MELO3C006122 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006122
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Sperm motility kinase Z
Location	chr6 : 1198166 .. 1199034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCCAACGAGTTTCGAGAGTCGAGACTGGAGAATTCGAAAGAGTTCTTCGTCTCTCATCTTTTAAGTTCTCATCTCTCTCACCCCCAATCTCTCGTACTTTGCATCACATTATCATTCTCCACAATGGCTTTGAGAAAATTGGATAACTTCCCTATGCATAGATATACTCAATACCCACAGTTCGAAATCTTCCTACTGGAGGTATGAGACCGCTTCCTACGGTTCAGGCGCTGTGCAAATTGGTTACACAGCCTTGACATGGTGCAACATCCATGGACTTAGCCATGCGGAGATCTGTGCTAATTACCTCACAGCATTATCTTCTCTGTTCGATTATCTTTTTGATGTAGGAGTCACTGTAATGAAGTTCGTTGGATATGAAACAACTAAGCGAAACGGGTTTTCAGAAATGGTATCTACCGGAAATCCTGTAATGCCTTGGATTCAAAACCATCGCTCCATGGCTCTCATAGCTCAAGCTATCCTTATTCTTTTTGAGGATGTAAGCGATAGAGTGAGTTATGAAGACTCGATGAGAAACATAGCCATTGGATTGAAAGCAGCGGTGGGTTATGTAGGGAATGTAGGACCGACTGATGATTTTTGTGTGGATTTTAACGCTGCTTTCATGATTAAACGAATGCTTGGAAGTTCTCAATCGCTAGGAGCAAGTGTGATGATGGAGTTGATAGGAAACAGAAATGCTTCAGGTCCTGTTGGAGCAGTTCGTAGCTATGTTCGTGAAATCTTGAACTGGGCAGGAATGGATTATTTTGTTTGCATTTATGATACTCTTGTATTACCAAAATCTCCTGTTCTTAAGGATTGTAGAGTTCTTGCAGAAGTTGGAAAATATTGCTGA

mRNA sequence

ATGGAAACCCAACGAGTTTCGAGAGTCGAGACTGGAGAATTCGAAAGAGTTCTTCGTCTCTCATCTTTTAAGTTCTCATCTCTCTCACCCCCAATCTCTCATATACTCAATACCCACAGTTCGAAATCTTCCTACTGGAGGTATGAGACCGCTTCCTACGGTTCAGGCGCTGTGCAAATTGGTTACACAGCCTTGACATGGTGCAACATCCATGGACTTAGCCATGCGGAGATCTGTGCTAATTACCTCACAGCATTATCTTCTCTGTTCGATTATCTTTTTGATGTAGGAGTCACTGTAATGAAGTTCGTTGGATATGAAACAACTAAGCGAAACGGGTTTTCAGAAATGGTATCTACCGGAAATCCTGTAATGCCTTGGATTCAAAACCATCGCTCCATGGCTCTCATAGCTCAAGCTATCCTTATTCTTTTTGAGGATGTAAGCGATAGAGTGAGTTATGAAGACTCGATGAGAAACATAGCCATTGGATTGAAAGCAGCGGTGGGTTATGTAGGGAATGTAGGACCGACTGATGATTTTTGTGTGGATTTTAACGCTGCTTTCATGATTAAACGAATGCTTGGAAGTTCTCAATCGCTAGGAGCAAGTGTGATGATGGAGTTGATAGGAAACAGAAATGCTTCAGGTCCTGTTGGAGCAGTTCGTAGCTATGTTCGTGAAATCTTGAACTGGGCAGGAATGGATTATTTTGTTTGCATTTATGATACTCTTGTATTACCAAAATCTCCTGTTCTTAAGGATTGTAGAGTTCTTGCAGAAGTTGGAAAATATTGCTGA

Coding sequence (CDS)

