MELO3C005931 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005931
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Dicer-like protein 1
Location	chr6 : 47442 .. 49210 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAACCGCGACCGGGTGGCGTCTGGGTGCTCGGGAGCTTACTTTGGGATATAGCAGCAGGAGCTCGGGAGAGAGTAAGGAAGCAGGGGAAGTTGCAGAAGCAAAATCTGAGGGACAGAGACATGAGAGAGAGGGGGGAAGACGAAAGTGCGTGGGGTCAAATTCAAACAAGTATTTAACAGAGGCAGAATAAGGCGTTTGATAGCCCGTGGAATCTCAAAGAATCACGCTCAAAGTTTATGGGTTTTTAGGGTTTCTCTACCCCTACTTCCAACCCCAAAAATCCTTTCTTTTTGCGTGCTTCGTACGGTCTATCACTCTCCTAAATTTCTGCAACTTATTCTCCTTCTCTCTCTCGCTCTCTCTGCGTCTCTCTCTCTATCTCTCCGCTCCCCAGCTTCCGCTCTCTCTGCGTCAACCATTCACCGCCGAGCATTTTTCTATATTTATTTACTTTTCTATCTTTTTGTAGAGATTTTGTCTTCAATTCGATTTTCTTTTATGCCTTTTACATTTTTTGATTAAAGTTCCAGAAACTGAAATTTCATAGTTCCTTTTCGTTTTTAATTTATCTGTTATACTAGTCTGCTATGGAGGATGAGACTAGGGTTCCGGGAAGTTTTAGCAGCGAACCAACATGTTCATTGGGGGTTTCTTCTTTCTGGCTTGATGCCTGTGAGGACATCTCCTGCGACATCATCAATGATTTTGTGGATTTCCAGGCGTCTATAACCCCTGGATCCTCAGTTGATCACACTTCCGATCAACATAACCTGTCCAACGATTTTTTTGGTGGAATTGATCACATTCTTGACAGTATCAAGAACGGGGGAAGCCTCTCCCCAGTAACTTGTAATGTTGATCGTGATTGCAACGTGAGGGAAGGGTTGTTTATTGAGAATAATGCATCTGGGGTTCGTGATATGTCGGTCGATAGCTCAACTGTGCAATCCAATGGTGTACAGATAGAAATTCTTCAATGCAGTGGACCGAGCAAGGATAATCTTGATAATGGTAGTCATATCTGCGAGCGCTATGAATCTGTTAATGGGTCCCAGCCACCATATGAATGCGAAGGGCTCAGAGTTGTTGAAACCTCTAAGAGAAATGGAGTTCAAAAACACGAGGGGAGTAATGACGCGTCGTTGCGAGATTGGGGTTGTGATAATGAGGAGAAAAGCAATAAGAGACCTCGTATTAGCAATGGCAACAATGAGAGGCATTATTCAAACAGGGGACAGTGTCCATCTAGGGATAGAGAAAAGTTCCACACCAGGAAGAGGTTGCGTGACCGAGATGAGATCGATAGAAGAGAAAGGAGTTATTTTAGGAGGAGAGAGCATTATGGTACAGGTGGAAAGGATGCAAGAGATAGGGATTTGAGGGAGCGGGAACAAAAGGGATATTGGGAGAGAGACAAATCAGGGTCAAATGATATGGTTTTTCACTCAGGGATGTGGGAAGCTGATCGCAACAGAGAAGCAATGACTGATAATGAAAAAAACCGTGAATTCCAGGGAACTGCAGACAAAAGTTCCAAGGAGATTAAAGAAAAAATCCCTGAGGAGCAAGCTCGGCAATATCAGTTGGATGTTCTTGAACAAGCGAAGAAGAAAAATACCATAGCTTTTCTCGAAACTGGGGCTGGGAAGACACTTATTGCTGTTCTTCTCATTAAAAGTATTTACAATGATTTACAAACTCAAAACAAGAAGATGCTCGCTGTTTTTTTAGTTCCCAAAGTTCCACTTGTCTATCAGGTAAAATAA

mRNA sequence

GAAAACCGCGACCGGGTGGCGTCTGGGTGCTCGGGAGCTTACTTTGGGATATAGCAGCAGGAGCTCGGGAGAGAGTAAGGAAGCAGGGGAAGTTGCAGAAGCAAAATCTGAGGGACAGAGACATGAGAGAGAGGGGGGAAGACGAAAGTGCGTGGGGTCAAATTCAAACAAGTATTTAACAGAGGCAGAATAAGGCGTTTGATAGCCCGTGGAATCTCAAAGAATCACGCTCAAAGTTTATGGGTTTTTAGGGTTTCTCTACCCCTACTTCCAACCCCAAAAATCCTTTCTTTTTGCGTGCTTCGTACGGTCTATCACTCTCCTAAATTTCTGCAACTTATTCTCCTTCTCTCTCTCGCTCTCTCTGCGTCTCTCTCTCTATCTCTCCGCTCCCCAGCTTCCGCTCTCTCTGCGTCAACCATTCACCGCCGAGCATTTTTCTATATTTATTTACTTTTCTATCTTTTTGTAGAGATTTTGTCTTCAATTCGATTTTCTTTTATGCCTTTTACATTTTTTGATTAAAGTTCCAGAAACTGAAATTTCATAGTTCCTTTTCGTTTTTAATTTATCTGTTATACTAGTCTGCTATGGAGGATGAGACTAGGGTTCCGGGAAGTTTTAGCAGCGAACCAACATGTTCATTGGGGGTTTCTTCTTTCTGGCTTGATGCCTGTGAGGACATCTCCTGCGACATCATCAATGATTTTGTGGATTTCCAGGCGTCTATAACCCCTGGATCCTCAGTTGATCACACTTCCGATCAACATAACCTGTCCAACGATTTTTTTGGTGGAATTGATCACATTCTTGACAGTATCAAGAACGGGGGAAGCCTCTCCCCAGTAACTTGTAATGTTGATCGTGATTGCAACGTGAGGGAAGGGTTGTTTATTGAGAATAATGCATCTGGGGTTCGTGATATGTCGGTCGATAGCTCAACTGTGCAATCCAATGGTGTACAGATAGAAATTCTTCAATGCAGTGGACCGAGCAAGGATAATCTTGATAATGGTAGTCATATCTGCGAGCGCTATGAATCTGTTAATGGGTCCCAGCCACCATATGAATGCGAAGGGCTCAGAGTTGTTGAAACCTCTAAGAGAAATGGAGTTCAAAAACACGAGGGGAGTAATGACGCGTCGTTGCGAGATTGGGGTTGTGATAATGAGGAGAAAAGCAATAAGAGACCTCGTATTAGCAATGGCAACAATGAGAGGCATTATTCAAACAGGGGACAGTGTCCATCTAGGGATAGAGAAAAGTTCCACACCAGGAAGAGGTTGCGTGACCGAGATGAGATCGATAGAAGAGAAAGGAGTTATTTTAGGAGGAGAGAGCATTATGGTACAGGTGGAAAGGATGCAAGAGATAGGGATTTGAGGGAGCGGGAACAAAAGGGATATTGGGAGAGAGACAAATCAGGGTCAAATGATATGGTTTTTCACTCAGGGATGTGGGAAGCTGATCGCAACAGAGAAGCAATGACTGATAATGAAAAAAACCGTGAATTCCAGGGAACTGCAGACAAAAGTTCCAAGGAGATTAAAGAAAAAATCCCTGAGGAGCAAGCTCGGCAATATCAGTTGGATGTTCTTGAACAAGCGAAGAAGAAAAATACCATAGCTTTTCTCGAAACTGGGGCTGGGAAGACACTTATTGCTGTTCTTCTCATTAAAAGTATTTACAATGATTTACAAACTCAAAACAAGAAGATGCTCGCTGTTTTTTTAGTTCCCAAAGTTCCACTTGTCTATCAGGTAAAATAA

