MELO3C006385 (gene) Melon (DHL92) v3.5.1

NameMELO3C006385
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionActin-related protein 2/3 complex subunit 2
Locationchr6 : 2945869 .. 2946287 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGGGAAGCTCTGAAAAATGGTCAGAAGCGCCTCCCTGCGGTTGGTCACCCATACCCCCTCCAGAACTGAGAGGCGAACCTTTAGAAGAATTGAGCACCAATGGAGGATTTGTCACCTTTGGTATATATATTTCTATAAATATGTGTGTTATATACAAGTAAAGAATCCAATATTGGTCTTATTATAGTAAAAGATCTCTTGTATTAACCAACGGAAGTAGCTGTCACTTAGTTCAACTTGATATTTGTATCACTAAACTTTGACACTCTACTCCTCTCAAACTCATAATGTGTCAACAGATATTTCTCTGCACCATGTCGAAGGGAAAAGACTTGACAATACAGTGTGGAGTTTGCTGAACTTTAATGCATATGTTAAGTACCATGTAAAGGTATCCTGTTTGTCTATCTAA

mRNA sequence

ATGGATGTGGGAAGCTCTGAAAAATGGTCAGAAGCGCCTCCCTGCGGTTGGTCACCCATACCCCCTCCAGAACTGAGAGGCGAACCTTTAGAAGAATTGAGCACCAATGGAGGATTTGTCACCTTTGATATTTCTCTGCACCATGTCGAAGGGAAAAGACTTGACAATACAGTGTGGAGTTTGCTGAACTTTAATGCATATGTTAAGTACCATGTAAAGGTATCCTGTTTGTCTATCTAA

Coding sequence (CDS)

ATGGATGTGGGAAGCTCTGAAAAATGGTCAGAAGCGCCTCCCTGCGGTTGGTCACCCATACCCCCTCCAGAACTGAGAGGCGAACCTTTAGAAGAATTGAGCACCAATGGAGGATTTGTCACCTTTGATATTTCTCTGCACCATGTCGAAGGGAAAAGACTTGACAATACAGTGTGGAGTTTGCTGAACTTTAATGCATATGTTAAGTACCATGTAAAGGTATCCTGTTTGTCTATCTAA

Protein sequence

MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWSLLNFNAYVKYHVKVSCLSI*
BLAST of MELO3C006385 vs. Swiss-Prot
Match: ARC2B_ARATH (Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-23
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           ++VGS +   +AP C WSPIPP +LRGEP+++L+TN GFV+FDI+  H+EGKRLD TVW+
Sbjct: 197 VEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDITSRHIEGKRLDKTVWN 256

Query: 61  LLNFNAYVKYHVKVS 76
           LLNF A  KYH+K S
Sbjct: 257 LLNFYACAKYHIKCS 271

BLAST of MELO3C006385 vs. Swiss-Prot
Match: ARC2A_ARATH (Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-17
Identity = 41/64 (64.06%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 12  APPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWSLLNFNAYVKYH 71
           AP C WSP  P EL G P E LS N GFVTF I   HVEGK+LD TVW+L  F+AYV YH
Sbjct: 205 APSCSWSPTAPQELEGAPKETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYH 264

Query: 72  VKVS 76
           VK S
Sbjct: 265 VKFS 268

BLAST of MELO3C006385 vs. TrEMBL
Match: A0A0A0L4Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134720 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-35
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKWS+APPC WSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS
Sbjct: 196 MDVGSSEKWSKAPPCCWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 255

Query: 61  LLNFNAYVKYHVKVS 76
           LLNFNAYVKYHVK +
Sbjct: 256 LLNFNAYVKYHVKTT 270

BLAST of MELO3C006385 vs. TrEMBL
Match: B9HKT7_POPTR (Actin-related protein 2/3 complex 34kDa subunit OS=Populus trichocarpa GN=POPTR_0008s17070g PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++APPC WSPIPPPELRGEPLE+LSTNGGFVTFDIS  HVEGK+LD TVWS
Sbjct: 196 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVTFDISSRHVEGKKLDKTVWS 255

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK HVK
Sbjct: 256 LLNFYAYVKKHVK 268

BLAST of MELO3C006385 vs. TrEMBL
Match: B9HSS9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07750g PE=4 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 9.3e-30
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++APPC WSPIPPPELRGEPLE+LSTNGGFV+FDIS  HVEGK+LD TVWS
Sbjct: 196 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVSFDISSRHVEGKKLDKTVWS 255

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK HVK
Sbjct: 256 LLNFYAYVKNHVK 268

