MELO3C005443 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005443
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	3-dehydroquinate synthase
Location	chr9 : 20496862 .. 20498057 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCATATTTTAGCTTTACTCAATTTCCTTTCACAGAAAATTTTCCCATGACCAACGTTTTCTTTCCTTGTTTGAACTTTTTCAAGCTTGGTGGGAAAATGATGTGAAGAGAGTAAAGAAAGAGACACGCTGCCTCTGGACTAACTTTGAATTTGGAAATCCATGTCTCTACTCTACGATTCTTCGTCTTGTAGGTTTTAATTTCAGTTTCAGTTTACTTTCTGGGGAAGCAATGATCGACGATGAAAATCCTGCCATTACCGACGAAGAAAGAGCTCGAATCTCCCACAAATTCAGAGCTGCAAAAGCTCTACTTGCTCGTAAACGCCCTCGTCTTTTTCACTCCCATCACCCCATTTCTCAGTGTTCTTACAATACCCATTCAGCTAACCCACTTCCTCACAGGTTTGTATTCTCATAGTTATTGTGTTTGTTTTGATTTGGACTAAACAGAATTTTCGTAGCTTGCTCATTATTGCATTTTCCCTTTTTATGGAATCAAAGAAATATAAGTTTAAGATTTTGAGATTTCCCAAATGTTATTTTGCCATTTTAGTTCCAGAGTTGTGGGTTTTAATGCAAATGAAGCCACAGTTAGTGATATTGATGCAAAACGGGTTCCATTGGGAGAGATTTCGGTGAACACTCCGTTGTCGAAGTCATTTGCAACTGCAACTGATGCTGGTTCAAGTGGGTTGGGGTTAGATTGTCTCAAGACTCCTGTAAAAATTCCGTCGTGTTCTGGTATAAGAGATTCTTTCTCAGTTCCAAGTATTCTTGATGATGATTTTGATGAGTCTGCTTTGGAGGAAATTGATGCTCTGTTAGAGCAGAGCTCATCAGGGAGATCAATAAGACCAGCTTCAGATTCCAGCTTCCATGTGACAAATCAGGATCATGGTAGTTATAATGGCGATCTTAGTGCAGATTTTCAATCTGTAATTGGTGGCGGGAGTATAGAAGCCAAAGACTTATCATCTTCTTTGGATGCCTCGGAATCAAGAGCGGAGTTGATCATTTCTGACCCTGCAATGAAGAAGATTGGGACAATGCCAGAAGAGTATTCAAAATATCTGTTGTCTCTTAATGACAGACAACGAGAAGCAGCTTGTGGTGATATCTCAATCCCTTTAATGATCCTCGCTGGCCCAGGAAGCGGAAAGGTCTCACTTCTTCTTTCCTTGTTTGTACATTGA

mRNA sequence

GTCCATATTTTAGCTTTACTCAATTTCCTTTCACAGAAAATTTTCCCATGACCAACGTTTTCTTTCCTTGTTTGAACTTTTTCAAGCTTGGTGGGAAAATGATGTGAAGAGAGTAAAGAAAGAGACACGCTGCCTCTGGACTAACTTTGAATTTGGAAATCCATGTCTCTACTCTACGATTCTTCGTCTTGTAGGTTTTAATTTCAGTTTCAGTTTACTTTCTGGGGAAGCAATGATCGACGATGAAAATCCTGCCATTACCGACGAAGAAAGAGCTCGAATCTCCCACAAATTCAGAGCTGCAAAAGCTCTACTTGCTCGTAAACGCCCTCGTCTTTTTCACTCCCATCACCCCATTTCTCAGTGTTCTTACAATACCCATTCAGCTAACCCACTTCCTCACAGTTCCAGAGTTGTGGGTTTTAATGCAAATGAAGCCACAGTTAGTGATATTGATGCAAAACGGGTTCCATTGGGAGAGATTTCGGTGAACACTCCGTTGTCGAAGTCATTTGCAACTGCAACTGATGCTGGTTCAAGTGGGTTGGGGTTAGATTGTCTCAAGACTCCTGTAAAAATTCCGTCGTGTTCTGGTATAAGAGATTCTTTCTCAGTTCCAAGTATTCTTGATGATGATTTTGATGAGTCTGCTTTGGAGGAAATTGATGCTCTGTTAGAGCAGAGCTCATCAGGGAGATCAATAAGACCAGCTTCAGATTCCAGCTTCCATGTGACAAATCAGGATCATGGTAGTTATAATGGCGATCTTAGTGCAGATTTTCAATCTGTAATTGGTGGCGGGAGTATAGAAGCCAAAGACTTATCATCTTCTTTGGATGCCTCGGAATCAAGAGCGGAGTTGATCATTTCTGACCCTGCAATGAAGAAGATTGGGACAATGCCAGAAGAGTATTCAAAATATCTGTTGTCTCTTAATGACAGACAACGAGAAGCAGCTTGTGGTGATATCTCAATCCCTTTAATGATCCTCGCTGGCCCAGGAAGCGGAAAGGTCTCACTTCTTCTTTCCTTGTTTGTACATTGA