Coding sequence (CDS)

ATGGAGGATGAGACTAGGGTTCCGGGAAGTTTTAGCAGCGAACCAACATGTTCATTGGGGGTTTCTTCTTTCTGGCTTGATGCCTGTGAGGACATCTCCTGCGACATCATCAATGATTTTGTGGATTTCCAGGCGTCTATAACCCCTGGATCCTCAGTTGATCACACTTCCGATCAACATAACCTGTCCAACGATTTTTTTGGTGGAATTGATCACATTCTTGACAGTATCAAGAACGGGGGAAGCCTCTCCCCAGTAACTTGTAATGTTGATCGTGATTGCAACGTGAGGGAAGGGTTGTTTATTGAGAATAATGCATCTGGGGTTCGTGATATGTCGGTCGATAGCTCAACTGTGCAATCCAATGGTGTACAGATAGAAATTCTTCAATGCAGTGGACCGAGCAAGGATAATCTTGATAATGGTAGTCATATCTGCGAGCGCTATGAATCTGTTAATGGGTCCCAGCCACCATATGAATGCGAAGGGCTCAGAGTTGTTGAAACCTCTAAGAGAAATGGAGTTCAAAAACACGAGGGGAGTAATGACGCGTCGTTGCGAGATTGGGGTTGTGATAATGAGGAGAAAAGCAATAAGAGACCTCGTATTAGCAATGGCAACAATGAGAGGCATTATTCAAACAGGGGACAGTGTCCATCTAGGGATAGAGAAAAGTTCCACACCAGGAAGAGGTTGCGTGACCGAGATGAGATCGATAGAAGAGAAAGGAGTTATTTTAGGAGGAGAGAGCATTATGGTACAGGTGGAAAGGATGCAAGAGATAGGGATTTGAGGGAGCGGGAACAAAAGGGATATTGGGAGAGAGACAAATCAGGGTCAAATGATATGGTTTTTCACTCAGGGATGTGGGAAGCTGATCGCAACAGAGAAGCAATGACTGATAATGAAAAAAACCGTGAATTCCAGGGAACTGCAGACAAAAGTTCCAAGGAGATTAAAGAAAAAATCCCTGAGGAGCAAGCTCGGCAATATCAGTTGGATGTTCTTGAACAAGCGAAGAAGAAAAATACCATAGCTTTTCTCGAAACTGGGGCTGGGAAGACACTTATTGCTGTTCTTCTCATTAAAAGTATTTACAATGATTTACAAACTCAAAACAAGAAGATGCTCGCTGTTTTTTTAGTTCCCAAAGTTCCACTTGTCTATCAGGTAAAATAA

Protein sequence

MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHNLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQVK*

Homology

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BLAST of MELO3C005931 vs. Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-51
Identity = 136/307 (44.30%), Postives = 181/307 (58.96%), Query Frame = 1


Query: 91  DRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQCSGPSKDNLDNGSHICERYE 150
           D  C++ + L  E + S V   +V+ ST   NGV  +         D++ NG  +     
Sbjct: 23  DISCDLIDDLVSEFDPSSV---AVNEST-DENGVINDFFGGIDHILDSIKNGGGLPNNGV 82

Query: 151 SVNGSQPPYECEGLRVV--ETSKRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNN 210
           S   SQ        +V+  ET K NG+QK+ G  D   ++ G    +K  KR R+ +  +
Sbjct: 83  SDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEG----DKDRKRARVCSYQS 142

Query: 211 ER-HYSNRGQCP-SRDREKFHTRKRLRDRDEIDRRERSYFRRREHYGTGGKDARDRDLRE 270
           ER + S RG    SR+ ++F  RKR R+ DE    ++   R   +Y         RD R+
Sbjct: 143 ERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKK--RECNNYR--------RDGRD 202

Query: 271 REQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQGTADKSS---KEIKEKI 330
           RE +GYWERDK GSN++V+ SG WEAD  R+    +  NRE    A+++    +E KEK+
Sbjct: 203 REVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKV 262

Query: 331 PEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVP 390
            EEQAR+YQLDVLEQAK KNTIAFLETGAGKTLIA+LLIKS++ DL +QN+KML+VFLVP
Sbjct: 263 VEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVP 311

