MELO3C005453 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005453
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Leucine-rich repeat receptor-like protein kinase
Location	chr9 : 20580343 .. 20580567 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGACCTAACATACTTGGAATCATAGTTCCTATCGGAACGGGAGAAATTGAGTCATTAGAATCGTCTGACCTATCTTTCAATAATTTTTCAGGCAACATTCCTCGAGAGGGTCATCTTTCCACATTCAACGAGGCTTCAAGTTTTGATAATAATCCATATCTTTGCAGAGAACCACTCCCAATAAAATGTGTGACTGAGAATCCATGGAAACGACATTGA

mRNA sequence

ATGACAAGACCTAACATACTTGGAATCATAGTTCCTATCGGAACGGGAGAAATTGAGTCATTAGAATCGTCTGACCTATCTTTCAATAATTTTTCAGGCAACATTCCTCGAGAGGGTCATCTTTCCACATTCAACGAGGCTTCAAGTTTTGATAATAATCCATATCTTTGCAGAGAACCACTCCCAATAAAATGTGTGACTGAGAATCCATGGAAACGACATTGA

Coding sequence (CDS)

ATGACAAGACCTAACATACTTGGAATCATAGTTCCTATCGGAACGGGAGAAATTGAGTCATTAGAATCGTCTGACCTATCTTTCAATAATTTTTCAGGCAACATTCCTCGAGAGGGTCATCTTTCCACATTCAACGAGGCTTCAAGTTTTGATAATAATCCATATCTTTGCAGAGAACCACTCCCAATAAAATGTGTGACTGAGAATCCATGGAAACGACATTGA

Protein sequence

MTRPNILGIIVPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIKCVTENPWKRH*

Homology

[Close]

BLAST of MELO3C005453 vs. TrEMBL
Match: A0A0K9QYH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133890 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 11  VPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIKCVTEN 70
           +PI  G I SLES DLS+NN SG IP    L T N+  S+  NPYLC +PL  KC ++N
Sbjct: 674 IPISMGAIFSLESLDLSYNNLSGQIPTGNQLQTLNDPLSYAGNPYLCGDPLAKKCKSDN 732

[Close]

BLAST of MELO3C005453 vs. TrEMBL
Match: A0A0K9QYH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133890 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-04
Identity = 29/83 (34.94%), Postives = 39/83 (46.99%), Query Frame = 1


Query: 11  VPIGTGEIESLE------------------------SSDLSFNNFSGNIPREGHLSTFNE 70
           +P+  G ++SLE                        S DLS+NN SG IP    L T N+
Sbjct: 650 IPMSIGCLKSLESLDLSRNKLQGTIPISMGAIFSLESLDLSYNNLSGQIPTGNQLQTLND 709

HSP 2 Score: 29.3 bits (64), Expect = 2.6e+03
Identity = 17/45 (37.78%), Postives = 23/45 (51.11%), Query Frame = 1


Query: 11  VPIGTGE-IESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNP 55
           +P+  GE   SL+S  LS NN SG IP    + +  +     NNP
Sbjct: 195 IPVWLGEEFRSLKSLSLSGNNLSGEIPTSLGMLSSMKHLDISNNP 239

HSP 3 Score: 64.7 bits (156), Expect = 5.5e-08
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1


Query: 5    NILGIIVPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIK 64
            N L  I+P    ++ +LE  DLS+NNFSG IP    L T ++ S +  NPYLC +PLP K
Sbjct: 1052 NKLHGIIPTSMADLYALEHIDLSYNNFSGQIPTGRQLQTLDDPSKYAGNPYLCGDPLPKK 1111

Query: 65   CVTEN 70
            C  +N
Sbjct: 1112 CKNKN 1116

[Close]

BLAST of MELO3C005453 vs. TrEMBL
Match: A0A0J8CWA4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g055140 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 1.0e+02
Identity = 16/40 (40.00%), Postives = 26/40 (65.00%), Query Frame = 1


Query: 5   NILGIIVPIGTGEIESLESSDLSFNNFSGNIPRE-GHLST 44
           N++   +P+    + S+E+ D+SFNN SG IP+  G LS+
Sbjct: 536 NMISGEIPMSLSMLSSMENLDISFNNISGEIPKSLGMLSS 575

HSP 2 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 5  NILGIIVPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIK 64
          N+    +P+    + SL + +LS+NN SG IP  GH+STF++AS++  N  LC  PLP K
Sbjct: 23 NLFSSGIPLSMSSMNSLGALNLSYNNLSGPIPFAGHMSTFDDASTYYGNENLCGPPLPKK 82

