MELO3C006249 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006249
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA replication helicase dna2, putative
Locationchr6 : 2024054 .. 2024365 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTTGGTACCTTGTTGCTTCTTCGTTTTTGCAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTTCCGTTGATACAGTGGCTTCTTCCATTGACTTGGAGGACGATTCATCTGAATTACAAGGTAGAAAGGGTAACACATTGACTACCAGAGTTGATTCAGCTGCAATGAAAGTCCCTAAACGGGTTTCAGACACTGTAACGAAGACATGCCCTTGTGATTTTCTTGTCTTGGAGGTATATTGCACCTTTTCAAACAGGGTTCGTTTTTGGATTGCTGGTCATTTAGTTGCTCATTGA

mRNA sequence

ATGGACATTTGGTACCTTGTTGCTTCTTCGTTTTTGCAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTTCCGTTGATACAGTGGCTTCTTCCATTGACTTGGAGGACGATTCATCTGAATTACAAGGTAGAAAGGGTAACACATTGACTACCAGAGTTGATTCAGCTGCAATGAAAGTCCCTAAACGGGTTTCAGACACTGTAACGAAGACATGCCCTTGTGATTTTCTTGTCTTGGAGGTATATTGCACCTTTTCAAACAGGGTTCGTTTTTGGATTGCTGGTCATTTAGTTGCTCATTGA

Coding sequence (CDS)

ATGGACATTTGGTACCTTGTTGCTTCTTCGTTTTTGCAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTTCCGTTGATACAGTGGCTTCTTCCATTGACTTGGAGGACGATTCATCTGAATTACAAGGTAGAAAGGGTAACACATTGACTACCAGAGTTGATTCAGCTGCAATGAAAGTCCCTAAACGGGTTTCAGACACTGTAACGAAGACATGCCCTTGTGATTTTCTTGTCTTGGAGGTATATTGCACCTTTTCAAACAGGGTTCGTTTTTGGATTGCTGGTCATTTAGTTGCTCATTGA

Protein sequence

MDIWYLVASSFLQALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVTKTCPCDFLVLEVYCTFSNRVRFWIAGHLVAH*
Homology
[Close]
BLAST of MELO3C006249 vs. TrEMBL
Match: A0A0A0L7S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127240 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 13  QALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT 72
           +ALLELLDQVEDVI+VDTVASSIDL DDSSEL+GR G TLT RVDSAAMK+PKRVSDTV 
Sbjct: 309 KALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVM 368

Query: 73  KTCPCDFLVLEV 85
           K CPCDFLVLEV
Sbjct: 369 KACPCDFLVLEV 380

[Close]
BLAST of MELO3C006249 vs. NCBI nr
Match: gi|659075637|ref|XP_008438250.1| (PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 4.6e-30
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 13  QALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT 72
           +ALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT
Sbjct: 309 KALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT 368

Query: 73  KTCPCDFLVLEV 85
           KTCPCDFLVLEV
Sbjct: 369 KTCPCDFLVLEV 380

[Close]
BLAST of MELO3C006249 vs. NCBI nr
Match: gi|778677629|ref|XP_011650825.1| (PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 isoform X2 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 13  QALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT 72
           +ALLELLDQVEDVI+VDTVASSIDL DDSSEL+GR G TLT RVDSAAMK+PKRVSDTV 
Sbjct: 309 KALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVM 368

Query: 73  KTCPCDFLVLEV 85
           K CPCDFLVLEV
Sbjct: 369 KACPCDFLVLEV 380

[Close]
BLAST of MELO3C006249 vs. NCBI nr
Match: gi|778677626|ref|XP_011650824.1| (PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-25
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 13  QALLELLDQVEDVISVDTVASSIDLEDDSSELQGRKGNTLTTRVDSAAMKVPKRVSDTVT 72
           +ALLELLDQVEDVI+VDTVASSIDL DDSSEL+GR G TLT RVDSAAMK+PKRVSDTV 
Sbjct: 309 KALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVM 368