HSP 2 Score: 166.4 bits (420), Expect = 6.3e-40
Identity = 135/371 (36.39%), Postives = 177/371 (47.71%), Query Frame = 1


Query: 23  SFWLDACEDISCDIINDFVDFQASITPGS-SVDHTSDQHNLSNDFFGGIDHILDSIKNGG 82
           S+WLDACEDISCD+I+D V   +   P S +V+ ++D++ + NDFFGGIDHILDSIKNGG
Sbjct: 15  SYWLDACEDISCDLIDDLV---SEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGG 74

Query: 83  SLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQCSGPSKDNL-- 142
            L     N   D N       + N   V    +   TV+ NG     LQ +G  +D    
Sbjct: 75  GLPN---NGVSDTN------SQINEVTVTPQVIAKETVKENG-----LQKNGGKRDEFSK 134

Query: 143 DNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGCDNEEKSNK 202
           + G    +R    +         G   V  S+    +     N    R+W   +E  +NK
Sbjct: 135 EEGDKDRKRARVCSYQSERSNLSGRGHVNNSR----EGDRFMNRKRTRNW---DEAGNNK 194

Query: 203 RPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREHYGTGGKDA 262
           + R  N     +Y   G    RDRE     +   +RD++   E  Y              
Sbjct: 195 KKRECN-----NYRRDG----RDREV----RGYWERDKVGSNELVY-------------- 254

Query: 263 RDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQGTADKSSKEI 322
                    + G WE D       V   G  E D   E      + R+ +   +++ +  
Sbjct: 255 ---------RSGTWEADHERDVKKV-SGGNRECDVKAEENKSKPEERKEKVVEEQARR-- 311

Query: 323 KEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAV 382
                      YQLDVLEQAK KNTIAFLETGAGKTLIA+LLIKS++ DL +QN+KML+V
Sbjct: 315 -----------YQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSV 311

Query: 383 FLVPKVPLVYQ 391
           FLVPKVPLVYQ
Sbjct: 375 FLVPKVPLVYQ 311

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BLAST of MELO3C005931 vs. Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-36
Identity = 95/209 (45.45%), Postives = 122/209 (58.37%), Query Frame = 1


Query: 190 GCDNEEKSNKRPRISNGN---NERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYF 249
           G   E +  KRPR+++G      + +  R   P      +  R+  RD D +        
Sbjct: 145 GGGGEWRDGKRPRLASGGVGGPRQEWRRRPMLPPPPSRGWDDRRGRRDFDRV-------- 204

Query: 250 RRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAM---TDNE 309
           R+ EH+              RE +G+WERD+ G   MVF SG WE + +REA    T + 
Sbjct: 205 RKHEHH-------------RREARGFWERDRGGK--MVFRSGTWEQESDREAKRARTQDG 264

Query: 310 KNREFQGTADKSSKEIKEK-IPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLI 369
            + E +  AD+     +EK + EE+ARQYQL+VLEQAK +NTIAFLETGAGKTLIAVLLI
Sbjct: 265 GSMEKKAEADRMGAAQREKPVAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLI 324

Query: 370 KSIYNDLQTQNKKMLAVFLVPKVPLVYQV 392
           KS+ + +  +NKKMLAVFLVPKVPLVYQV
Sbjct: 325 KSVCDKMLKENKKMLAVFLVPKVPLVYQV 330

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BLAST of MELO3C005931 vs. Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-11
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 324 PEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVP 383
           P+  AR YQL+ LE+A + NT+AFLETG+GKTLIAV+L+++  + ++  + +  AVFLVP
Sbjct: 30  PKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVP 89

Query: 384 KVPLVYQ 391
            V LV Q
Sbjct: 90  TVVLVGQ 96

[Close]

BLAST of MELO3C005931 vs. Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-11
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 324 PEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVP 383
           P+  AR YQL+ LE+A + NT+AFLETG+GKTLIAV+L+++  + ++  + +  AVFLVP
Sbjct: 30  PKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVP 89

Query: 384 KVPLVYQ 391
            V LV Q
Sbjct: 90  TVVLVGQ 96

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BLAST of MELO3C005931 vs. Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.9e-10
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 320 KEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAV 379
           K +  +   R+YQLDV E A ++NTIA L+TGAGKT+IAV+LIK      +T+N   + +
Sbjct: 24  KRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVII 83

Query: 380 FLVPKVPLVYQ 391
           FL P V LV Q
Sbjct: 84  FLAPTVQLVTQ 94

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BLAST of MELO3C005931 vs. TrEMBL
Match: A0A0A0L3I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116650 PE=4 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 8.4e-209
Identity = 361/390 (92.56%), Postives = 369/390 (94.62%), Query Frame = 1


Query: 1   MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQH 60
           MEDETRVPGSFSSEP CSLGVSSFWLDACEDI CDI NDFVDFQASITPGSSVDHTSDQ 
Sbjct: 1   MEDETRVPGSFSSEPACSLGVSSFWLDACEDIPCDI-NDFVDFQASITPGSSVDHTSDQQ 60

Query: 61  NLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQ 120
           NLSNDFFGGIDH LDSIKNGGSLSPVTCN DRDC VREG FIEN+ASGVRDM VDSSTVQ
Sbjct: 61  NLSNDFFGGIDHFLDSIKNGGSLSPVTCNGDRDCTVREGFFIENDASGVRDMPVDSSTVQ 120

Query: 121 SNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEG 180
           SNG QIEILQC+G SKDNLDNGSHICERYESVNG Q P  CEGLRVVET KRNGV+KHE 
Sbjct: 121 SNGAQIEILQCNGLSKDNLDNGSHICERYESVNGFQSPNGCEGLRVVETPKRNGVKKHER 180

Query: 181 SNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDR 240
           +ND SLR WGCDNEE+SNKRPRISNGNNER+YSNRGQC SRDREKFHTRKRLRDRDEIDR
Sbjct: 181 TNDTSLRGWGCDNEERSNKRPRISNGNNERYYSNRGQCLSRDREKFHTRKRLRDRDEIDR 240