ATGGAAACCCAACGAGTTTCGAGAGTCGAGACTGGAGAATTCGAAAGAGTTCTTCGTCTCTCATCTTTTAAGTTCTCATCTCTCTCACCCCCAATCTCTCATATACTCAATACCCACAGTTCGAAATCTTCCTACTGGAGGTATGAGACCGCTTCCTACGGTTCAGGCGCTGTGCAAATTGGTTACACAGCCTTGACATGGTGCAACATCCATGGACTTAGCCATGCGGAGATCTGTGCTAATTACCTCACAGCATTATCTTCTCTGTTCGATTATCTTTTTGATGTAGGAGTCACTGTAATGAAGTTCGTTGGATATGAAACAACTAAGCGAAACGGGTTTTCAGAAATGGTATCTACCGGAAATCCTGTAATGCCTTGGATTCAAAACCATCGCTCCATGGCTCTCATAGCTCAAGCTATCCTTATTCTTTTTGAGGATGTAAGCGATAGAGTGAGTTATGAAGACTCGATGAGAAACATAGCCATTGGATTGAAAGCAGCGGTGGGTTATGTAGGGAATGTAGGACCGACTGATGATTTTTGTGTGGATTTTAACGCTGCTTTCATGATTAAACGAATGCTTGGAAGTTCTCAATCGCTAGGAGCAAGTGTGATGATGGAGTTGATAGGAAACAGAAATGCTTCAGGTCCTGTTGGAGCAGTTCGTAGCTATGTTCGTGAAATCTTGAACTGGGCAGGAATGGATTATTTTGTTTGCATTTATGATACTCTTGTATTACCAAAATCTCCTGTTCTTAAGGATTGTAGAGTTCTTGCAGAAGTTGGAAAATATTGCTGA

Protein sequence

METQRVSRVETGEFERVLRLSSFKFSSLSPPISHILNTHSSKSSYWRYETASYGSGAVQIGYTALTWCNIHGLSHAEICANYLTALSSLFDYLFDVGVTVMKFVGYETTKRNGFSEMVSTGNPVMPWIQNHRSMALIAQAILILFEDVSDRVSYEDSMRNIAIGLKAAVGYVGNVGPTDDFCVDFNAAFMIKRMLGSSQSLGASVMMELIGNRNASGPVGAVRSYVREILNWAGMDYFVCIYDTLVLPKSPVLKDCRVLAEVGKYC*

Homology

[Close]

BLAST of MELO3C006122 vs. TrEMBL
Match: A0A0A0L6A6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122530 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.6e-41
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 158 MRNIAIGLKAAVGYVGNVGPTDDFCVDFNAAFMIKRMLGSSQSLGASVMMELIGNRNASG 217
           MRN AIGLKAAVGYVGN+GPTDDFCV+FNAAF+IKRMLGSS SL ASVMMELI NRNA G
Sbjct: 1   MRNRAIGLKAAVGYVGNLGPTDDFCVEFNAAFIIKRMLGSSVSLRASVMMELIRNRNARG 60

Query: 218 PVGAVRSYVREILNWAGMDYFVCIYDTLVLPKSPVLKDCRVLAEVG 264
           PVGAV S+V EILNWA MD  VCIYDTLVLPKS VLKDCRVLAEVG
Sbjct: 61  PVGAVCSHVCEILNWAEMDDMVCIYDTLVLPKSHVLKDCRVLAEVG 106

[Close]

BLAST of MELO3C006122 vs. TrEMBL
Match: G7IL01_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g032740 PE=4 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 3.7e-06
Identity = 42/132 (31.82%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 138 AQAILILFEDVSDRVSYEDSMRNIAIGLKAAVGYVGNVGPTDDFCVDFNAAFMIKRMLGS 197
           A  I++L +  +D ++Y   M      LK  +GY  ++    DF  DF +A  I+  LG 
Sbjct: 131 ACCIIMLLKKFTDEINYHTFMIEFINELKEIIGYDADL----DFPFDFKSANAIRTNLGG 190

Query: 198 SQSLGAS----VMMELIGNRNASGPVGAVRSYVREILNWAGMDYFVCIYDTLVLPKSPVL 257
           S  L       +M + I +      +G V  Y+  +L W+ M +F+ I D LV  KSPV 
Sbjct: 191 SSRLCQDTIRFIMKKGIHSVETDEEIGVVCQYLYNVLAWSEMRHFILINDMLVKAKSPVF 250

Query: 258 KDCRVLAEVGKY 266
            D RV  EV  +
Sbjct: 251 FDPRVSKEVNDF 258

[Close]

