MELO3C005730.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C005730.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr09 : 23794140 .. 23794346 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

mRNA sequence

ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

Coding sequence (CDS)

ATGCGAGTCCAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCAACCACCACTCAGTGTGGAGCGCCAAACACTCTCAACTGCACTTTATCTTTCTATCCGTTCCCATTGGGCCAAGCGGCTCCACACACCATTTTATATGTTGGTGTGTCCGTGTCCGCAACTCGGCCCGTTGGGGCAACGAGTTGA

Protein sequence

MRVQDEEEEEEEEEEEEEEGATTTQCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRPVGATS
Homology
[Close]
BLAST of MELO3C005730.2 vs. NCBI nr
Match: KGN50041.1 (hypothetical protein Csa_5G151570 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 25 QCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRPVGATS 69
          QCGAPNTLN TLSFYPFPLGQ APHTILYVGVSVSATRPVGATS
Sbjct: 17 QCGAPNTLNYTLSFYPFPLGQVAPHTILYVGVSVSATRPVGATS 60

[Close]
BLAST of MELO3C005730.2 vs. TrEMBL
Match: tr|A0A0A0KQT1|A0A0A0KQT1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151570 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-15
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 25 QCGAPNTLNCTLSFYPFPLGQAAPHTILYVGVSVSATRPVGATS 69
          QCGAPNTLN TLSFYPFPLGQ APHTILYVGVSVSATRPVGATS
Sbjct: 17 QCGAPNTLNYTLSFYPFPLGQVAPHTILYVGVSVSATRPVGATS 60

The following BLAST results are available for this feature:
BLAST of MELO3C005730.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50041.11.2e-1495.45hypothetical protein Csa_5G151570 [Cucumis sativus][more]
BLAST of MELO3C005730.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C005730.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C005730.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQT1|A0A0A0KQT1_CUCSA7.8e-1595.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005730.2.1MELO3C005730.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C005730.2Csa5G151570Cucumber (Chinese Long) v2cumedB336
MELO3C005730.2CSPI05G04850Wild cucumber (PI 183967)cpimedB338
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005730.2Cucumber (Gy14) v2cgybmedB141
MELO3C005730.2Cucumber (Gy14) v2cgybmedB229
MELO3C005730.2Cucumber (Gy14) v2cgybmedB298
MELO3C005730.2Cucumber (Gy14) v1cgymedB137
MELO3C005730.2Cucumber (Gy14) v1cgymedB494
MELO3C005730.2Cucurbita maxima (Rimu)cmamedB284
MELO3C005730.2Cucurbita maxima (Rimu)cmamedB328
MELO3C005730.2Cucurbita maxima (Rimu)cmamedB609
MELO3C005730.2Cucurbita maxima (Rimu)cmamedB724
MELO3C005730.2Cucurbita moschata (Rifu)cmomedB270
MELO3C005730.2Cucurbita moschata (Rifu)cmomedB314
MELO3C005730.2Cucurbita moschata (Rifu)cmomedB596
MELO3C005730.2Cucurbita moschata (Rifu)cmomedB717
MELO3C005730.2Cucurbita pepo (Zucchini)cpemedB183
MELO3C005730.2Cucurbita pepo (Zucchini)cpemedB217
MELO3C005730.2Cucurbita pepo (Zucchini)cpemedB774
MELO3C005730.2Wild cucumber (PI 183967)cpimedB159
MELO3C005730.2Wild cucumber (PI 183967)cpimedB256
MELO3C005730.2Cucumber (Chinese Long) v2cumedB158
MELO3C005730.2Cucumber (Chinese Long) v2cumedB257
MELO3C005730.2Melon (DHL92) v3.6.1medmedB018
MELO3C005730.2Melon (DHL92) v3.6.1medmedB019
MELO3C005730.2Bottle gourd (USVL1VR-Ls)lsimedB012
MELO3C005730.2Bottle gourd (USVL1VR-Ls)lsimedB355
MELO3C005730.2Watermelon (Charleston Gray)medwcgB016
MELO3C005730.2Watermelon (Charleston Gray)medwcgB030
MELO3C005730.2Watermelon (Charleston Gray)medwcgB032
MELO3C005730.2Watermelon (97103) v1medwmB019
MELO3C005730.2Watermelon (97103) v1medwmB027
MELO3C005730.2Silver-seed gourdcarmedB0369
MELO3C005730.2Silver-seed gourdcarmedB0910
MELO3C005730.2Cucumber (Chinese Long) v3cucmedB160
MELO3C005730.2Cucumber (Chinese Long) v3cucmedB262
MELO3C005730.2Cucumber (Chinese Long) v3cucmedB349
MELO3C005730.2Watermelon (97103) v2medwmbB006
MELO3C005730.2Watermelon (97103) v2medwmbB025
MELO3C005730.2Wax gourdmedwgoB009