Query: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMT 300
           RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNR+AMT
Sbjct: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNRDAMT 300

Query: 301 DNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360
           DN+KN EFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL
Sbjct: 301 DNDKNLEFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360

Query: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ
Sbjct: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 389

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BLAST of MELO3C005931 vs. TrEMBL
Match: A0A067K9A8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14170 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 3.0e-97
Identity = 214/408 (52.45%), Postives = 268/408 (65.69%), Query Frame = 1


Query: 2   EDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHN 61
           + ETRV G+ +       G  S+WLDACEDISCD+I++FVDF  SI  GS +D TS+Q N
Sbjct: 3   DGETRVSGTLAG------GGPSYWLDACEDISCDLIDNFVDFDTSIVQGS-IDDTSNQDN 62

Query: 62  LSNDFFGGIDHILDSIKNGGSLS--------------PVTCNVDRDCNVREGLFIENNAS 121
           L NDFFGGIDHILDSIKNG  L                +  N  +DCNV +G F +N  +
Sbjct: 63  LVNDFFGGIDHILDSIKNGSGLPLIADSNNTSSNGTPAIVGNGIQDCNVGDGWF-KNETA 122

Query: 122 GVRDMSVDSSTVQSNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVV 181
                + +++ +QSNG      + +G   +N  NG +  +R             E L  +
Sbjct: 123 AFCTSTNENTPLQSNGNGKINFESNG-QVENFSNGLNSLDRRVE----------ESLNSL 182

Query: 182 ETS-KRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNNER--HYSNRGQCPSRDRE 241
            +S K NG   ++GS +  LR+ G D EE+  KR RI++  N+R   YS+RGQ   RDR+
Sbjct: 183 NSSIKENG---NKGSVEG-LRERGFDGEERCCKRARITSYKNDRDRQYSSRGQYDPRDRD 242

Query: 242 KFHTRKRLRDRDEIDRRERS--YFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSND 301
           +   RKRLRD D+IDRR+R   + RR  + G   +D RDRD ++REQ+GYWERD+SGSN+
Sbjct: 243 RSSNRKRLRDWDDIDRRDRDRDHPRRNRYNGGSRRDGRDRDWKDREQRGYWERDRSGSNE 302

Query: 302 MVFHSGMWEADRNREAMTDNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKK 361
           MVF  G WEADRN+E    N+K+ E  G  +K S+E KEK+PEEQARQYQLDVLEQAKKK
Sbjct: 303 MVFRIGTWEADRNKEGKETNDKDHECNGKQEKKSEESKEKLPEEQARQYQLDVLEQAKKK 362

Query: 362 NTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           NTIAFLETGAGKTLIAVLLIKS+ NDLQ QNKKMLAVFLVPKVPLVYQ
Sbjct: 363 NTIAFLETGAGKTLIAVLLIKSLCNDLQRQNKKMLAVFLVPKVPLVYQ 387

[Close]

BLAST of MELO3C005931 vs. TrEMBL
Match: U5GLQ5_POPTR (Endoribonuclease Dicer family protein OS=Populus trichocarpa GN=POPTR_0002s18240g PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.1e-96
Identity = 213/380 (56.05%), Postives = 248/380 (65.26%), Query Frame = 1


Query: 20  GVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHNLSNDFFGGIDHILDSIKN 79
           G  S+WLDACEDISCDII+DFVDF  SI P  SVD+ S   N++NDFFGGIDHILDSIKN
Sbjct: 16  GGPSYWLDACEDISCDIIDDFVDFDTSIVPELSVDNNS---NVNNDFFGGIDHILDSIKN 75

Query: 80  GGSLSPV-----TCNV---DRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQC 139
           G  L P+     T NV   +RDC V +G FI N  +GV      SS  QSNG        
Sbjct: 76  GSGLPPLHNASTTANVSNGNRDCIVGDGWFI-NVENGVCH---GSSVSQSNG-------- 135

Query: 140 SGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGC 199
               KDN+D    +       NG        G R  E    N   K  G  D    + G 
Sbjct: 136 --GDKDNIDRKGQV------ENGGNGLNLSNGKR--EERFSNNFVKENGKKDEQSTEQGI 195

Query: 200 DNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREH 259
           D +E+  KR R+    NER YS+RG+   RDRE+  +RKR RD DE DRR+R   RRR+ 
Sbjct: 196 DGDERCGKRARLCCYRNERVYSSRGE--HRDRERCSSRKRSRDWDESDRRDRDISRRRDR 255

Query: 260 Y-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQG 319
           Y G+  +D RDRD RERE +GYWERD+SGS DMVF  G WEAD N+E    N+K +E +G
Sbjct: 256 YSGSNRRDGRDRDWRERELRGYWERDRSGSKDMVFRLGTWEADHNKEGREANDKIQECKG 315

Query: 320 TADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQ 379
             +K S+E KEK+PEEQARQYQLDVL+QAKKKNTIAFLETGAGKTLIAVLLI+SI NDLQ
Sbjct: 316 ELEKKSEESKEKVPEEQARQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQ 368

Query: 380 TQNKKMLAVFLVPKVPLVYQ 391
            QNKK+LAVFLVPKVPLVYQ
Sbjct: 376 RQNKKILAVFLVPKVPLVYQ 368

[Close]

BLAST of MELO3C005931 vs. TrEMBL
Match: A0A061DZU3_THECC (Dicer-like 1 isoform 1 OS=Theobroma cacao GN=TCM_005016 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.9e-96
Identity = 207/380 (54.47%), Postives = 251/380 (66.05%), Query Frame = 1


Query: 22  SSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHNLSNDFFGGIDHILDSIKNGG 81
           SS+WLDACEDISCD+INDFVDF A I    SVD+ S+Q     DFFGGIDHILDSIKNGG
Sbjct: 61  SSYWLDACEDISCDLINDFVDFDAPIVQ-ESVDNASNQ-----DFFGGIDHILDSIKNGG 120

