MELO3C005854 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C005854
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta''
Locationchr9 : 23651031 .. 23651555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGAGGTTCCAAGAGCTGAAGAGGAAATTTGATAGGCTGAAACCTCTTGCTGAAAAGCAAGAGCAGAGAGTTCGTTACTATGAGACTAGAGCCCAAAACGTGACTATTGCTTGCCTTATATGGAACCGCCTGTTCGTCGTTGGTATGTATCACATTTCTTCCTCCCTCTCCCTCCTCAATTGCACTCATCATTTGTGGATGGTTTTAGGCTTCAGCCTTGCCTCTACTTCTCTCTACCTTTTGTTTTTCCTTGAGGCTGCTTTCATGTTGTATCGGGCTCAAAATCAATTGGATATTATTTGCAAGCAACAGAATGAAATCTCCCAACAGATTTTGAATACTGGAAACCCAGATGATTATGAGGGTGGAGATTCAATTTCAAGTGATAATGGGTGGTTGGAGTTGAGTTTCGAGGTGCAGTTACTTCATGAGTACCACCGGGCCATTATTTACACTTGTCCAGAGAAAATTTTATATTGCTTCCACTATATCTACTCTACTTGCTGTTGCTGCTTTTGA

mRNA sequence

ATGGCCATGAGGTTCCAAGAGCTGAAGAGGAAATTTGATAGGCTGAAACCTCTTGCTGAAAAGCAAGAGCAGAGAGTTCGTTACTATGAGACTAGAGCCCAAAACGTGACTATTGCTTGCCTTATATGGAACCGCCTGTTCGTCGTTGGTATGTATCACATTTCTTCCTCCCTCTCCCTCCTCAATTGCACTCATCATTTGTGGATGGTTTTAGGCTTCAGCCTTGCCTCTACTTCTCTCTACCTTTTGTTTTTCCTTGAGGCTGCTTTCATGTTGTATCGGGCTCAAAATCAATTGGATATTATTTGCAAGCAACAGAATGAAATCTCCCAACAGATTTTGAATACTGGAAACCCAGATGATTATGAGGGTGGAGATTCAATTTCAAGTGATAATGGGTGGTTGGAGTTGAGTTTCGAGGTGCAGTTACTTCATGAGTACCACCGGGCCATTATTTACACTTGTCCAGAGAAAATTTTATATTGCTTCCACTATATCTACTCTACTTGCTGTTGCTGCTTTTGA

Coding sequence (CDS)

ATGGCCATGAGGTTCCAAGAGCTGAAGAGGAAATTTGATAGGCTGAAACCTCTTGCTGAAAAGCAAGAGCAGAGAGTTCGTTACTATGAGACTAGAGCCCAAAACGTGACTATTGCTTGCCTTATATGGAACCGCCTGTTCGTCGTTGGTATGTATCACATTTCTTCCTCCCTCTCCCTCCTCAATTGCACTCATCATTTGTGGATGGTTTTAGGCTTCAGCCTTGCCTCTACTTCTCTCTACCTTTTGTTTTTCCTTGAGGCTGCTTTCATGTTGTATCGGGCTCAAAATCAATTGGATATTATTTGCAAGCAACAGAATGAAATCTCCCAACAGATTTTGAATACTGGAAACCCAGATGATTATGAGGGTGGAGATTCAATTTCAAGTGATAATGGGTGGTTGGAGTTGAGTTTCGAGGTGCAGTTACTTCATGAGTACCACCGGGCCATTATTTACACTTGTCCAGAGAAAATTTTATATTGCTTCCACTATATCTACTCTACTTGCTGTTGCTGCTTTTGA