Coding sequence (CDS)

ATGATCGACGATGAAAATCCTGCCATTACCGACGAAGAAAGAGCTCGAATCTCCCACAAATTCAGAGCTGCAAAAGCTCTACTTGCTCGTAAACGCCCTCGTCTTTTTCACTCCCATCACCCCATTTCTCAGTGTTCTTACAATACCCATTCAGCTAACCCACTTCCTCACAGTTCCAGAGTTGTGGGTTTTAATGCAAATGAAGCCACAGTTAGTGATATTGATGCAAAACGGGTTCCATTGGGAGAGATTTCGGTGAACACTCCGTTGTCGAAGTCATTTGCAACTGCAACTGATGCTGGTTCAAGTGGGTTGGGGTTAGATTGTCTCAAGACTCCTGTAAAAATTCCGTCGTGTTCTGGTATAAGAGATTCTTTCTCAGTTCCAAGTATTCTTGATGATGATTTTGATGAGTCTGCTTTGGAGGAAATTGATGCTCTGTTAGAGCAGAGCTCATCAGGGAGATCAATAAGACCAGCTTCAGATTCCAGCTTCCATGTGACAAATCAGGATCATGGTAGTTATAATGGCGATCTTAGTGCAGATTTTCAATCTGTAATTGGTGGCGGGAGTATAGAAGCCAAAGACTTATCATCTTCTTTGGATGCCTCGGAATCAAGAGCGGAGTTGATCATTTCTGACCCTGCAATGAAGAAGATTGGGACAATGCCAGAAGAGTATTCAAAATATCTGTTGTCTCTTAATGACAGACAACGAGAAGCAGCTTGTGGTGATATCTCAATCCCTTTAATGATCCTCGCTGGCCCAGGAAGCGGAAAGGTCTCACTTCTTCTTTCCTTGTTTGTACATTGA

Protein sequence

MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSRVVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLSADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQREAACGDISIPLMILAGPGSGKVSLLLSLFVH*

Homology

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BLAST of MELO3C005443 vs. Swiss-Prot
Match: SRS2L_ARATH (ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana GN=SRS2 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 97/281 (34.52%), Postives = 137/281 (48.75%), Query Frame = 1


Query: 16  RISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSRVVGFNANEATVSDID 75
           RIS  FR+AK LL RKRP                +S+NPLP   R+      E+   +I+
Sbjct: 19  RISQSFRSAKPLLDRKRP-----------IENAPNSSNPLPQ--RMKESMDTESVSHNIN 78

Query: 76  AKRVPLGEISVNTPLSK------SFATATDAG------------------------SSGL 135
               PL E+S NTP  +      S+A     G                          G 
Sbjct: 79  FNSTPLMELSANTPYKRLKPEIESYADGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGS 138

Query: 136 GLDCLKTPVKIPSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSF 195
             +   TP+K P    + +  S  SILDDDFD+S LEEID + EQS+   + +  + S +
Sbjct: 139 LSEAFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIY 198

Query: 196 HVTNQDHGSYNGDLSADFQSVIGGGSIEAKDLSSSLDAS-ESRAELIISDPAMKKIGTMP 255
              ++D+ S +   S DF+ V      E  +  S++    +     I +DPA+  + +MP
Sbjct: 199 QTPSKDNKSSDPKASLDFRDV------EKFEPDSNVKLKLDEETPTIAADPAL--LNSMP 258

Query: 256 EEYSKYLLSLNDRQREAACGDISIPLMILAGPGSGKVSLLL 266
           +E SKY+LSLNDRQR+AAC +IS PLM++AGPGSGK S ++
Sbjct: 259 DECSKYMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMV 278

[Close]