Query: 82  SLSPVTCNVD----------RDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQC 141
            L PV  N +          +D  V +G F +N  SGV     ++S    NGV+   L+ 
Sbjct: 121 GLPPVGNNNNNSSVVNGDGIQDSIVGDGWF-QNEPSGVSKNLAENSVPPPNGVEKNNLES 180

Query: 142 SGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGC 201
            G  K N +N +     Y                   +SK NGV + + S+  S RD G 
Sbjct: 181 KGQEK-NCENSNWNLFDY-------------------SSKENGVHREDKSSCES-RDRGL 240

Query: 202 DNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREH 261
           D+EEK  KR R++   N+R Y +RGQ   RDRE+   RKR+RD DE DRR+R + RRREH
Sbjct: 241 DSEEKCGKRARVNGSKNDRQYPSRGQYYPRDRERCSARKRVRDWDEFDRRDREHVRRREH 300

Query: 262 Y-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQG 321
           Y G+  +D RDR+ R+RE +GYWERD+SGSN++VF  G WEADR RE    N+K++E  G
Sbjct: 301 YNGSSRRDGRDRERRDREPRGYWERDRSGSNEVVFRLGTWEADRYREGKAANDKSQECNG 360

Query: 322 TADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQ 381
             +K  ++ KEK+ EEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSI +DLQ
Sbjct: 361 KIEKKVEQPKEKLLEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSICDDLQ 412

Query: 382 TQNKKMLAVFLVPKVPLVYQ 391
            Q KKML+VFLVPKVPLVYQ
Sbjct: 421 KQKKKMLSVFLVPKVPLVYQ 412

[Close]

BLAST of MELO3C005931 vs. TrEMBL
Match: W9S6M5_9ROSA (Endoribonuclease Dicer-1-like protein OS=Morus notabilis GN=L484_019609 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 5.5e-91
Identity = 204/400 (51.00%), Postives = 249/400 (62.25%), Query Frame = 1


Query: 1   MEDETRVPGSFSSE--PTCSLGVSSFWLDACEDISCDIINDFVDF-QASITPGS------ 60
           M+ E++V G   S   P       S+WLDACEDISCD+I + VDF  AS+ P S      
Sbjct: 1   MDGESKVQGDPISARTPATEEVRPSYWLDACEDISCDLIGELVDFGDASVLPDSLGGDRH 60

Query: 61  SVDHTSDQHNLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRD 120
             +   ++  L  DFFGGIDHILDS KNG  L P+    + +     G F  N AS    
Sbjct: 61  GSNCNQEEDGLVGDFFGGIDHILDSFKNGDGLPPLPPEFNGNGCSLGGSFYVNGASEEM- 120

Query: 121 MSVDSSTVQSNGVQIEILQCSGPSKDNLDNGS-HICERYESVNGSQPPYECEGLRVVETS 180
           M VDSS+ QSNG            +++L NG      +  + +G + P  C        +
Sbjct: 121 MRVDSSSSQSNGT----------FQNSLQNGDVRHASKPANGSGERSPAPCR------EN 180

Query: 181 KRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRK 240
             NGV+K E  +D            +S+K  R  NG +ERH S RGQ     RE+   RK
Sbjct: 181 GENGVRKLENGDD------------RSSKTARFGNGKSERHGSGRGQY--HGRERCAGRK 240

Query: 241 RLRDRDEIDRRERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMW 300
           R RD DEI+RR+R Y RR+EHY +  +D R+RDLR+R  KGYWERDKSGSN+MVF  G +
Sbjct: 241 RARDWDEIERRDRDYVRRKEHYSSNRRDGRERDLRDRGPKGYWERDKSGSNEMVFRIGAY 300

Query: 301 EADRNREAMTDNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLET 360
           EADRNREA   N++N E  G  +  S+EIKEK+PEEQARQYQLDVLE+AKKKNTIAFLET
Sbjct: 301 EADRNREAKPGNDRNEECNGKEENKSEEIKEKLPEEQARQYQLDVLEEAKKKNTIAFLET 360

Query: 361 GAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           GAGKTLIAVLLIKS+ NDLQ QN+KMLAVFLVPKVPLVYQ
Sbjct: 361 GAGKTLIAVLLIKSLSNDLQMQNRKMLAVFLVPKVPLVYQ 369

[Close]

BLAST of MELO3C005931 vs. TAIR10
Match: AT1G01040.2 (AT1G01040.2 dicer-like 1)

HSP 1 Score: 205.3 bits (521), Expect = 6.9e-53
Identity = 136/307 (44.30%), Postives = 181/307 (58.96%), Query Frame = 1


Query: 91  DRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQCSGPSKDNLDNGSHICERYE 150
           D  C++ + L  E + S V   +V+ ST   NGV  +         D++ NG  +     
Sbjct: 23  DISCDLIDDLVSEFDPSSV---AVNEST-DENGVINDFFGGIDHILDSIKNGGGLPNNGV 82

Query: 151 SVNGSQPPYECEGLRVV--ETSKRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNN 210
           S   SQ        +V+  ET K NG+QK+ G  D   ++ G    +K  KR R+ +  +
Sbjct: 83  SDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEG----DKDRKRARVCSYQS 142

Query: 211 ER-HYSNRGQCP-SRDREKFHTRKRLRDRDEIDRRERSYFRRREHYGTGGKDARDRDLRE 270
           ER + S RG    SR+ ++F  RKR R+ DE    ++   R   +Y         RD R+
Sbjct: 143 ERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKK--RECNNYR--------RDGRD 202

Query: 271 REQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQGTADKSS---KEIKEKI 330
           RE +GYWERDK GSN++V+ SG WEAD  R+    +  NRE    A+++    +E KEK+
Sbjct: 203 REVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKV 262

Query: 331 PEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVP 390
            EEQAR+YQLDVLEQAK KNTIAFLETGAGKTLIA+LLIKS++ DL +QN+KML+VFLVP
Sbjct: 263 VEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVP 311

HSP 2 Score: 166.4 bits (420), Expect = 3.6e-41
Identity = 135/371 (36.39%), Postives = 177/371 (47.71%), Query Frame = 1