Protein sequence

MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSLLNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPDDYEGGDSISSDNGWLELSFEVQLLHEYHRAIIYTCPEKILYCFHYIYSTCCCCF*
Homology
[Close]
BLAST of MELO3C005854 vs. TrEMBL
Match: E5GBE1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 123/148 (83.11%), Postives = 130/148 (87.84%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM   ELKR FD LK LAEKQEQRVRYYETRAQNV IACLIW+RLFVVGMYH SSSLSL
Sbjct: 1   MAMELGELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCT HLWMVLGFSLASTSLYLLFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTPHLWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLHEYH 149
           D E GD+ SSDNG LELSF+VQLL +YH
Sbjct: 121 DDEAGDTFSSDNGGLELSFQVQLL-QYH 147

[Close]
BLAST of MELO3C005854 vs. TrEMBL
Match: A0A0A0KM15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-59
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM F ELKRKFD LK LAEKQEQRVRYYETRAQN+ IA LIW+RLF VGMYH SSSLSL
Sbjct: 1   MAMEFGELKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCTHHLWMV  F L+STSLY LFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTHHLWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLHEYH 149
           D E GDSISSDNGWLELSF+VQLL  YH
Sbjct: 121 DDEAGDSISSDNGWLELSFQVQLL-PYH 147

[Close]
BLAST of MELO3C005854 vs. TrEMBL
Match: A0A0A0KUT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 6   QELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSLLNCTH 65
           +E+++  + L  +A+ Q+ RV  YET  QN+ IA L+W RLF   +   S + SLL+C  
Sbjct: 7   EEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHC-K 66

Query: 66  HLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQI 114
           H W++   +  S  LY+L F+  + ML R + QL +I +QQ ++ QQI
Sbjct: 67  HWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQI 113

[Close]
BLAST of MELO3C005854 vs. TrEMBL
Match: A0A0A0KJZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-13
Identity = 55/141 (39.01%), Postives = 74/141 (52.48%), Query Frame = 1 

Query: 7   ELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSLLNCTHH 66
           +L++ F  LK + + QE  +RY ET+ QN+ +  L W RLF  G    S S    +    
Sbjct: 83  DLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGF---SFSFKCKDW--- 142

Query: 67  LWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD----DY 126
            W+VL  +L ST LYLL F++A  ML R  +QL II K+  EI QQIL   N D      
Sbjct: 143 -WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSM 202

Query: 127 EGGDSISSDNGWLELSFEVQL 144
           EGG+         ELSF  ++
Sbjct: 203 EGGECCDG----FELSFHERM 212

[Close]
BLAST of MELO3C005854 vs. TrEMBL
Match: A0A0A0KND2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139800 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.3e-11
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 1 

Query: 3   MRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSLLN 62
           M F++L R F  LK + ++QE+RV +++++ QN+ I  LI+ RL + G   I+ +     
Sbjct: 1   MEFRDL-RSFQELKVIYKEQEERVCHHDSKVQNLVIGYLIFGRLLIFG---IAQTFLPFK 60

Query: 63  CTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPDD- 122
           C    W++L  +L+ T +Y    L+A  ML RAQ QLDII ++  EI Q+IL T N  + 
Sbjct: 61  CKDW-WVILALTLSCTLIYFSLLLDAVTMLRRAQYQLDIIREELIEICQRILETQNQKEL 120

Query: 123 -------YEGGDSISSDNGWLELSFEVQLLHEYHRAII 153
                   E G+  S+D       F  ++L   H +I+
Sbjct: 121 VDLTQLTMEAGE--SNDGFDYNFGFHKKMLMLDHSSIV 151

[Close]
BLAST of MELO3C005854 vs. NCBI nr
Match: gi|659074338|ref|XP_008437550.1| (PREDICTED: uncharacterized protein LOC103482931 isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-59
Identity = 123/148 (83.11%), Postives = 130/148 (87.84%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM   ELKR FD LK LAEKQEQRVRYYETRAQNV IACLIW+RLFVVGMYH SSSLSL
Sbjct: 1   MAMELGELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCT HLWMVLGFSLASTSLYLLFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTPHLWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLHEYH 149
           D E GD+ SSDNG LELSF+VQLL +YH
Sbjct: 121 DDEAGDTFSSDNGGLELSFQVQLL-QYH 147