BLAST of MELO3C006385 vs. TrEMBL
Match: A0A061EMV9_THECC (Actin-related protein 2/3 complex subunit 2 OS=Theobroma cacao GN=TCM_020969 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.3e-30
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++ PPC WSPIPPPELRGEP E+LSTNGGFV+FDIS  H+EGKRLD TVWS
Sbjct: 240 MDVGSSEKWAKVPPCSWSPIPPPELRGEPFEDLSTNGGFVSFDISSRHIEGKRLDKTVWS 299

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK+HVK
Sbjct: 300 LLNFYAYVKHHVK 312

BLAST of MELO3C006385 vs. TrEMBL
Match: M5XQX0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026663mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-29
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           +DVGSSEKW++APPC WSPIPPPELRGEP E+LSTNGGFV+FDIS  HV GKRLD TVWS
Sbjct: 196 VDVGSSEKWAKAPPCCWSPIPPPELRGEPFEDLSTNGGFVSFDISSRHVRGKRLDKTVWS 255

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVKYHVK
Sbjct: 256 LLNFYAYVKYHVK 268

BLAST of MELO3C006385 vs. TAIR10
Match: AT2G33385.2 (AT2G33385.2 actin-related protein C2B)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-24
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           ++VGS +   +AP C WSPIPP +LRGEP+++L+TN GFV+FDI+  H+EGKRLD TVW+
Sbjct: 197 VEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDITSRHIEGKRLDKTVWN 256

Query: 61  LLNFNAYVKYHVKVS 76
           LLNF A  KYH+K S
Sbjct: 257 LLNFYACAKYHIKCS 271

BLAST of MELO3C006385 vs. TAIR10
Match: AT1G30825.1 (AT1G30825.1 Arp2/3 complex, 34 kD subunit p34-Arc)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-18
Identity = 41/64 (64.06%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 12  APPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWSLLNFNAYVKYH 71
           AP C WSP  P EL G P E LS N GFVTF I   HVEGK+LD TVW+L  F+AYV YH
Sbjct: 205 APSCSWSPTAPQELEGAPKETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYH 264

Query: 72  VKVS 76
           VK S
Sbjct: 265 VKFS 268

BLAST of MELO3C006385 vs. NCBI nr
Match: gi|659076049|ref|XP_008438473.1| (PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.6e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS
Sbjct: 196 MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 255

Query: 61  LLNFNAYVKYHVKVS 76
           LLNFNAYVKYHVK +
Sbjct: 256 LLNFNAYVKYHVKTT 270

BLAST of MELO3C006385 vs. NCBI nr
Match: gi|778678103|ref|XP_004134045.2| (PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-35
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKWS+APPC WSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS
Sbjct: 196 MDVGSSEKWSKAPPCCWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 255

Query: 61  LLNFNAYVKYHVKVS 76
           LLNFNAYVKYHVK +
Sbjct: 256 LLNFNAYVKYHVKTT 270

BLAST of MELO3C006385 vs. NCBI nr
Match: gi|743896312|ref|XP_011041426.1| (PREDICTED: actin-related protein 2/3 complex subunit 2B-like isoform X2 [Populus euphratica])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++APPC WSPIPPPELRGEPLE+LSTNGGFV FDIS HHVEGK+LD TVWS
Sbjct: 194 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVCFDISSHHVEGKKLDKTVWS 253

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK HVK
Sbjct: 254 LLNFYAYVKNHVK 266

BLAST of MELO3C006385 vs. NCBI nr
Match: gi|743896310|ref|XP_011041425.1| (PREDICTED: actin-related protein 2/3 complex subunit 2B-like isoform X1 [Populus euphratica])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++APPC WSPIPPPELRGEPLE+LSTNGGFV FDIS HHVEGK+LD TVWS
Sbjct: 196 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVCFDISSHHVEGKKLDKTVWS 255

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK HVK
Sbjct: 256 LLNFYAYVKNHVK 268

BLAST of MELO3C006385 vs. NCBI nr
Match: gi|224099973|ref|XP_002311692.1| (actin-related protein 2/3 complex 34kDa subunit [Populus trichocarpa])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1

Query: 1   MDVGSSEKWSEAPPCGWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVWS 60
           MDVGSSEKW++APPC WSPIPPPELRGEPLE+LSTNGGFVTFDIS  HVEGK+LD TVWS
Sbjct: 196 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVTFDISSRHVEGKKLDKTVWS 255

