MELO3C006117 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006117
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_35
Location	chr6 : 1167297 .. 1168815 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACATAAATTTGAGCTAGGGTTTAAGAAGACTGACGTTGGGGATATCATCGAGCAAATTTCTGGCGGCAGATCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACGTCTAGTCATGGATTAATTTTTCGAATAATTTGTTTGTTCGTTCGTTCGTTCTAGTTGATTCACTTTTTTCGTGGTTCTTATGTAATGTTCTTACTTGCCGAATTGAATAGGGGTAAAAAAACAAGAAAAAGAAAAGGCTGCAAAGAAGCTTCAAGCAAAGAAGAATAACATGAAAGTAAATCTTTCTCTTTCACTCTATTGAATCCAGAAGAGTAGAATTCATTTACAGAAAAATGTCCAAGTATTAGGGGAAGAGAATGAATGATTATTGTTTCTATTCGGTTTACACTTTAGTAATTTAGGAATTTCATCATATGAGTAATTTTCTAGTTTTTACATGCTCCAGTAGGATTGTGAAGTTCAATGACTTTCTACTGCTTAATTTGTTGGGTAATTTGGCAATTTTCGATGGATTTGAAACAAGTTCTGTTTGTTTGTGTGCTTGTTCTTTTAATATCATTCGAAAGTCTCGTGATTTTCGTATAATTTTGTTCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCTTGTATGGATGAATTGACATATTGATTTAGTTTTTTATATTTGTAATAGAAAGAAAAAACCTCCATTCGTAGTACGCTTTGATCTTCACTCGCTCTCTTTTGATCTCTAATGTGTTGAGTACTGATTCGAATCTGATTTACAAGAGATTCTTATTCA

mRNA sequence

ATTACATAAATTTGAGCTAGGGTTTAAGAAGACTGACGTTGGGGATATCATCGAGCAAATTTCTGGCGGCAGATCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGTAAAAAAACAAGAAAAAGAAAAGGCTGCAAAGAAGCTTCAAGCAAAGAAGAATAACATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCTTGTATGGATGAATTGACATATTGATTTAGTTTTTTATATTTGTAATAGAAAGAAAAAACCTCCATTCGTAGTACGCTTTGATCTTCACTCGCTCTCTTTTGATCTCTAATGTGTTGAGTACTGATTCGAATCTGATTTACAAGAGATTCTTATTCA

Coding sequence (CDS)

ATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGTAAAAAAACAAGAAAAAGAAAAGGCTGCAAAGAAGCTTCAAGCAAAGAAGAATAACATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGA

Protein sequence

MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK*

Homology

[Close]

BLAST of MELO3C006117 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-33
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKNSLSRRKKQYEFDLQR +KQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQR-EKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKK 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKASQAM+LDK
Sbjct: 61 KVKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
           MSKKNSLSRRKKQYEFDL+R +K EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+
Sbjct: 42  MSKKNSLSRRKKQYEFDLRR-EKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKR 101

Query: 61  KVKTKLTAAAKAKASQAMDLDK 83
           KVKTKLTA AKAKA+QAM+LDK
Sbjct: 102 KVKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of MELO3C006117 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-27
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQYEFDLQR +KQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQR-EKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. TrEMBL
Match: A0A0B2QZ50_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQYEFDLQR +KQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQR-EKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. TrEMBL
Match: I1KIC3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQYEFDLQR +KQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQR-EKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-23
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQ+E++LQ+ +K+ ++K  KKL A KN MKVDGSGKKKKGG  F VGKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQK-EKELQDKKIKKLHANKNKMKVDGSGKKKKGG--FSVGKK 60

Query: 61 KVKTKLTAAAKAKASQAMDLD 82
          K+KTKLT  AKAKA+QAM+LD
Sbjct: 61 KLKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of MELO3C006117 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.8e-33
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKNSLSRRKKQYEFDLQR +KQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQR-EKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKK 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKASQAM+LDK
Sbjct: 61 KVKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1   MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
           MSKKNSLSRRKKQYEFDL+R +K EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+
Sbjct: 42  MSKKNSLSRRKKQYEFDLRR-EKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKR 101

Query: 61  KVKTKLTAAAKAKASQAMDLDK 83
           KVKTKLTA AKAKA+QAM+LDK
Sbjct: 102 KVKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of MELO3C006117 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKNSLSRRKKQYEFDL+R +K EKEK  KKLQ KKN MKVDGSGKKKKG GGFQVGK+
Sbjct: 1  MSKKNSLSRRKKQYEFDLRR-EKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 128.6 bits (322), Expect = 4.9e-27
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQYEFDLQR +KQEK K  +KL AKKN MKVDGSGKKKKGG GFQVGK+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQR-EKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of MELO3C006117 vs. NCBI nr
Match: gi|955328203|ref|XP_014632806.1| (PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max])

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 1  MSKKNSLSRRKKQYEFDLQRVKKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKK 60
          MSKKN+L++RKKQYEFDLQR +KQEK K  +KL AKKN MKVDGS KKKKGG GFQVGK+
Sbjct: 1  MSKKNNLAKRKKQYEFDLQR-EKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKR 60

Query: 61 KVKTKLTAAAKAKASQAMDLDK 83
          KVKTKLTA AKAKA+QAM+LDK
Sbjct: 61 KVKTKLTALAKAKAAQAMELDK 81

The following BLAST results are available for this feature:

BLAST of MELO3C006117 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	5.5e-33	93.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	1.4e-28	84.15	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
I1JK99_SOYBN	3.4e-27	80.49	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
A0A0B2QZ50_GLYSO	2.2e-26	79.27	Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1	[more]
I1KIC3_SOYBN	2.2e-26	79.27	Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1	[more]

BLAST of MELO3C006117 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	1.6e-23	67.90	unknown protein	[more]

BLAST of MELO3C006117 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	7.8e-33	93.90	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	2.0e-28	84.15	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	2.0e-28	84.15	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	4.9e-27	80.49	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|955328203\|ref\|XP_014632806.1\|	3.2e-26	79.27	PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50962	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006117T1	MELO3C006117T1	mRNA
MELO3C006117T2	MELO3C006117T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50962	MU50962	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006117	CsaV3_3G008990	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006117	Silver-seed gourd	carmeB0389
MELO3C006117	Silver-seed gourd	carmeB0497
MELO3C006117	Watermelon (97103) v2	mewmbB434
MELO3C006117	Wax gourd	mewgoB533
MELO3C006117	Melon (DHL92) v3.5.1	memeB150
MELO3C006117	Cucumber (Gy14) v1	cgymeB439
MELO3C006117	Cucurbita maxima (Rimu)	cmameB242
MELO3C006117	Cucurbita maxima (Rimu)	cmameB763
MELO3C006117	Cucurbita maxima (Rimu)	cmameB769
MELO3C006117	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006117	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006117	Cucurbita moschata (Rifu)	cmomeB759
MELO3C006117	Wild cucumber (PI 183967)	cpimeB230
MELO3C006117	Cucumber (Chinese Long) v2	cumeB236
MELO3C006117	Watermelon (Charleston Gray)	mewcgB427
MELO3C006117	Watermelon (Charleston Gray)	mewcgB430
MELO3C006117	Watermelon (97103) v1	mewmB461
MELO3C006117	Watermelon (97103) v1	mewmB466
MELO3C006117	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006117	Cucurbita pepo (Zucchini)	cpemeB809
MELO3C006117	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006117	Cucumber (Gy14) v2	cgybmeB200