Query: 23  SFWLDACEDISCDIINDFVDFQASITPGS-SVDHTSDQHNLSNDFFGGIDHILDSIKNGG 82
           S+WLDACEDISCD+I+D V   +   P S +V+ ++D++ + NDFFGGIDHILDSIKNGG
Sbjct: 15  SYWLDACEDISCDLIDDLV---SEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGG 74

Query: 83  SLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQCSGPSKDNL-- 142
            L     N   D N       + N   V    +   TV+ NG     LQ +G  +D    
Sbjct: 75  GLPN---NGVSDTN------SQINEVTVTPQVIAKETVKENG-----LQKNGGKRDEFSK 134

Query: 143 DNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGCDNEEKSNK 202
           + G    +R    +         G   V  S+    +     N    R+W   +E  +NK
Sbjct: 135 EEGDKDRKRARVCSYQSERSNLSGRGHVNNSR----EGDRFMNRKRTRNW---DEAGNNK 194

Query: 203 RPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREHYGTGGKDA 262
           + R  N     +Y   G    RDRE     +   +RD++   E  Y              
Sbjct: 195 KKRECN-----NYRRDG----RDREV----RGYWERDKVGSNELVY-------------- 254

Query: 263 RDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQGTADKSSKEI 322
                    + G WE D       V   G  E D   E      + R+ +   +++ +  
Sbjct: 255 ---------RSGTWEADHERDVKKV-SGGNRECDVKAEENKSKPEERKEKVVEEQARR-- 311

Query: 323 KEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAV 382
                      YQLDVLEQAK KNTIAFLETGAGKTLIA+LLIKS++ DL +QN+KML+V
Sbjct: 315 -----------YQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSV 311

Query: 383 FLVPKVPLVYQ 391
           FLVPKVPLVYQ
Sbjct: 375 FLVPKVPLVYQ 311

[Close]

BLAST of MELO3C005931 vs. TAIR10
Match: AT3G03300.1 (AT3G03300.1 dicer-like 2)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-10
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 312 ADKSSKEIKEKI---PEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYND 371
           AD    E  +++   P   AR YQ++ LE+A K+NTI FLETG+GKTLIA++L++S Y  
Sbjct: 5   ADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRS-YAY 64

Query: 372 LQTQNKKMLAVFLVPKVPLVYQ 391
           L  +      VFLVP+V LV Q
Sbjct: 65  LFRKPSPCFCVFLVPQVVLVTQ 85

[Close]

BLAST of MELO3C005931 vs. TAIR10
Match: AT5G20320.1 (AT5G20320.1 dicer-like 4)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-09
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 310 GTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDL 369
           GT D S K   EK P + AR+YQ+++ ++A ++N I +L TG GKT IAV+LI  +   L
Sbjct: 108 GTDDPSPK--MEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYEL-GHL 167

Query: 370 QTQNKKMLAVFLVPKVPLVYQ 391
               KK + +FL P V LV Q
Sbjct: 168 VLSPKKSVCIFLAPTVALVEQ 185

[Close]

BLAST of MELO3C005931 vs. NCBI nr
Match: gi|659074701|ref|XP_008437750.1| (PREDICTED: endoribonuclease Dicer homolog 1 [Cucumis melo])

HSP 1 Score: 801.6 bits (2069), Expect = 6.2e-229
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 1


Query: 1   MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQH 60
           MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQH
Sbjct: 1   MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQH 60

Query: 61  NLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQ 120
           NLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQ
Sbjct: 61  NLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQ 120

Query: 121 SNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEG 180
           SNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEG
Sbjct: 121 SNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEG 180

Query: 181 SNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDR 240
           SNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDR
Sbjct: 181 SNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDR 240

Query: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMT 300
           RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMT
Sbjct: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMT 300

Query: 301 DNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360
           DNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL
Sbjct: 301 DNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360

Query: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ
Sbjct: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 390

[Close]

BLAST of MELO3C005931 vs. NCBI nr
Match: gi|778676576|ref|XP_011650612.1| (PREDICTED: endoribonuclease Dicer homolog 1 [Cucumis sativus])

HSP 1 Score: 734.2 bits (1894), Expect = 1.2e-208
Identity = 361/390 (92.56%), Postives = 369/390 (94.62%), Query Frame = 1


Query: 1   MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQH 60
           MEDETRVPGSFSSEP CSLGVSSFWLDACEDI CDI NDFVDFQASITPGSSVDHTSDQ 
Sbjct: 1   MEDETRVPGSFSSEPACSLGVSSFWLDACEDIPCDI-NDFVDFQASITPGSSVDHTSDQQ 60

Query: 61  NLSNDFFGGIDHILDSIKNGGSLSPVTCNVDRDCNVREGLFIENNASGVRDMSVDSSTVQ 120
           NLSNDFFGGIDH LDSIKNGGSLSPVTCN DRDC VREG FIEN+ASGVRDM VDSSTVQ
Sbjct: 61  NLSNDFFGGIDHFLDSIKNGGSLSPVTCNGDRDCTVREGFFIENDASGVRDMPVDSSTVQ 120

Query: 121 SNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEG 180
           SNG QIEILQC+G SKDNLDNGSHICERYESVNG Q P  CEGLRVVET KRNGV+KHE 
Sbjct: 121 SNGAQIEILQCNGLSKDNLDNGSHICERYESVNGFQSPNGCEGLRVVETPKRNGVKKHER 180

Query: 181 SNDASLRDWGCDNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDR 240
           +ND SLR WGCDNEE+SNKRPRISNGNNER+YSNRGQC SRDREKFHTRKRLRDRDEIDR
Sbjct: 181 TNDTSLRGWGCDNEERSNKRPRISNGNNERYYSNRGQCLSRDREKFHTRKRLRDRDEIDR 240

Query: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMT 300
           RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNR+AMT
Sbjct: 241 RERSYFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNRDAMT 300

Query: 301 DNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360
           DN+KN EFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL
Sbjct: 301 DNDKNLEFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL 360