Query: 65 C 66
          C
Sbjct: 83 C 83

[Close]

BLAST of MELO3C005453 vs. TrEMBL
Match: W1P2J1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01798p00005570 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-06
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 11 VPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIKC 66
          +P+    + SL++ + S+NN SG IP  GH+STF++AS++  N  LC  PLP KC
Sbjct: 29 IPLSMSSMNSLDALNWSYNNLSGPIPFAGHMSTFDDASTYYGNENLCGPPLPKKC 83

[Close]

BLAST of MELO3C005453 vs. TrEMBL
Match: W1NIJ5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00009p00246120 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-06
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 11  VPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIKC 66
           +P+    +  L + +LS+NN SG IP  GH+STF++AS +  N +LC  PLP KC
Sbjct: 328 IPLSMSSMNFLSTLNLSYNNLSGPIPFTGHMSTFDDASIYYGNEHLCGPPLPKKC 382

[Close]

BLAST of MELO3C005453 vs. TAIR10
Match: AT1G75820.1 (AT1G75820.1 Leucine-rich receptor-like protein kinase family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 26/57 (45.61%), Postives = 31/57 (54.39%), Query Frame = 1


Query: 11  VPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREPLPIKCVT 68
           +P G G + SL + DLSFN+ SG +P  G    FNE +SF  N YLC  P  + C T
Sbjct: 568 IPTGIGNMTSLTTLDLSFNDLSGRVPLGGQFLVFNE-TSFAGNTYLCL-PHRVSCPT 622

[Close]

BLAST of MELO3C005453 vs. TAIR10
Match: AT4G20270.1 (AT4G20270.1 Leucine-rich receptor-like protein kinase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.6e-06
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1


Query: 11  VPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLC 58
           +P   G ++SL S+D S NNFSG++P  G  S FN  +SF  NP+LC
Sbjct: 578 LPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNN-TSFLGNPFLC 623

[Close]

BLAST of MELO3C005453 vs. NCBI nr
Match: gi|659073238|ref|XP_008467326.1| (PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X1 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1   MTRPNILGIIVPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREP 60
           ++  NI+GI VP   GE+ESLES DLSFNNFSGNIPREGHLSTFNEASSFDNN YLC +P
Sbjct: 800 LSHNNIIGI-VPAEIGEMESLESLDLSFNNFSGNIPREGHLSTFNEASSFDNNSYLCGDP 859

Query: 61  LPIKCVTEN 70
           LPIKCV EN
Sbjct: 860 LPIKCVIEN 867

[Close]

BLAST of MELO3C005453 vs. NCBI nr
Match: gi|659073240|ref|XP_008467327.1| (PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X2 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-21
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1   MTRPNILGIIVPIGTGEIESLESSDLSFNNFSGNIPREGHLSTFNEASSFDNNPYLCREP 60
           ++  NI+GI VP   GE+ESLES DLS+NNFSGNIPREGHLSTFNEASSFDNN YLC +P
Sbjct: 800 LSHNNIIGI-VPAEIGEMESLESLDLSYNNFSGNIPREGHLSTFNEASSFDNNSYLCGDP 859

Query: 61  LPIKCVTEN 70
           LPIKCV EN
Sbjct: 860 LPIKCVIEN 867

[Close]

BLAST of MELO3C005453 vs. NCBI nr
Match: gi|659074635|ref|XP_008437710.1| (PREDICTED: receptor-like protein 12 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 51/92 (55.43%), Postives = 58/92 (63.04%), Query Frame = 1


Query: 5    NILGIIVPIGTGEIESLESSDLSF------------------------NNFSGNIPREGH 64
            N++G I P+  GE+ESLES DLSF                        NNFSGNIPREGH
Sbjct: 917  NLIGTI-PMEIGELESLESLDLSFNKLSGRIPQSLSKLNSLGALELSHNNFSGNIPREGH 976

Query: 65   LSTFNEASSFDNNPYLCREPLPIKCVTENPWK 73
            LSTFNEASSFD N +LC  PLPIKCV ENP++
Sbjct: 977  LSTFNEASSFDENLHLCGNPLPIKCVNENPYE 1007

[Close]

BLAST of MELO3C005453 vs. NCBI nr
Match: gi|659074631|ref|XP_008437708.1| (PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 51/93 (54.84%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 1   MTRPNILGIIVPIGTGEIESLESSDLSF------------------------NNFSGNIP 60
           ++  N++GI VP   GEIESLES DLSF                        NNFSG IP
Sbjct: 527 LSHNNLIGI-VPTEIGEIESLESLDLSFNQLSGPIPLSLSKLNSLGMLKLSHNNFSGEIP 586