[Close]
BLAST of MELO3C005854 vs. NCBI nr
Match: gi|307135919|gb|ADN33782.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-59
Identity = 123/148 (83.11%), Postives = 130/148 (87.84%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM   ELKR FD LK LAEKQEQRVRYYETRAQNV IACLIW+RLFVVGMYH SSSLSL
Sbjct: 1   MAMELGELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCT HLWMVLGFSLASTSLYLLFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTPHLWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLHEYH 149
           D E GD+ SSDNG LELSF+VQLL +YH
Sbjct: 121 DDEAGDTFSSDNGGLELSFQVQLL-QYH 147

[Close]
BLAST of MELO3C005854 vs. NCBI nr
Match: gi|700194727|gb|KGN49904.1| (hypothetical protein Csa_5G139820 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 6.0e-59
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM F ELKRKFD LK LAEKQEQRVRYYETRAQN+ IA LIW+RLF VGMYH SSSLSL
Sbjct: 1   MAMEFGELKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCTHHLWMV  F L+STSLY LFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTHHLWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLHEYH 149
           D E GDSISSDNGWLELSF+VQLL  YH
Sbjct: 121 DDEAGDSISSDNGWLELSFQVQLL-PYH 147

[Close]
BLAST of MELO3C005854 vs. NCBI nr
Match: gi|659074340|ref|XP_008437551.1| (PREDICTED: uncharacterized protein LOC103482931 isoform X2 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-58
Identity = 119/145 (82.07%), Postives = 126/145 (86.90%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM   ELKR FD LK LAEKQEQRVRYYETRAQNV IACLIW+RLFVVGMYH SSSLSL
Sbjct: 1   MAMELGELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCT HLWMVLGFSLASTSLYLLFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTPHLWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLH 146
           D E GD+ SSDNG LELSF+  +LH
Sbjct: 121 DDEAGDTFSSDNGGLELSFQEWMLH 145

[Close]
BLAST of MELO3C005854 vs. NCBI nr
Match: gi|778698994|ref|XP_011654636.1| (PREDICTED: uncharacterized protein LOC105435427 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 6.7e-58
Identity = 117/145 (80.69%), Postives = 125/145 (86.21%), Query Frame = 1 

Query: 1   MAMRFQELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWNRLFVVGMYHISSSLSL 60
           MAM F ELKRKFD LK LAEKQEQRVRYYETRAQN+ IA LIW+RLF VGMYH SSSLSL
Sbjct: 1   MAMEFGELKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSL 60

Query: 61  LNCTHHLWMVLGFSLASTSLYLLFFLEAAFMLYRAQNQLDIICKQQNEISQQILNTGNPD 120
           LNCTHHLWMV  F L+STSLY LFFLEA FMLYRAQNQLDII K+Q EIS QILNTG+P+
Sbjct: 61  LNCTHHLWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPN 120