BLAST of MELO3C006122 vs. NCBI nr
Match: gi|700201396|gb|KGN56529.1| (hypothetical protein Csa_3G122530 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 158 MRNIAIGLKAAVGYVGNVGPTDDFCVDFNAAFMIKRMLGSSQSLGASVMMELIGNRNASG 217
           MRN AIGLKAAVGYVGN+GPTDDFCV+FNAAF+IKRMLGSS SL ASVMMELI NRNA G
Sbjct: 1   MRNRAIGLKAAVGYVGNLGPTDDFCVEFNAAFIIKRMLGSSVSLRASVMMELIRNRNARG 60

Query: 218 PVGAVRSYVREILNWAGMDYFVCIYDTLVLPKSPVLKDCRVLAEVG 264
           PVGAV S+V EILNWA MD  VCIYDTLVLPKS VLKDCRVLAEVG
Sbjct: 61  PVGAVCSHVCEILNWAEMDDMVCIYDTLVLPKSHVLKDCRVLAEVG 106

[Close]

BLAST of MELO3C006122 vs. NCBI nr
Match: gi|922386180|ref|XP_003594635.2| (hypothetical protein MTR_2g032740 [Medicago truncatula])

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 42/132 (31.82%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 138 AQAILILFEDVSDRVSYEDSMRNIAIGLKAAVGYVGNVGPTDDFCVDFNAAFMIKRMLGS 197
           A  I++L +  +D ++Y   M      LK  +GY  ++    DF  DF +A  I+  LG 
Sbjct: 131 ACCIIMLLKKFTDEINYHTFMIEFINELKEIIGYDADL----DFPFDFKSANAIRTNLGG 190

Query: 198 SQSLGAS----VMMELIGNRNASGPVGAVRSYVREILNWAGMDYFVCIYDTLVLPKSPVL 257
           S  L       +M + I +      +G V  Y+  +L W+ M +F+ I D LV  KSPV 
Sbjct: 191 SSRLCQDTIRFIMKKGIHSVETDEEIGVVCQYLYNVLAWSEMRHFILINDMLVKAKSPVF 250

Query: 258 KDCRVLAEVGKY 266
            D RV  EV  +
Sbjct: 251 FDPRVSKEVNDF 258

The following BLAST results are available for this feature:

BLAST of MELO3C006122 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6A6_CUCSA	4.6e-41	85.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122530 PE=4 SV=1	[more]
G7IL01_MEDTR	3.7e-06	31.82	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g032740 PE=4 SV=2	[more]

BLAST of MELO3C006122 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201396\|gb\|KGN56529.1\|	6.6e-41	85.85	hypothetical protein Csa_3G122530 [Cucumis sativus]	[more]
gi\|922386180\|ref\|XP_003594635.2\|	5.3e-06	31.82	hypothetical protein MTR_2g032740 [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009317	acetyl-CoA carboxylase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006122T1	MELO3C006122T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006122	Csa3G122530	Cucumber (Chinese Long) v2	cumeB236
MELO3C006122	CSPI03G08900	Wild cucumber (PI 183967)	cpimeB230
MELO3C006122	CsGy3G008980	Cucumber (Gy14) v2	cgybmeB200
MELO3C006122	CsaV3_3G009040	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006122	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006122	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006122	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006122	Silver-seed gourd	carmeB0497
MELO3C006122	Silver-seed gourd	carmeB0647
MELO3C006122	Watermelon (97103) v2	mewmbB434
MELO3C006122	Wax gourd	mewgoB533
MELO3C006122	Melon (DHL92) v3.5.1	memeB150
MELO3C006122	Cucumber (Gy14) v1	cgymeB439
MELO3C006122	Cucurbita maxima (Rimu)	cmameB242
MELO3C006122	Cucurbita maxima (Rimu)	cmameB763
MELO3C006122	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006122	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006122	Watermelon (Charleston Gray)	mewcgB427
MELO3C006122	Watermelon (Charleston Gray)	mewcgB430
MELO3C006122	Watermelon (97103) v1	mewmB461
MELO3C006122	Watermelon (97103) v1	mewmB466