Query: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ
Sbjct: 361 LIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 389

[Close]

BLAST of MELO3C005931 vs. NCBI nr
Match: gi|802694114|ref|XP_012083084.1| (PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas])

HSP 1 Score: 363.6 bits (932), Expect = 4.3e-97
Identity = 214/408 (52.45%), Postives = 268/408 (65.69%), Query Frame = 1


Query: 2   EDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHN 61
           + ETRV G+ +       G  S+WLDACEDISCD+I++FVDF  SI  GS +D TS+Q N
Sbjct: 3   DGETRVSGTLAG------GGPSYWLDACEDISCDLIDNFVDFDTSIVQGS-IDDTSNQDN 62

Query: 62  LSNDFFGGIDHILDSIKNGGSLS--------------PVTCNVDRDCNVREGLFIENNAS 121
           L NDFFGGIDHILDSIKNG  L                +  N  +DCNV +G F +N  +
Sbjct: 63  LVNDFFGGIDHILDSIKNGSGLPLIADSNNTSSNGTPAIVGNGIQDCNVGDGWF-KNETA 122

Query: 122 GVRDMSVDSSTVQSNGVQIEILQCSGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVV 181
                + +++ +QSNG      + +G   +N  NG +  +R             E L  +
Sbjct: 123 AFCTSTNENTPLQSNGNGKINFESNG-QVENFSNGLNSLDRRVE----------ESLNSL 182

Query: 182 ETS-KRNGVQKHEGSNDASLRDWGCDNEEKSNKRPRISNGNNER--HYSNRGQCPSRDRE 241
            +S K NG   ++GS +  LR+ G D EE+  KR RI++  N+R   YS+RGQ   RDR+
Sbjct: 183 NSSIKENG---NKGSVEG-LRERGFDGEERCCKRARITSYKNDRDRQYSSRGQYDPRDRD 242

Query: 242 KFHTRKRLRDRDEIDRRERS--YFRRREHYGTGGKDARDRDLREREQKGYWERDKSGSND 301
           +   RKRLRD D+IDRR+R   + RR  + G   +D RDRD ++REQ+GYWERD+SGSN+
Sbjct: 243 RSSNRKRLRDWDDIDRRDRDRDHPRRNRYNGGSRRDGRDRDWKDREQRGYWERDRSGSNE 302

Query: 302 MVFHSGMWEADRNREAMTDNEKNREFQGTADKSSKEIKEKIPEEQARQYQLDVLEQAKKK 361
           MVF  G WEADRN+E    N+K+ E  G  +K S+E KEK+PEEQARQYQLDVLEQAKKK
Sbjct: 303 MVFRIGTWEADRNKEGKETNDKDHECNGKQEKKSEESKEKLPEEQARQYQLDVLEQAKKK 362

Query: 362 NTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLVYQ 391
           NTIAFLETGAGKTLIAVLLIKS+ NDLQ QNKKMLAVFLVPKVPLVYQ
Sbjct: 363 NTIAFLETGAGKTLIAVLLIKSLCNDLQRQNKKMLAVFLVPKVPLVYQ 387

[Close]

BLAST of MELO3C005931 vs. NCBI nr
Match: gi|566158690|ref|XP_006386668.1| (Endoribonuclease Dicer family protein [Populus trichocarpa])

HSP 1 Score: 361.7 bits (927), Expect = 1.6e-96
Identity = 213/380 (56.05%), Postives = 248/380 (65.26%), Query Frame = 1


Query: 20  GVSSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHNLSNDFFGGIDHILDSIKN 79
           G  S+WLDACEDISCDII+DFVDF  SI P  SVD+ S   N++NDFFGGIDHILDSIKN
Sbjct: 16  GGPSYWLDACEDISCDIIDDFVDFDTSIVPELSVDNNS---NVNNDFFGGIDHILDSIKN 75

Query: 80  GGSLSPV-----TCNV---DRDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQC 139
           G  L P+     T NV   +RDC V +G FI N  +GV      SS  QSNG        
Sbjct: 76  GSGLPPLHNASTTANVSNGNRDCIVGDGWFI-NVENGVCH---GSSVSQSNG-------- 135

Query: 140 SGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGC 199
               KDN+D    +       NG        G R  E    N   K  G  D    + G 
Sbjct: 136 --GDKDNIDRKGQV------ENGGNGLNLSNGKR--EERFSNNFVKENGKKDEQSTEQGI 195

Query: 200 DNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREH 259
           D +E+  KR R+    NER YS+RG+   RDRE+  +RKR RD DE DRR+R   RRR+ 
Sbjct: 196 DGDERCGKRARLCCYRNERVYSSRGE--HRDRERCSSRKRSRDWDESDRRDRDISRRRDR 255

Query: 260 Y-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQG 319
           Y G+  +D RDRD RERE +GYWERD+SGS DMVF  G WEAD N+E    N+K +E +G
Sbjct: 256 YSGSNRRDGRDRDWRERELRGYWERDRSGSKDMVFRLGTWEADHNKEGREANDKIQECKG 315

Query: 320 TADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQ 379
             +K S+E KEK+PEEQARQYQLDVL+QAKKKNTIAFLETGAGKTLIAVLLI+SI NDLQ
Sbjct: 316 ELEKKSEESKEKVPEEQARQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQ 368

Query: 380 TQNKKMLAVFLVPKVPLVYQ 391
            QNKK+LAVFLVPKVPLVYQ
Sbjct: 376 RQNKKILAVFLVPKVPLVYQ 368

[Close]

BLAST of MELO3C005931 vs. NCBI nr
Match: gi|590720643|ref|XP_007051386.1| (Dicer-like 1 isoform 1 [Theobroma cacao])

HSP 1 Score: 360.9 bits (925), Expect = 2.8e-96
Identity = 207/380 (54.47%), Postives = 251/380 (66.05%), Query Frame = 1