Query: 61  LLNFNAYVKYHVK 74
           LLNF AYVK HVK
Sbjct: 256 LLNFYAYVKKHVK 268

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ARC2B_ARATH4.2e-2361.33Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B P... [more]
ARC2A_ARATH4.4e-1764.06Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A P... [more]
Match NameE-valueIdentityDescription
A0A0A0L4Y8_CUCSA1.5e-3594.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134720 PE=4 SV=1[more]
B9HKT7_POPTR3.2e-3086.30Actin-related protein 2/3 complex 34kDa subunit OS=Populus trichocarpa GN=POPTR_... [more]
B9HSS9_POPTR9.3e-3084.93Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07750g PE=4 SV=2[more]
A0A061EMV9_THECC9.3e-3082.19Actin-related protein 2/3 complex subunit 2 OS=Theobroma cacao GN=TCM_020969 PE=... [more]
M5XQX0_PRUPE1.6e-2983.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026663mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33385.22.3e-2461.33 actin-related protein C2B[more]
AT1G30825.12.5e-1864.06 Arp2/3 complex, 34 kD subunit p34-Arc[more]
Match NameE-valueIdentityDescription
gi|659076049|ref|XP_008438473.1|6.6e-3797.33PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis melo][more]
gi|778678103|ref|XP_004134045.2|2.1e-3594.67PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis sativus][more]
gi|743896312|ref|XP_011041426.1|2.7e-3086.30PREDICTED: actin-related protein 2/3 complex subunit 2B-like isoform X2 [Populus... [more]
gi|743896310|ref|XP_011041425.1|2.7e-3086.30PREDICTED: actin-related protein 2/3 complex subunit 2B-like isoform X1 [Populus... [more]
gi|224099973|ref|XP_002311692.1|4.6e-3086.30actin-related protein 2/3 complex 34kDa subunit [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007188ARPC2
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0051015 actin filament binding
molecular_function GO:0005200 structural constituent of cytoskeleton

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006385T1MELO3C006385T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007188Actin-related protein 2/3 complex subunit 2PANTHERPTHR12058ARP2/3 COMPLEX 34 KDA SUBUNITcoord: 1..75
score: 9.4
IPR007188Actin-related protein 2/3 complex subunit 2PFAMPF04045P34-Arccoord: 9..75
score: 9.
NoneNo IPR availableGENE3DG3DSA:3.30.1460.20coord: 7..75
score: 2.6
NoneNo IPR availablePANTHERPTHR12058:SF1ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2Bcoord: 1..75
score: 9.4
NoneNo IPR availableunknownSSF69645Arp2/3 complex subunitscoord: 7..75
score: 3.45

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006385Silver-seed gourdcarmeB0236
MELO3C006385Silver-seed gourdcarmeB0780
MELO3C006385Silver-seed gourdcarmeB0941
MELO3C006385Silver-seed gourdcarmeB1050
MELO3C006385Cucumber (Chinese Long) v3cucmeB147
MELO3C006385Cucumber (Chinese Long) v3cucmeB253
MELO3C006385Watermelon (97103) v2mewmbB448
MELO3C006385Watermelon (97103) v2mewmbB451
MELO3C006385Wax gourdmewgoB514
MELO3C006385Wax gourdmewgoB552
MELO3C006385Melon (DHL92) v3.5.1memeB140
MELO3C006385Melon (DHL92) v3.5.1memeB147
MELO3C006385Cucumber (Gy14) v1cgymeB625
MELO3C006385Cucurbita maxima (Rimu)cmameB580
MELO3C006385Cucurbita maxima (Rimu)cmameB763
MELO3C006385Cucurbita maxima (Rimu)cmameB850
MELO3C006385Cucurbita moschata (Rifu)cmomeB568
MELO3C006385Cucurbita moschata (Rifu)cmomeB832
MELO3C006385Cucurbita moschata (Rifu)cmomeB755
MELO3C006385Wild cucumber (PI 183967)cpimeB144
MELO3C006385Wild cucumber (PI 183967)cpimeB248
MELO3C006385Cucumber (Chinese Long) v2cumeB145
MELO3C006385Cucumber (Chinese Long) v2cumeB253
MELO3C006385Watermelon (Charleston Gray)mewcgB427
MELO3C006385Watermelon (Charleston Gray)mewcgB441
MELO3C006385Watermelon (Charleston Gray)mewcgB445
MELO3C006385Watermelon (97103) v1mewmB486
MELO3C006385Watermelon (97103) v1mewmB459
MELO3C006385Watermelon (97103) v1mewmB461
MELO3C006385Cucurbita pepo (Zucchini)cpemeB316
MELO3C006385Cucurbita pepo (Zucchini)cpemeB585
MELO3C006385Cucurbita pepo (Zucchini)cpemeB702
MELO3C006385Cucurbita pepo (Zucchini)cpemeB813
MELO3C006385Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006385Bottle gourd (USVL1VR-Ls)lsimeB382
MELO3C006385Cucumber (Gy14) v2cgybmeB126
MELO3C006385Cucumber (Gy14) v2cgybmeB216