BLAST of MELO3C005443 vs. TrEMBL
Match: A0A0A0KKX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168820 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 6.4e-123
Identity = 232/265 (87.55%), Postives = 237/265 (89.43%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDD NP ITDEERARISH FRAAKALLARKRPRLFHSHH ISQCSY THSANPLPHSSR
Sbjct: 1   MIDDGNPGITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           V  FNANEATV D DAKRVPLGEISVNTPLS           +GLGLDCLKTPVK P+CS
Sbjct: 61  VGDFNANEATVRDNDAKRVPLGEISVNTPLS-----------NGLGLDCLKTPVKTPTCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRS+RPASDSSFHVTNQDHGSYNG LS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVTNQDHGSYNGGLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDL  SLDASE RAELIISD AMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLLCSLDASEPRAELIISDSAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 254

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BLAST of MELO3C005443 vs. TrEMBL
Match: W9S1J2_9ROSA (ATP-dependent DNA helicase pcrA OS=Morus notabilis GN=L484_017084 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 118/278 (42.45%), Postives = 145/278 (52.16%), Query Frame = 1


Query: 9   ITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHS-SRVVGFNAN 68
           IT E+RARIS  FRAAKALLARKRPR             +  S+ P P   ++V   N  
Sbjct: 18  ITAEQRARISLNFRAAKALLARKRPR------------DDVVSSGPSPFLLNKVPDENGI 77

Query: 69  EATVSDIDAKRVPLGEISVNT----------PLSKSFATATDAGS--------SGLGLDC 128
           E        KRVPL EI +NT          PL +     + +G         +G  LD 
Sbjct: 78  ETPARVSGVKRVPLSEIPLNTLSPFTTRYNSPLGREQFCKSLSGDRIADVPVENGRVLDS 137

Query: 129 LKTPVKIPSCSGIRDSFSVPSILDDD--FDESALEEIDALLEQSSSGRSIRPASDSSFHV 188
            KTP+K P  S +  SF+VPS +DDD  FDES  EEIDAL  Q S  ++ RPA  S+  V
Sbjct: 138 FKTPIKHPEHSRLSGSFAVPSTIDDDDDFDESIFEEIDALCAQKSMEKAERPAPSSNSSV 197

Query: 189 TNQDHGSYNGDLSADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEY 248
             Q +     D+       +  G I    L    D  E R E + +   +  IG MPEE+
Sbjct: 198 EGQRNNCNGDDVLFSSSETLPSGGI----LGLGNDV-ECRTEDLDNSQGIT-IGKMPEEF 257

Query: 249 SKYLLSLNDRQREAACGDISIPLMILAGPGSGKVSLLL 266
           SKY LSLNDRQREAAC  IS PLMI+AGPGSGK S ++
Sbjct: 258 SKYTLSLNDRQREAACCHISRPLMIVAGPGSGKTSTMV 277

[Close]

BLAST of MELO3C005443 vs. TrEMBL
Match: B9RA07_RICCO (ATP-dependent DNA helicase pcrA, putative OS=Ricinus communis GN=RCOM_1502610 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.1e-33
Identity = 110/274 (40.15%), Postives = 149/274 (54.38%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           M  + +  +T E+RARIS  F+AAKALL+RKRP                     L  SS 
Sbjct: 1   MSKENSKIMTPEQRARISQNFKAAKALLSRKRP---------------------LDSSS- 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTP------------LSKSFATATDAGSSGLGLD 120
               ++ +A     + KRVPL E+  NTP            +S S  T+   G+    LD
Sbjct: 61  --SSSSKDAESPFTNVKRVPLMEMQTNTPSSFRANGIKSNDISCSRLTSVSLGNECC-LD 120

Query: 121 CLKTPVKI-PSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGR-SIRPASDSSFH 180
            + TP+K  P C G+ D+ S P++LDDDFDES L+EIDA+ +QSS+ +   +  + SSF 
Sbjct: 121 SVITPIKQHPECWGLSDNLSTPTLLDDDFDESILKEIDAICDQSSAAKVETQRFNSSSFS 180

Query: 181 VTNQDHGSYNGDLSADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEE 240
           V   +  +      +DF +++   SI A +   +    E R E   +   +K  G MPEE
Sbjct: 181 VDKSEENT------SDFTTLL---SIAASEDIRTQGTLEPRLEDKDTSQTVKH-GNMPEE 239

Query: 241 YSKYLLSLNDRQREAACGDISIPLMILAGPGSGK 261
           YSKYL SLN+RQREAAC  ISIPLMI+AGPGSGK
Sbjct: 241 YSKYLQSLNNRQREAACTHISIPLMIVAGPGSGK 239

[Close]