Query: 73  KTCPCDFLVLEV 85
           K CPCDFLVLEV
Sbjct: 369 KACPCDFLVLEV 380

The following BLAST results are available for this feature:
BLAST of MELO3C006249 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7S1_CUCSA2.4e-2586.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127240 PE=4 SV=1[more]
BLAST of MELO3C006249 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075637|ref|XP_008438250.1|4.6e-3098.61PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 [Cucumis melo][more]
gi|778677629|ref|XP_011650825.1|3.4e-2586.11PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 isoform X2 [Cucu... [more]
gi|778677626|ref|XP_011650824.1|3.4e-2586.11PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [Cucu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006308 DNA catabolic process
biological_process GO:0033567 DNA replication, Okazaki fragment processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0043142 single-stranded DNA-dependent ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006249T1MELO3C006249T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006249Bhi01G000098Wax gourdmewgoB531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006249Cucurbita pepo (Zucchini)cpemeB141
MELO3C006249Cucurbita pepo (Zucchini)cpemeB315
MELO3C006249Cucurbita pepo (Zucchini)cpemeB585
MELO3C006249Cucurbita pepo (Zucchini)cpemeB813
MELO3C006249Bottle gourd (USVL1VR-Ls)lsimeB034
MELO3C006249Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006249Bottle gourd (USVL1VR-Ls)lsimeB386
MELO3C006249Bottle gourd (USVL1VR-Ls)lsimeB445
MELO3C006249Cucumber (Gy14) v2cgybmeB200
MELO3C006249Cucumber (Gy14) v2cgybmeB205
MELO3C006249Cucumber (Gy14) v2cgybmeB208
MELO3C006249Cucumber (Gy14) v2cgybmeB435
MELO3C006249Silver-seed gourdcarmeB0236
MELO3C006249Silver-seed gourdcarmeB0622
MELO3C006249Silver-seed gourdcarmeB0941
MELO3C006249Silver-seed gourdcarmeB1049
MELO3C006249Cucumber (Chinese Long) v3cucmeB236
MELO3C006249Cucumber (Chinese Long) v3cucmeB241
MELO3C006249Cucumber (Chinese Long) v3cucmeB244
MELO3C006249Cucumber (Chinese Long) v3cucmeB506
MELO3C006249Watermelon (97103) v2mewmbB428
MELO3C006249Watermelon (97103) v2mewmbB434
MELO3C006249Watermelon (97103) v2mewmbB445
MELO3C006249Wax gourdmewgoB513
MELO3C006249Wax gourdmewgoB522
MELO3C006249Melon (DHL92) v3.5.1memeB141
MELO3C006249Melon (DHL92) v3.5.1memeB054
MELO3C006249Cucumber (Gy14) v1cgymeB439
MELO3C006249Cucumber (Gy14) v1cgymeB533
MELO3C006249Cucumber (Gy14) v1cgymeB594
MELO3C006249Cucurbita maxima (Rimu)cmameB242
MELO3C006249Cucurbita maxima (Rimu)cmameB343
MELO3C006249Cucurbita maxima (Rimu)cmameB763
MELO3C006249Cucurbita maxima (Rimu)cmameB767
MELO3C006249Cucurbita maxima (Rimu)cmameB852
MELO3C006249Cucurbita moschata (Rifu)cmomeB230
MELO3C006249Cucurbita moschata (Rifu)cmomeB336
MELO3C006249Cucurbita moschata (Rifu)cmomeB755
MELO3C006249Cucurbita moschata (Rifu)cmomeB834
MELO3C006249Wild cucumber (PI 183967)cpimeB236
MELO3C006249Wild cucumber (PI 183967)cpimeB230
MELO3C006249Wild cucumber (PI 183967)cpimeB238
MELO3C006249Wild cucumber (PI 183967)cpimeB496
MELO3C006249Cucumber (Chinese Long) v2cumeB236
MELO3C006249Cucumber (Chinese Long) v2cumeB241
MELO3C006249Cucumber (Chinese Long) v2cumeB494
MELO3C006249Watermelon (Charleston Gray)mewcgB409
MELO3C006249Watermelon (Charleston Gray)mewcgB427
MELO3C006249Watermelon (Charleston Gray)mewcgB438
MELO3C006249Watermelon (97103) v1mewmB456
MELO3C006249Watermelon (97103) v1mewmB461
MELO3C006249Watermelon (97103) v1mewmB484