MELO3C006132.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006132.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLIM domain-containing protein
Locationchr06 : 1251861 .. 1253210 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTCTTCCCATTCTCTATTTCTATCGATCCCTTTTTCATAATCTTGTCTGAGATCTAATCCTCAGACACATTTGATAAACAATTGTATTTGTTTGTTAGTTTGTTGTTCTTTTGTAATTATACCCTTCTTGCAGTTTGTCGGAACGCTACCGTTTTTCGGTTCGAGTTCGTTGTTGTCGTAAAAAACAGAGAAGGAATAAAGATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAATTGCTTTCCCTTGAAGGGAATCCTTATCATAAATCCTGCTTCAAATGTAGCCACTGCAAAGGCACTCTTTCGGTACGTTTTCTTTCTTTCCCTTTCATTCGTTCTTACTACGTCGTTCATTATGATATCGGTAATTTAACTCGAGTCGATCCATATAACAGATGAGTAGCTACTCATGGATGGATGGTGTCTTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTTAGCAAGAATTTTCAAAATGGTAAATATATTTTTGTTATTATACTTCTTTTCAAATCAACCTTTTGTTTTTAAGGAAAAAGAAGCCTTCCTAACATTCTCTCATTTTCATTCTATTGAAATGGCAACAGCCAAGCCTTCTGAGAAGCAAAATGATCTGGTATGCTCTCATTCTTTTCATTTTCCATGCAGTCAGCACGGTTTGATGTTTAGTCTTTTTTTTTTGTAAATTTTGTATTTAAATCACTCACAAACATGTCATAAAGCGTATAAGATTTTTCTTTTACATAGTTTAGGGATGTAGTCTCACAATATATACTCATAACTAGACGTATAACTTTGTAACTTTCAAAACGTGTAGCAGTCAAGAGCTCCTAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCAGCCTGCACGAAAACGGTTTATCCGTTGGAGAAGGTCTACAGTTCTTCATTTTTTTTCTTCTCAAAAGTTATATATATATATATAAGTAGAATGTTTCTAGATTTGTTGACTGATTAAAAGTTCTTTTGGTTCCTAAATTAAAAAAAAAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTAACACACTCTTCATATGCTGCTCTTGATGGAGTGTTGTACTGTAAGCATCATTTTGCTCAACTCTTCATGATCAAAGGAAACTACAACCATGTTCTTGAAGCTGCAGCAAACAAGAAAGCTACCACGCCGCCTCCCGAACCAGCAGAGGAAGAAGAGGGCGCCACCGAAGCTCAGCCGCAGGCCGATGAAGCAGTAGAGCAAACTTAA

mRNA sequence

AAAGTCTTCCCATTCTCTATTTCTATCGATCCCTTTTTCATAATCTTGTCTGAGATCTAATCCTCAGACACATTTGATAAACAATTGTATTTGTTTGTTAGTTTGTTGTTCTTTTGTAATTATACCCTTCTTGCAGTTTGTCGGAACGCTACCGTTTTTCGGTTCGAGTTCGTTGTTGTCGTAAAAAACAGAGAAGGAATAAAGATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAATTGCTTTCCCTTGAAGGGAATCCTTATCATAAATCCTGCTTCAAATGTAGCCACTGCAAAGGCACTCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCTTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTTAGCAAGAATTTTCAAAATGGTAAATATATTTTTTCAAGAGCTCCTAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCAGCCTGCACGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTAACACACTCTTCATATGCTGCTCTTGATGGAGTGTTGTACTGTAAGCATCATTTTGCTCAACTCTTCATGATCAAAGGAAACTACAACCATGTTCTTGAAGCTGCAGCAAACAAGAAAGCTACCACGCCGCCTCCCGAACCAGCAGAGGAAGAAGAGGGCGCCACCGAAGCTCAGCCGCAGGCCGATGAAGCAGTAGAGCAAACTTAA

Coding sequence (CDS)

ATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAATTGCTTTCCCTTGAAGGGAATCCTTATCATAAATCCTGCTTCAAATGTAGCCACTGCAAAGGCACTCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCTTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTTAGCAAGAATTTTCAAAATGGTAAATATATTTTTTCAAGAGCTCCTAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCAGCCTGCACGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTAACACACTCTTCATATGCTGCTCTTGATGGAGTGTTGTACTGTAAGCATCATTTTGCTCAACTCTTCATGATCAAAGGAAACTACAACCATGTTCTTGAAGCTGCAGCAAACAAGAAAGCTACCACGCCGCCTCCCGAACCAGCAGAGGAAGAAGAGGGCGCCACCGAAGCTCAGCCGCAGGCCGATGAAGCAGTAGAGCAAACTTAA