BLAST of MELO3C005443 vs. TrEMBL
Match: V4TAM2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033740mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 99/280 (35.36%), Postives = 143/280 (51.07%), Query Frame = 1


Query: 9   ITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSRVVGFNANE 68
           I +  R+R+S  FRAAK  L RKR R                     P+ SR       E
Sbjct: 17  INESHRSRVSQNFRAAKPFLDRKRQR------------QAVDFDRQFPNKSRDSNSIPIE 76

Query: 69  ATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLK----------------- 128
           +  S    KRVPL EI V+TP  ++            G+ C+                  
Sbjct: 77  SPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPLDISD 136

Query: 129 ---TPVKIPSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVT 188
              TP+K P    + +SFS+PS+LDDDFD+S L+EIDA+ E+S++ + +R A +S  +  
Sbjct: 137 PFITPIKQPEFFNMSESFSMPSLLDDDFDDSILQEIDAICEKSAA-KDVRKAQNSGIYEE 196

Query: 189 NQDHGSYNGDLSADFQSVIGGGSIE---AKDLSSSLDASESRAELIISDPAMKKIGTMPE 248
              + +    L+A  +SV    +I    + DL+  + +S  + + I +     K G MP+
Sbjct: 197 THQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTI----KTGNMPD 256

Query: 249 EYSKYLLSLNDRQREAACGDISIPLMILAGPGSGKVSLLL 266
           EYSKYL SLND+Q EAACGD+S PL+I+AGPGSGK S ++
Sbjct: 257 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKTSTMV 279

[Close]

BLAST of MELO3C005443 vs. TrEMBL
Match: A0A067DTD0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001127mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 97/275 (35.27%), Postives = 138/275 (50.18%), Query Frame = 1


Query: 9   ITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSRVVGFNANE 68
           I +  R+R+S  FRAAK  L RKR R                     P+ SR       E
Sbjct: 17  INESHRSRVSQNFRAAKPFLDRKRQR------------QAVDFDRQFPNKSRDSNSIPIE 76

Query: 69  ATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLK----------------- 128
           +  S    KRVPL EI V+TP  ++            G+ C+                  
Sbjct: 77  SPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPLDISD 136

Query: 129 ---TPVKIPSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVT 188
              TP+K P    + +SFS+PS LDDDFD+S L+EIDA+ E+S++ + +R A +S  +  
Sbjct: 137 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAA-KDVRKAQNSGIYEE 196

Query: 189 NQDHGSYNGDLSADFQSVIGGGSIE---AKDLSSSLDASESRAELIISDPAMKKIGTMPE 248
              + +    L+A  +SV    +I    + DL+  + +S  + + I +     K   MP+
Sbjct: 197 THQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTI----KTQNMPD 256

Query: 249 EYSKYLLSLNDRQREAACGDISIPLMILAGPGSGK 261
           EYSKYL SLND+Q EAACGD+S PL+I+AGPGSGK
Sbjct: 257 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK 274

[Close]

BLAST of MELO3C005443 vs. TAIR10
Match: AT4G25120.1 (AT4G25120.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-31
Identity = 97/281 (34.52%), Postives = 137/281 (48.75%), Query Frame = 1


Query: 16  RISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSRVVGFNANEATVSDID 75
           RIS  FR+AK LL RKRP                +S+NPLP   R+      E+   +I+
Sbjct: 19  RISQSFRSAKPLLDRKRP-----------IENAPNSSNPLPQ--RMKESMDTESVSHNIN 78

Query: 76  AKRVPLGEISVNTPLSK------SFATATDAG------------------------SSGL 135
               PL E+S NTP  +      S+A     G                          G 
Sbjct: 79  FNSTPLMELSANTPYKRLKPEIESYADGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGS 138

Query: 136 GLDCLKTPVKIPSCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSF 195
             +   TP+K P    + +  S  SILDDDFD+S LEEID + EQS+   + +  + S +
Sbjct: 139 LSEAFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIY 198

Query: 196 HVTNQDHGSYNGDLSADFQSVIGGGSIEAKDLSSSLDAS-ESRAELIISDPAMKKIGTMP 255
              ++D+ S +   S DF+ V      E  +  S++    +     I +DPA+  + +MP
Sbjct: 199 QTPSKDNKSSDPKASLDFRDV------EKFEPDSNVKLKLDEETPTIAADPAL--LNSMP 258

Query: 256 EEYSKYLLSLNDRQREAACGDISIPLMILAGPGSGKVSLLL 266
           +E SKY+LSLNDRQR+AAC +IS PLM++AGPGSGK S ++
Sbjct: 259 DECSKYMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMV 278