Query: 22  SSFWLDACEDISCDIINDFVDFQASITPGSSVDHTSDQHNLSNDFFGGIDHILDSIKNGG 81
           SS+WLDACEDISCD+INDFVDF A I    SVD+ S+Q     DFFGGIDHILDSIKNGG
Sbjct: 61  SSYWLDACEDISCDLINDFVDFDAPIVQ-ESVDNASNQ-----DFFGGIDHILDSIKNGG 120

Query: 82  SLSPVTCNVD----------RDCNVREGLFIENNASGVRDMSVDSSTVQSNGVQIEILQC 141
            L PV  N +          +D  V +G F +N  SGV     ++S    NGV+   L+ 
Sbjct: 121 GLPPVGNNNNNSSVVNGDGIQDSIVGDGWF-QNEPSGVSKNLAENSVPPPNGVEKNNLES 180

Query: 142 SGPSKDNLDNGSHICERYESVNGSQPPYECEGLRVVETSKRNGVQKHEGSNDASLRDWGC 201
            G  K N +N +     Y                   +SK NGV + + S+  S RD G 
Sbjct: 181 KGQEK-NCENSNWNLFDY-------------------SSKENGVHREDKSSCES-RDRGL 240

Query: 202 DNEEKSNKRPRISNGNNERHYSNRGQCPSRDREKFHTRKRLRDRDEIDRRERSYFRRREH 261
           D+EEK  KR R++   N+R Y +RGQ   RDRE+   RKR+RD DE DRR+R + RRREH
Sbjct: 241 DSEEKCGKRARVNGSKNDRQYPSRGQYYPRDRERCSARKRVRDWDEFDRRDREHVRRREH 300

Query: 262 Y-GTGGKDARDRDLREREQKGYWERDKSGSNDMVFHSGMWEADRNREAMTDNEKNREFQG 321
           Y G+  +D RDR+ R+RE +GYWERD+SGSN++VF  G WEADR RE    N+K++E  G
Sbjct: 301 YNGSSRRDGRDRERRDREPRGYWERDRSGSNEVVFRLGTWEADRYREGKAANDKSQECNG 360

Query: 322 TADKSSKEIKEKIPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQ 381
             +K  ++ KEK+ EEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSI +DLQ
Sbjct: 361 KIEKKVEQPKEKLLEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSICDDLQ 412

Query: 382 TQNKKMLAVFLVPKVPLVYQ 391
            Q KKML+VFLVPKVPLVYQ
Sbjct: 421 KQKKKMLSVFLVPKVPLVYQ 412

The following BLAST results are available for this feature:

BLAST of MELO3C005931 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCL1_ARATH	1.2e-51	44.30	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2	[more]
DCL1_ORYSJ	3.2e-36	45.45	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV...	[more]
DCL2B_ORYSJ	8.0e-11	52.24	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 ...	[more]
DCL2A_ORYSJ	8.0e-11	52.24	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 ...	[more]
DCL3A_ORYSJ	8.9e-10	49.30	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 ...	[more]

BLAST of MELO3C005931 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I6_CUCSA	8.4e-209	92.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116650 PE=4 SV=1	[more]
A0A067K9A8_JATCU	3.0e-97	52.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14170 PE=4 SV=1	[more]
U5GLQ5_POPTR	1.1e-96	56.05	Endoribonuclease Dicer family protein OS=Populus trichocarpa GN=POPTR_0002s18240...	[more]
A0A061DZU3_THECC	1.9e-96	54.47	Dicer-like 1 isoform 1 OS=Theobroma cacao GN=TCM_005016 PE=4 SV=1	[more]
W9S6M5_9ROSA	5.5e-91	51.00	Endoribonuclease Dicer-1-like protein OS=Morus notabilis GN=L484_019609 PE=4 SV=...	[more]

BLAST of MELO3C005931 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01040.2	6.9e-53	44.30	dicer-like 1	[more]
AT3G03300.1	1.1e-10	47.56	dicer-like 2	[more]
AT5G20320.1	6.1e-09	44.44	dicer-like 4	[more]

BLAST of MELO3C005931 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074701\|ref\|XP_008437750.1\|	6.2e-229	100.00	PREDICTED: endoribonuclease Dicer homolog 1 [Cucumis melo]	[more]
gi\|778676576\|ref\|XP_011650612.1\|	1.2e-208	92.56	PREDICTED: endoribonuclease Dicer homolog 1 [Cucumis sativus]	[more]
gi\|802694114\|ref\|XP_012083084.1\|	4.3e-97	52.45	PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]	[more]
gi\|566158690\|ref\|XP_006386668.1\|	1.6e-96	56.05	Endoribonuclease Dicer family protein [Populus trichocarpa]	[more]
gi\|590720643\|ref\|XP_007051386.1\|	2.8e-96	54.47	Dicer-like 1 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006935	Helicase/UvrB_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016787	hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52618	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005931T1	MELO3C005931T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52618	MU52618	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 327..391 score: 1.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 318..391 score: 2.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 306..391 score: 1.88
None	No IPR available	PANTHER	PTHR14950	HELICASE-RELATED	coord: 294..390 score: 1.0
None	No IPR available	PANTHER	PTHR14950:SF3	ENDORIBONUCLEASE DICER HOMOLOG 1	coord: 294..390 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005931	Cla021061	Watermelon (97103) v1	mewmB461
MELO3C005931	Carg25074	Silver-seed gourd	carmeB0985

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005931	Cucumber (Chinese Long) v3	cucmeB236
MELO3C005931	Watermelon (97103) v2	mewmbB434
MELO3C005931	Wax gourd	mewgoB540
MELO3C005931	Cucumber (Gy14) v1	cgymeB439
MELO3C005931	Cucurbita maxima (Rimu)	cmameB766
MELO3C005931	Cucurbita moschata (Rifu)	cmomeB755
MELO3C005931	Wild cucumber (PI 183967)	cpimeB230
MELO3C005931	Cucumber (Chinese Long) v2	cumeB236
MELO3C005931	Watermelon (Charleston Gray)	mewcgB427
MELO3C005931	Cucurbita pepo (Zucchini)	cpemeB815
MELO3C005931	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C005931	Cucumber (Gy14) v2	cgybmeB200