Query: 121 DYEGGDSISSDNGWLELSFEVQLLH 146
           D E GDSISSDNGWLELSF+  +LH
Sbjct: 121 DDEAGDSISSDNGWLELSFQEWMLH 145

The following BLAST results are available for this feature:
BLAST of MELO3C005854 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBE1_CUCME1.4e-5983.11Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KM15_CUCSA4.2e-5981.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139820 PE=4 SV=1[more]
A0A0A0KUT0_CUCSA3.5e-1337.96Uncharacterized protein OS=Cucumis sativus GN=Csa_5G562290 PE=4 SV=1[more]
A0A0A0KJZ3_CUCSA7.8e-1339.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139810 PE=4 SV=1[more]
A0A0A0KND2_CUCSA7.3e-1133.54Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139800 PE=4 SV=1[more]
BLAST of MELO3C005854 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074338|ref|XP_008437550.1|2.1e-5983.11PREDICTED: uncharacterized protein LOC103482931 isoform X1 [Cucumis melo][more]
gi|307135919|gb|ADN33782.1|2.1e-5983.11hypothetical protein [Cucumis melo subsp. melo][more]
gi|700194727|gb|KGN49904.1|6.0e-5981.76hypothetical protein Csa_5G139820 [Cucumis sativus][more]
gi|659074340|ref|XP_008437551.1|5.1e-5882.07PREDICTED: uncharacterized protein LOC103482931 isoform X2 [Cucumis melo][more]
gi|778698994|ref|XP_011654636.1|6.7e-5880.69PREDICTED: uncharacterized protein LOC105435427 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005854T1MELO3C005854T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C005854Lsi09G000620Bottle gourd (USVL1VR-Ls)lsimeB012
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005854Watermelon (97103) v2mewmbB008
MELO3C005854Watermelon (97103) v2mewmbB023
MELO3C005854Watermelon (97103) v2mewmbB027
MELO3C005854Wax gourdmewgoB037
MELO3C005854Melon (DHL92) v3.5.1memeB016
MELO3C005854Melon (DHL92) v3.5.1memeB018
MELO3C005854Melon (DHL92) v3.5.1memeB022
MELO3C005854Cucumber (Gy14) v1cgymeB138
MELO3C005854Cucumber (Gy14) v1cgymeB367
MELO3C005854Cucumber (Gy14) v1cgymeB426
MELO3C005854Cucurbita maxima (Rimu)cmameB257
MELO3C005854Cucurbita maxima (Rimu)cmameB283
MELO3C005854Cucurbita maxima (Rimu)cmameB349
MELO3C005854Cucurbita maxima (Rimu)cmameB527
MELO3C005854Cucurbita moschata (Rifu)cmomeB198
MELO3C005854Cucurbita moschata (Rifu)cmomeB246
MELO3C005854Cucurbita moschata (Rifu)cmomeB275
MELO3C005854Cucurbita moschata (Rifu)cmomeB341
MELO3C005854Cucurbita moschata (Rifu)cmomeB515
MELO3C005854Wild cucumber (PI 183967)cpimeB166
MELO3C005854Wild cucumber (PI 183967)cpimeB261
MELO3C005854Wild cucumber (PI 183967)cpimeB348
MELO3C005854Cucumber (Chinese Long) v2cumeB175
MELO3C005854Cucumber (Chinese Long) v2cumeB357
MELO3C005854Watermelon (Charleston Gray)mewcgB026
MELO3C005854Watermelon (Charleston Gray)mewcgB018
MELO3C005854Watermelon (Charleston Gray)mewcgB030
MELO3C005854Watermelon (97103) v1mewmB018
MELO3C005854Watermelon (97103) v1mewmB022
MELO3C005854Watermelon (97103) v1mewmB029
MELO3C005854Cucurbita pepo (Zucchini)cpemeB017
MELO3C005854Cucurbita pepo (Zucchini)cpemeB148
MELO3C005854Cucurbita pepo (Zucchini)cpemeB179
MELO3C005854Cucurbita pepo (Zucchini)cpemeB651
MELO3C005854Bottle gourd (USVL1VR-Ls)lsimeB336
MELO3C005854Bottle gourd (USVL1VR-Ls)lsimeB341
MELO3C005854Cucumber (Gy14) v2cgybmeB142
MELO3C005854Cucumber (Gy14) v2cgybmeB229
MELO3C005854Cucumber (Gy14) v2cgybmeB298
MELO3C005854Silver-seed gourdcarmeB0302
MELO3C005854Silver-seed gourdcarmeB0542
MELO3C005854Silver-seed gourdcarmeB0962
MELO3C005854Cucumber (Chinese Long) v3cucmeB168
MELO3C005854Cucumber (Chinese Long) v3cucmeB268
MELO3C005854Cucumber (Chinese Long) v3cucmeB357
MELO3C005854Cucumber (Chinese Long) v3cucmeB369