[Close]

BLAST of MELO3C005443 vs. NCBI nr
Match: gi|659073214|ref|XP_008467313.1| (PREDICTED: ATP-dependent DNA helicase srs2 isoform X1 [Cucumis melo])

HSP 1 Score: 515.4 bits (1326), Expect = 6.1e-143
Identity = 261/265 (98.49%), Postives = 263/265 (99.25%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR
Sbjct: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS
Sbjct: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 265

[Close]

BLAST of MELO3C005443 vs. NCBI nr
Match: gi|659073220|ref|XP_008467316.1| (PREDICTED: ATP-dependent DNA helicase srs2 isoform X2 [Cucumis melo])

HSP 1 Score: 485.3 bits (1248), Expect = 6.8e-134
Identity = 249/265 (93.96%), Postives = 252/265 (95.09%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR
Sbjct: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           VVGFNANEATVSDIDAKRVPLGEISVNTPLS           +GLGLDCLKTPVKIPSCS
Sbjct: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLS-----------NGLGLDCLKTPVKIPSCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 254

[Close]

BLAST of MELO3C005443 vs. NCBI nr
Match: gi|778700396|ref|XP_011654862.1| (PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 9.2e-123
Identity = 232/265 (87.55%), Postives = 237/265 (89.43%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDD NP ITDEERARISH FRAAKALLARKRPRLFHSHH ISQCSY THSANPLPHSSR
Sbjct: 1   MIDDGNPGITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           V  FNANEATV D DAKRVPLGEISVNTPLS           +GLGLDCLKTPVK P+CS
Sbjct: 61  VGDFNANEATVRDNDAKRVPLGEISVNTPLS-----------NGLGLDCLKTPVKTPTCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRS+RPASDSSFHVTNQDHGSYNG LS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVTNQDHGSYNGGLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDL  SLDASE RAELIISD AMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLLCSLDASEPRAELIISDSAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 254

[Close]

BLAST of MELO3C005443 vs. NCBI nr
Match: gi|778700389|ref|XP_011654860.1| (PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 9.2e-123
Identity = 232/265 (87.55%), Postives = 237/265 (89.43%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDD NP ITDEERARISH FRAAKALLARKRPRLFHSHH ISQCSY THSANPLPHSSR
Sbjct: 1   MIDDGNPGITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           V  FNANEATV D DAKRVPLGEISVNTPLS           +GLGLDCLKTPVK P+CS
Sbjct: 61  VGDFNANEATVRDNDAKRVPLGEISVNTPLS-----------NGLGLDCLKTPVKTPTCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRS+RPASDSSFHVTNQDHGSYNG LS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVTNQDHGSYNGGLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDL  SLDASE RAELIISD AMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLLCSLDASEPRAELIISDSAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 254

[Close]

BLAST of MELO3C005443 vs. NCBI nr
Match: gi|778700404|ref|XP_011654863.1| (PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X3 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 9.2e-123
Identity = 232/265 (87.55%), Postives = 237/265 (89.43%), Query Frame = 1


Query: 1   MIDDENPAITDEERARISHKFRAAKALLARKRPRLFHSHHPISQCSYNTHSANPLPHSSR 60
           MIDD NP ITDEERARISH FRAAKALLARKRPRLFHSHH ISQCSY THSANPLPHSSR
Sbjct: 1   MIDDGNPGITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSR 60

Query: 61  VVGFNANEATVSDIDAKRVPLGEISVNTPLSKSFATATDAGSSGLGLDCLKTPVKIPSCS 120
           V  FNANEATV D DAKRVPLGEISVNTPLS           +GLGLDCLKTPVK P+CS
Sbjct: 61  VGDFNANEATVRDNDAKRVPLGEISVNTPLS-----------NGLGLDCLKTPVKTPTCS 120

Query: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSIRPASDSSFHVTNQDHGSYNGDLS 180
           GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRS+RPASDSSFHVTNQDHGSYNG LS
Sbjct: 121 GIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVTNQDHGSYNGGLS 180

Query: 181 ADFQSVIGGGSIEAKDLSSSLDASESRAELIISDPAMKKIGTMPEEYSKYLLSLNDRQRE 240
           ADFQSVIGGGSIEAKDL  SLDASE RAELIISD AMKKIGTMPEEYSKYLLSLNDRQRE
Sbjct: 181 ADFQSVIGGGSIEAKDLLCSLDASEPRAELIISDSAMKKIGTMPEEYSKYLLSLNDRQRE 240