Protein sequence

MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQNGKYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEPAEEEEGATEAQPQADEAVEQT
Homology
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BLAST of MELO3C006132.2 vs. NCBI nr
Match: XP_008438078.1 (PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo])

HSP 1 Score: 370.9 bits (951), Expect = 2.7e-99
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK-----YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQN K        SRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180

Query: 181 XXXXXXXXXXXXXATEAQPQADEAVEQT 204
           XXXXXXXXXXXXXATEAQPQADEAVEQT
Sbjct: 181 XXXXXXXXXXXXXATEAQPQADEAVEQT 208

[Close]
BLAST of MELO3C006132.2 vs. NCBI nr
Match: XP_011650764.1 (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus] >KGN56538.1 hypothetical protein Csa_3G122620 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 9.6e-97
Identity = 190/209 (90.91%), Postives = 191/209 (91.39%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK-----YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQN K        SRAPSKLSSMFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA      
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 XXXXXXXXXXXXXATEAQPQADEA-VEQT 204
           XXXXXXXXXXXX ATEAQPQADEA VEQT
Sbjct: 181 XXXXXXXXXXXXGATEAQPQADEAPVEQT 209

[Close]
BLAST of MELO3C006132.2 vs. NCBI nr
Match: XP_004134333.2 (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 9.6e-97
Identity = 190/210 (90.48%), Postives = 192/210 (91.43%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK------YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120
           HFEQLFKESGNFSKNFQN K       + SRAPSKLSSMFSGTQDKCAAC+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXX 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA     
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 XXXXXXXXXXXXXXATEAQPQADEA-VEQT 204
            XXXXXXXXXXXX ATEAQPQADEA VEQT
Sbjct: 181 AXXXXXXXXXXXXGATEAQPQADEAPVEQT 210

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BLAST of MELO3C006132.2 vs. NCBI nr
Match: XP_023528481.1 (LIM domain-containing protein PLIM2c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.7 bits (883), Expect = 2.1e-91
Identity = 176/209 (84.21%), Postives = 184/209 (88.04%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK------YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ  K       + SRAPSKLSSMFSGTQDKC+ACTKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDMQSRAPSKLSSMFSGTQDKCSACTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXX 180
           TLEGECYHKNCFRCAHGGC+LTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA   XX
Sbjct: 121 TLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANXX 180

Query: 181 XXXXXXXXXXXXXXATEAQPQADEAVEQT 204
           XXXXXXXX        +A+ Q++E   +T
Sbjct: 181 XXXXXXXXVEEDEAKGDAEAQSEEGAGET 209

[Close]
BLAST of MELO3C006132.2 vs. NCBI nr
Match: XP_022975113.1 (LIM domain-containing protein PLIM2c-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 1.0e-90
Identity = 160/174 (91.95%), Postives = 163/174 (93.68%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK-----YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ  K        SRAP+K S+MFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDSSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 174

[Close]
BLAST of MELO3C006132.2 vs. TAIR10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 297.4 bits (760), Expect = 6.9e-81
Identity = 135/172 (78.49%), Postives = 150/172 (87.21%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGKY---IFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTLE 120
           HFEQLFKESGNFSKNFQ GK      +R PSK+SS+F GTQDKCAAC KTVYPLEK+ +E
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQME 120

Query: 121 GECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           GEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+A
Sbjct: 121 GECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQA 172

[Close]
BLAST of MELO3C006132.2 vs. TAIR10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-77
Identity = 133/174 (76.44%), Postives = 148/174 (85.06%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQNGKY-----IFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ GK        +R PSKLSS FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +A
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQA 174

[Close]
BLAST of MELO3C006132.2 vs. TAIR10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 260.8 bits (665), Expect = 7.2e-70
Identity = 116/177 (65.54%), Postives = 147/177 (83.05%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQN-GKYI-------FSRAPSKLSSMFSGTQDKCAACTKTVYPLE 120
           HFEQLFKESG+FSKNFQ+  K +        +R PS+L+ MFSGTQDKCA CTKTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKS 177

[Close]
BLAST of MELO3C006132.2 vs. TAIR10
Match: AT3G61230.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 239.2 bits (609), Expect = 2.2e-63
Identity = 117/173 (67.63%), Postives = 131/173 (75.72%), Query Frame = 0 

Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+                       TH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRXXXXXXXXXXXXXXXXXXXXXXXTH 62

Query: 62  FEQLFKESGNFSKNFQN-GKYIFS----RAPSKLSSMFSGTQDKCAACTKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQ  GK   S    +AP++LSS FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+A
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQA 175

[Close]
BLAST of MELO3C006132.2 vs. TAIR10
Match: AT3G55770.7 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-63
Identity = 113/210 (53.81%), Postives = 143/210 (68.10%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQN-------GKYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+            +R PS+++  FSGTQ+KCA C+KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 ----------------------------------VTLEGECYHKNCFRCAHGGCHLTHSS 170
                                             VT+E + YHK+CF+C+HGGC ++ S+
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

[Close]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match: sp|Q1ECF5|PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.2e-79
Identity = 135/172 (78.49%), Postives = 150/172 (87.21%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGKY---IFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTLE 120
           HFEQLFKESGNFSKNFQ GK      +R PSK+SS+F GTQDKCAAC KTVYPLEK+ +E
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQME 120

Query: 121 GECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           GEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+A
Sbjct: 121 GECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQA 172

[Close]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match: sp|O80839|PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.9e-76
Identity = 133/174 (76.44%), Postives = 148/174 (85.06%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQNGKY-----IFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ GK        +R PSKLSS FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +A
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQA 174

[Close]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match: sp|O04193|WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 116/177 (65.54%), Postives = 147/177 (83.05%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQN-GKYI-------FSRAPSKLSSMFSGTQDKCAACTKTVYPLE 120
           HFEQLFKESG+FSKNFQ+  K +        +R PS+L+ MFSGTQDKCA CTKTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKS 177

[Close]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match: sp|Q9M047|WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 9.2e-67
Identity = 113/176 (64.20%), Postives = 143/176 (81.25%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQN-------GKYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+            +R PS+++  FSGTQ+KCA C+KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           VT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKS 176

[Close]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match: sp|Q500W4|PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.0e-62
Identity = 117/173 (67.63%), Postives = 131/173 (75.72%), Query Frame = 0 

Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+                       TH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRXXXXXXXXXXXXXXXXXXXXXXXTH 62

Query: 62  FEQLFKESGNFSKNFQN-GKYIFS----RAPSKLSSMFSGTQDKCAACTKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQ  GK   S    +AP++LSS FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+A
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQA 175

[Close]
BLAST of MELO3C006132.2 vs. TrEMBL
Match: tr|A0A1S3AW36|A0A1S3AW36_CUCME (LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC103483293 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.8e-99
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK-----YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQN K        SRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180

Query: 181 XXXXXXXXXXXXXATEAQPQADEAVEQT 204
           XXXXXXXXXXXXXATEAQPQADEAVEQT
Sbjct: 181 XXXXXXXXXXXXXATEAQPQADEAVEQT 208

[Close]
BLAST of MELO3C006132.2 vs. TrEMBL
Match: tr|A0A0A0L4A1|A0A0A0L4A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 6.4e-97
Identity = 190/209 (90.91%), Postives = 191/209 (91.39%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQNGK-----YIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQN K        SRAPSKLSSMFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAXXXXXX 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA      
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 XXXXXXXXXXXXXATEAQPQADEA-VEQT 204
           XXXXXXXXXXXX ATEAQPQADEA VEQT
Sbjct: 181 XXXXXXXXXXXXGATEAQPQADEAPVEQT 209

[Close]
BLAST of MELO3C006132.2 vs. TrEMBL
Match: tr|A0A1S3AVG8|A0A1S3AVG8_CUCME (LIM domain-containing protein PLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103483289 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.7e-87
Identity = 151/173 (87.28%), Postives = 159/173 (91.91%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQ----NGKYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTL 120
           HFEQLFKESGNFSKNFQ      +   +R PSKLSSMF GTQDKC+ CTKTVYPLEKVTL
Sbjct: 61  HFEQLFKESGNFSKNFQTKPSERQNDLTRTPSKLSSMFCGTQDKCSVCTKTVYPLEKVTL 120

Query: 121 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           EGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEA
Sbjct: 121 EGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEA 173