Query: 61  REGHLSTFNEASSFDNNPYLCREPLPIKCVTEN 70
           REGHLSTFNEASSFD NP LC +PLP+KCV EN
Sbjct: 587 REGHLSTFNEASSFDENPNLCGDPLPMKCVKEN 618

[Close]

BLAST of MELO3C005453 vs. NCBI nr
Match: gi|778700366|ref|XP_004143731.2| (PREDICTED: receptor-like protein 12 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 1   MTRPNILGIIVPIGTGEIESLESSDLSF------------------------NNFSGNIP 60
           ++  NI+GI VP   G++ESLES DLSF                        NNFSGNIP
Sbjct: 799 LSHNNIIGI-VPAEIGDMESLESLDLSFNRLSGAIPLSLSKLNSLGTLKLSHNNFSGNIP 858

Query: 61  REGHLSTFNEASSFDNNPYLCREPLPIKCVTENPWK 73
           R+GHLSTF +ASSFDNN YLC +PLPIKCV EN ++
Sbjct: 859 RDGHLSTFIDASSFDNNSYLCGDPLPIKCVVENSFE 893

The following BLAST results are available for this feature:

BLAST of MELO3C005453 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0K9QYH1_SPIOL	1.4e-08	52.54	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133890 PE=4 SV=1	[more]
A0A0K9QYH1_SPIOL	4.8e-04	34.94	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133890 PE=4 SV=1	[more]
A0A0J8CWA4_BETVU	1.0e+02	40.00	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g055140 PE=4 S...	[more]
W1P2J1_AMBTC	5.1e-06	45.45	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01798p00005570 PE=4 SV=...	[more]
W1NIJ5_AMBTC	6.7e-06	45.45	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00009p00246120 PE=4 SV=...	[more]

BLAST of MELO3C005453 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75820.1	1.6e-06	45.61	Leucine-rich receptor-like protein kinase family protein	[more]
AT4G20270.1	4.6e-06	48.94	Leucine-rich receptor-like protein kinase family protein	[more]

BLAST of MELO3C005453 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073238\|ref\|XP_008467326.1\|	1.6e-21	78.26	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 i...	[more]
gi\|659073240\|ref\|XP_008467327.1\|	3.6e-21	76.81	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 i...	[more]
gi\|659074635\|ref\|XP_008437710.1\|	2.1e-16	55.43	PREDICTED: receptor-like protein 12 [Cucumis melo]	[more]
gi\|659074631\|ref\|XP_008437708.1\|	1.0e-15	54.84	PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Cucumis melo]	[more]
gi\|778700366\|ref\|XP_004143731.2\|	1.3e-15	52.08	PREDICTED: receptor-like protein 12 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005453T1	MELO3C005453T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005453	Cucsa.129170	Cucumber (Gy14) v1	cgymeB207

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005453	Cucumber (Gy14) v2	cgybmeB301
MELO3C005453	Silver-seed gourd	carmeB0705
MELO3C005453	Silver-seed gourd	carmeB1002
MELO3C005453	Cucumber (Chinese Long) v3	cucmeB360
MELO3C005453	Watermelon (97103) v2	mewmbB009
MELO3C005453	Watermelon (97103) v2	mewmbB035
MELO3C005453	Wax gourd	mewgoB016
MELO3C005453	Cucurbita maxima (Rimu)	cmameB256
MELO3C005453	Cucurbita maxima (Rimu)	cmameB531
MELO3C005453	Cucurbita moschata (Rifu)	cmomeB244
MELO3C005453	Cucurbita moschata (Rifu)	cmomeB520
MELO3C005453	Wild cucumber (PI 183967)	cpimeB351
MELO3C005453	Cucumber (Chinese Long) v2	cumeB359
MELO3C005453	Watermelon (Charleston Gray)	mewcgB019
MELO3C005453	Watermelon (Charleston Gray)	mewcgB035
MELO3C005453	Watermelon (97103) v1	mewmB015
MELO3C005453	Watermelon (97103) v1	mewmB024
MELO3C005453	Cucurbita pepo (Zucchini)	cpemeB147
MELO3C005453	Cucurbita pepo (Zucchini)	cpemeB648
MELO3C005453	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005453	Bottle gourd (USVL1VR-Ls)	lsimeB428