Query: 241 AACGDISIPLMILAGPGSGKVSLLL 266
           AACGDISIPLMILAGPGSGK S ++
Sbjct: 241 AACGDISIPLMILAGPGSGKTSTMV 254

The following BLAST results are available for this feature:

BLAST of MELO3C005443 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS2L_ARATH	1.2e-29	34.52	ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana G...	[more]

BLAST of MELO3C005443 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKX6_CUCSA	6.4e-123	87.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168820 PE=4 SV=1	[more]
W9S1J2_9ROSA	3.8e-35	42.45	ATP-dependent DNA helicase pcrA OS=Morus notabilis GN=L484_017084 PE=4 SV=1	[more]
B9RA07_RICCO	6.1e-33	40.15	ATP-dependent DNA helicase pcrA, putative OS=Ricinus communis GN=RCOM_1502610 PE...	[more]
V4TAM2_9ROSI	2.3e-32	35.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033740mg PE=4 SV=1	[more]
A0A067DTD0_CITSI	3.7e-30	35.27	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001127mg PE=4 SV=1	[more]

BLAST of MELO3C005443 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25120.1	6.7e-31	34.52	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of MELO3C005443 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073214\|ref\|XP_008467313.1\|	6.1e-143	98.49	PREDICTED: ATP-dependent DNA helicase srs2 isoform X1 [Cucumis melo]	[more]
gi\|659073220\|ref\|XP_008467316.1\|	6.8e-134	93.96	PREDICTED: ATP-dependent DNA helicase srs2 isoform X2 [Cucumis melo]	[more]
gi\|778700396\|ref\|XP_011654862.1\|	9.2e-123	87.55	PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2 [Cu...	[more]
gi\|778700389\|ref\|XP_011654860.1\|	9.2e-123	87.55	PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Cu...	[more]
gi\|778700404\|ref\|XP_011654863.1\|	9.2e-123	87.55	PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X3 [Cu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000212	DNA_helicase_UvrD/REP
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0004003	ATP-dependent DNA helicase activity
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0008152	metabolic process
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0036292	DNA rewinding
biological_process	GO:0008150	biological_process
cellular_component	GO:0005657	replication fork
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0043138	3'-5' DNA helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005443T1	MELO3C005443T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000212	DNA helicase, UvrD/REP type	PANTHER	PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	coord: 133..264 score: 2.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 229..268 score: 5.
None	No IPR available	PANTHER	PTHR11070:SF15	SUBFAMILY NOT NAMED	coord: 133..264 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005443	Csa5G168820	Cucumber (Chinese Long) v2	cumeB359
MELO3C005443	Cla003594	Watermelon (97103) v1	mewmB024
MELO3C005443	ClCG01G004930	Watermelon (Charleston Gray)	mewcgB019
MELO3C005443	Cla97C01G005150	Watermelon (97103) v2	mewmbB009
MELO3C005443	Bhi12G000617	Wax gourd	mewgoB008
MELO3C005443	CSPI05G07730	Wild cucumber (PI 183967)	cpimeB351
MELO3C005443	Cucsa.129080	Cucumber (Gy14) v1	cgymeB207
MELO3C005443	CmaCh02G009960	Cucurbita maxima (Rimu)	cmameB531
MELO3C005443	CmoCh02G010110	Cucurbita moschata (Rifu)	cmomeB520
MELO3C005443	Lsi09G005180	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005443	Cp4.1LG05g07280	Cucurbita pepo (Zucchini)	cpemeB648
MELO3C005443	CsGy5G005170	Cucumber (Gy14) v2	cgybmeB301
MELO3C005443	Carg08480	Silver-seed gourd	carmeB0705
MELO3C005443	CsaV3_5G005160	Cucumber (Chinese Long) v3	cucmeB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005443	Silver-seed gourd	carmeB1002
MELO3C005443	Watermelon (97103) v2	mewmbB035
MELO3C005443	Wax gourd	mewgoB016
MELO3C005443	Cucurbita maxima (Rimu)	cmameB256
MELO3C005443	Cucurbita moschata (Rifu)	cmomeB244
MELO3C005443	Watermelon (Charleston Gray)	mewcgB035
MELO3C005443	Watermelon (97103) v1	mewmB015
MELO3C005443	Cucurbita pepo (Zucchini)	cpemeB147
MELO3C005443	Bottle gourd (USVL1VR-Ls)	lsimeB428