[Close]
BLAST of MELO3C006132.2 vs. TrEMBL
Match: tr|A0A0A0L6A8|A0A0A0L6A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122580 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.7e-87
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQ----NGKYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTL 120
           HFEQLFKESGNFSKNFQ    +     +R PSKLSSMFSGTQDKC+ CTKTVYPLEKV+L
Sbjct: 61  HFEQLFKESGNFSKNFQTKSSDKPNDLTRTPSKLSSMFSGTQDKCSVCTKTVYPLEKVSL 120

Query: 121 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           EGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEA
Sbjct: 121 EGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEA 173

[Close]
BLAST of MELO3C006132.2 vs. TrEMBL
Match: tr|A0A0B0MJJ0|A0A0B0MJJ0_GOSAR (Pollen-specific SF3 OS=Gossypium arboreum OX=29729 GN=F383_22062 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.7e-81
Identity = 139/171 (81.29%), Postives = 155/171 (90.64%), Query Frame = 0 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTV+VV++++LEG PYHK+CFKCSHCKG L M++YSWMDG+LYCK 
Sbjct: 1   MAFTGTLDKCKACDKTVHVVDMMTLEGVPYHKTCFKCSHCKGNLQMTTYSWMDGILYCKP 60

Query: 61  HFEQLFKESGNFSKNFQNG--KYIFSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVTLEG 120
           HFEQLFKESGNFSKNFQ G      +R PSKLSS+FSGT DKCAAC KTVYPLEKVT+EG
Sbjct: 61  HFEQLFKESGNFSKNFQTGTRPTELNRTPSKLSSLFSGTLDKCAACEKTVYPLEKVTMEG 120

Query: 121 ECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEA 170
           EC+HK CFRCAHGGC LTHSSYAALDGVLYCKHHFAQLFM+KGNYNHVL+A
Sbjct: 121 ECFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMVKGNYNHVLQA 171

The following BLAST results are available for this feature:
BLAST of MELO3C006132.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438078.12.7e-9995.67PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo][more]
XP_011650764.19.6e-9790.91PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus... [more]
XP_004134333.29.6e-9790.48PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus... [more]
XP_023528481.12.1e-9184.21LIM domain-containing protein PLIM2c-like [Cucurbita pepo subsp. pepo][more]
XP_022975113.11.0e-9091.95LIM domain-containing protein PLIM2c-like [Cucurbita maxima][more]
BLAST of MELO3C006132.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01780.16.9e-8178.49GATA type zinc finger transcription factor family protein[more]
AT2G45800.12.7e-7776.44GATA type zinc finger transcription factor family protein[more]
AT2G39900.17.2e-7065.54GATA type zinc finger transcription factor family protein[more]
AT3G61230.12.2e-6367.63GATA type zinc finger transcription factor family protein[more]
AT3G55770.78.5e-6353.81GATA type zinc finger transcription factor family protein[more]
BLAST of MELO3C006132.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1ECF5|PLI2B_ARATH1.2e-7978.49LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
sp|O80839|PLI2A_ARATH4.9e-7676.44LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
sp|O04193|WLI2A_ARATH1.3e-6865.54LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
sp|Q9M047|WLI2B_ARATH9.2e-6764.20LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
sp|Q500W4|PLI2C_ARATH4.0e-6267.63LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P... [more]
BLAST of MELO3C006132.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AW36|A0A1S3AW36_CUCME1.8e-9995.67LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC10348329... [more]
tr|A0A0A0L4A1|A0A0A0L4A1_CUCSA6.4e-9790.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1[more]
tr|A0A1S3AVG8|A0A1S3AVG8_CUCME2.7e-8787.28LIM domain-containing protein PLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10348328... [more]
tr|A0A0A0L6A8|A0A0A0L6A8_CUCSA2.7e-8787.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122580 PE=4 SV=1[more]
tr|A0A0B0MJJ0|A0A0B0MJJ0_GOSAR1.7e-8181.29Pollen-specific SF3 OS=Gossypium arboreum OX=29729 GN=F383_22062 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006132.2.1MELO3C006132.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 9..61
e-value: 1.1E-12
score: 58.2
coord: 100..152
e-value: 7.2E-13
score: 58.8
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 101..156
e-value: 1.1E-10
score: 41.5
coord: 10..65
e-value: 3.3E-13
score: 49.6
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 99..159
score: 12.395
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.484
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 6..74
e-value: 2.9E-19
score: 71.0
coord: 95..165
e-value: 1.1E-18
score: 69.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..203
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..197
NoneNo IPR availablePANTHERPTHR24206:SF22LIM DOMAIN-CONTAINING PROTEIN PLIM2A-RELATEDcoord: 1..197
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 127..166
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 93..126