_VITVI	1.1e-10	55.00	CASP-like protein 1E2 OS=Vitis vinifera GN=VIT_05s0020g01820 PE=2 SV=1	[more]
CSPL8_VITVI	1.1e-10	53.70	CASP-like protein 1E1 OS=Vitis vinifera GN=VIT_07s0104g01350 PE=2 SV=1	[more]
CSPL7_POPTR	1.4e-10	55.17	CASP-like protein 1E1 OS=Populus trichocarpa GN=POPTRDRAFT_820934 PE=3 SV=2	[more]
CSPL5_SOYBN	2.4e-10	50.88	CASP-like protein 1E2 OS=Glycine max PE=2 SV=1	[more]
CSPL6_SOYBN	3.1e-10	49.12	CASP-like protein 1E1 OS=Glycine max PE=2 SV=1	[more]

BLAST of MELO3C006610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Y1_CUCSA	2.2e-23	93.44	CASP-like protein OS=Cucumis sativus GN=Csa_3G151500 PE=3 SV=1	[more]
G7JJ31_MEDTR	3.4e-11	56.67	CASP-like protein OS=Medicago truncatula GN=MTR_4g118810 PE=3 SV=1	[more]
A0A0A0LAI6_CUCSA	5.7e-11	60.71	CASP-like protein OS=Cucumis sativus GN=Csa_3G151490 PE=3 SV=1	[more]
A0A067K8E8_JATCU	5.7e-11	61.11	CASP-like protein OS=Jatropha curcas GN=JCGZ_13860 PE=3 SV=1	[more]
V7BS45_PHAVU	3.7e-10	49.21	CASP-like protein OS=Phaseolus vulgaris GN=PHAVU_006G161900g PE=3 SV=1	[more]

BLAST of MELO3C006610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15630.1	1.6e-09	52.73	Uncharacterised protein family (UPF0497)	[more]
AT4G15620.1	2.4e-08	49.09	Uncharacterised protein family (UPF0497)	[more]

BLAST of MELO3C006610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076673\|ref\|XP_008438806.1\|	1.3e-24	100.00	PREDICTED: CASP-like protein 6 [Cucumis melo]	[more]
gi\|449432805\|ref\|XP_004134189.1\|	3.2e-23	93.44	PREDICTED: CASP-like protein 1E1 [Cucumis sativus]	[more]
gi\|659076671\|ref\|XP_008438805.1\|	1.7e-11	62.50	PREDICTED: CASP-like protein 5 [Cucumis melo]	[more]
gi\|357478597\|ref\|XP_003609584.1\|	4.8e-11	56.67	plant integral membrane protein [Medicago truncatula]	[more]
gi\|802688477\|ref\|XP_012082669.1\|	8.2e-11	61.11	PREDICTED: CASP-like protein 1E1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006702	CASP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006610T1	MELO3C006610T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Domain of unknown function DUF588	PFAM	PF04535	DUF588	coord: 4..61 score: 1.
None	No IPR available	PANTHER	PTHR11615	NITRATE, FROMATE, IRON DEHYDROGENASE	coord: 7..61 score: 3.1
None	No IPR available	PANTHER	PTHR11615:SF150	SUBFAMILY NOT NAMED	coord: 7..61 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006610	Csa6G199810	Cucumber (Chinese Long) v2	cumeB499
MELO3C006610	CmaCh14G016420	Cucurbita maxima (Rimu)	cmameB242
MELO3C006610	Lsi09G014010	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006610	Carg17366	Silver-seed gourd	carmeB0610

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C006610	MELO3C021356	Melon (DHL92) v3.5.1	memeB051

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006610	Cucumber (Gy14) v1	cgymeB307
MELO3C006610	Cucumber (Gy14) v1	cgymeB439
MELO3C006610	Cucumber (Gy14) v1	cgymeB595
MELO3C006610	Cucurbita maxima (Rimu)	cmameB342
MELO3C006610	Cucurbita maxima (Rimu)	cmameB763
MELO3C006610	Cucurbita maxima (Rimu)	cmameB850
MELO3C006610	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006610	Cucurbita moschata (Rifu)	cmomeB335
MELO3C006610	Cucurbita moschata (Rifu)	cmomeB832
MELO3C006610	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006610	Wild cucumber (PI 183967)	cpimeB230
MELO3C006610	Wild cucumber (PI 183967)	cpimeB498
MELO3C006610	Wild cucumber (PI 183967)	cpimeB501
MELO3C006610	Cucumber (Chinese Long) v2	cumeB236
MELO3C006610	Cucumber (Chinese Long) v2	cumeB496
MELO3C006610	Watermelon (Charleston Gray)	mewcgB427
MELO3C006610	Watermelon (Charleston Gray)	mewcgB442
MELO3C006610	Watermelon (97103) v1	mewmB486
MELO3C006610	Watermelon (97103) v1	mewmB461
MELO3C006610	Cucurbita pepo (Zucchini)	cpemeB140
MELO3C006610	Cucurbita pepo (Zucchini)	cpemeB144
MELO3C006610	Cucurbita pepo (Zucchini)	cpemeB314
MELO3C006610	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006610	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006610	Bottle gourd (USVL1VR-Ls)	lsimeB369
MELO3C006610	Cucumber (Gy14) v2	cgybmeB200
MELO3C006610	Cucumber (Gy14) v2	cgybmeB437
MELO3C006610	Silver-seed gourd	carmeB0332
MELO3C006610	Silver-seed gourd	carmeB0828
MELO3C006610	Cucumber (Chinese Long) v3	cucmeB236
MELO3C006610	Cucumber (Chinese Long) v3	cucmeB508
MELO3C006610	Cucumber (Chinese Long) v3	cucmeB510
MELO3C006610	Watermelon (97103) v2	mewmbB434
MELO3C006610	Watermelon (97103) v2	mewmbB448
MELO3C006610	Wax gourd	mewgoB521
MELO3C006610	Wax gourd	mewgoB529