MELO3C005431.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C005431.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionbeta-galactosidase-like
Locationchr09 : 21552756 .. 21552923 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAAATAATGAATATGTATAAACAAGCCAACCTCTTTGCATTACAAGGAGGGCCGATAATATTAGTTCCAATCGAAAATGAATATGGAAATGTGACGACACCTTATGGAGATGTAGGGAAAGTGTGCTCAAATGGCGAATCTTTGAATATCGGTGTTCCATGA

mRNA sequence

ATGCCAAAAATAATGAATATGTATAAACAAGCCAACCTCTTTGCATTACAAGGAGGGCCGATAATATTAGTTCCAATCGAAAATGAATATGGAAATGTGACGACACCTTATGGAGATGTAGGGAAAGTGTGCTCAAATGGCGAATCTTTGAATATCGGTGTTCCATGA

Coding sequence (CDS)

ATGCCAAAAATAATGAATATGTATAAACAAGCCAACCTCTTTGCATTACAAGGAGGGCCGATAATATTAGTTCCAATCGAAAATGAATATGGAAATGTGACGACACCTTATGGAGATGTAGGGAAAGTGTGCTCAAATGGCGAATCTTTGAATATCGGTGTTCCATGA

Protein sequence

MPKIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSNGESLNIGVP
Homology
[Close]
BLAST of MELO3C005431.2 vs. NCBI nr
Match: XP_022960835.1 (beta-galactosidase 7-like [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPII+  IENEYGNV TPYGD GK   N      ESLNIGVP
Sbjct: 156 KIVNMCKQANLFATQGGPIIIAQIENEYGNVMTPYGDAGKTYINWCAQMAESLNIGVP 213

[Close]
BLAST of MELO3C005431.2 vs. NCBI nr
Match: XP_023521639.1 (beta-galactosidase-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPII+  IENEYGNV TPYGD GK   N      ESLNIGVP
Sbjct: 156 KIVNMCKQANLFATQGGPIIIAQIENEYGNVMTPYGDAGKTYINWCAQMAESLNIGVP 213

[Close]
BLAST of MELO3C005431.2 vs. NCBI nr
Match: XP_023516817.1 (beta-galactosidase 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPII+  IENEYGNV TPYGD GK   N      ESLNIGVP
Sbjct: 156 KIVNMCKQANLFATQGGPIIIAQIENEYGNVMTPYGDAGKTYINWCAQMAESLNIGVP 213

[Close]
BLAST of MELO3C005431.2 vs. NCBI nr
Match: XP_008444022.1 (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLNIGVP
Sbjct: 156 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGNAGKTYINWCAQMAESLNIGVP 213

[Close]
BLAST of MELO3C005431.2 vs. NCBI nr
Match: KGN58141.1 (hypothetical protein Csa_3G550690 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLNIG+P
Sbjct: 157 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGEAGKTYINWCAQMAESLNIGIP 214

[Close]
BLAST of MELO3C005431.2 vs. TAIR10
Match: AT5G20710.1 (beta-galactosidase 7)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-10
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKV----CSN-GESLNIGVP 56
           KI+ M K+  LFA QGGPIIL  IENEYGNV + YG  GK     C+N   SL+IGVP
Sbjct: 158 KIVKMMKEEKLFASQGGPIILAQIENEYGNVISSYGAEGKAYIDWCANMANSLDIGVP 215

[Close]
BLAST of MELO3C005431.2 vs. TAIR10
Match: AT1G31740.1 (beta-galactosidase 15)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-10
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 4   IMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKV----CSN-GESLNIGVP 56
           I+ M K+  LFA QGGPIIL  IENEYGNV   YG+ GK     C+N   SL++GVP
Sbjct: 176 IVEMVKKEKLFASQGGPIILAQIENEYGNVIGSYGEAGKAYIQWCANMANSLDVGVP 232

[Close]
BLAST of MELO3C005431.2 vs. TAIR10
Match: AT2G28470.1 (beta-galactosidase 8)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-08
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGK-----VCSNGESLNIGVP 56
           KI+++ KQ  L+A QGGPIIL  IENEYGN+ + YG   K       S   SL+ GVP
Sbjct: 162 KIVDLMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAAKSYIKWSASMALSLDTGVP 219

[Close]
BLAST of MELO3C005431.2 vs. TAIR10
Match: AT5G63810.1 (beta-galactosidase 10)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-08
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 4   IMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGK-----VCSNGESLNIGVP 56
           I+N+ KQ  LFA QGGPIIL  +ENEYG     YG+ GK       S   S NIGVP
Sbjct: 163 IVNLLKQEKLFAPQGGPIILSQVENEYGYYEKDYGEGGKRYAQWSASMAVSQNIGVP 219

[Close]
BLAST of MELO3C005431.2 vs. TAIR10
Match: AT2G32810.1 (beta galactosidase 9)

HSP 1 Score: 52.4 bits (124), Expect = 1.0e-07
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGK-----VCSNGESLNIGVP 56
           KI+++ ++A LF  QGGPII++ IENEYG+V   YG  GK       S    L  GVP
Sbjct: 168 KIVDLMREAKLFCWQGGPIIMLQIENEYGDVEKSYGQKGKDYVKWAASMALGLGAGVP 225

[Close]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match: sp|P49676|BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-10
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKV----CSN-GESLNIGVP 56
           KI+NM K+ +LFA QGGPIIL  IENEYGNV + YG  GK     C+N   SL+IGVP
Sbjct: 157 KIVNMMKEESLFASQGGPIILAQIENEYGNVISSYGAEGKAYIDWCANMANSLDIGVP 214

[Close]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match: sp|Q9SCV5|BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-09
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKV----CSN-GESLNIGVP 56
           KI+ M K+  LFA QGGPIIL  IENEYGNV + YG  GK     C+N   SL+IGVP
Sbjct: 158 KIVKMMKEEKLFASQGGPIILAQIENEYGNVISSYGAEGKAYIDWCANMANSLDIGVP 215

[Close]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match: sp|Q9C6W4|BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana OX=3702 GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-09
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 4   IMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKV----CSN-GESLNIGVP 56
           I+ M K+  LFA QGGPIIL  IENEYGNV   YG+ GK     C+N   SL++GVP
Sbjct: 153 IVEMVKKEKLFASQGGPIILAQIENEYGNVIGSYGEAGKAYIQWCANMANSLDVGVP 209

[Close]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match: sp|Q9SCV4|BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-07
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGK-----VCSNGESLNIGVP 56
           KI+++ KQ  L+A QGGPIIL  IENEYGN+ + YG   K       S   SL+ GVP
Sbjct: 162 KIVDLMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAAKSYIKWSASMALSLDTGVP 219

[Close]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match: sp|Q9FN08|BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana OX=3702 GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-07
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 4   IMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGK-----VCSNGESLNIGVP 56
           I+N+ KQ  LFA QGGPIIL  +ENEYG     YG+ GK       S   S NIGVP
Sbjct: 163 IVNLLKQEKLFAPQGGPIILSQVENEYGYYEKDYGEGGKRYAQWSASMAVSQNIGVP 219

[Close]
BLAST of MELO3C005431.2 vs. TrEMBL
Match: tr|A0A1S3BA81|A0A1S3BA81_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103487469 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLNIGVP
Sbjct: 156 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGNAGKTYINWCAQMAESLNIGVP 213

[Close]
BLAST of MELO3C005431.2 vs. TrEMBL
Match: tr|A0A0A0LDH9|A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLNIG+P
Sbjct: 157 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGEAGKTYINWCAQMAESLNIGIP 214

[Close]
BLAST of MELO3C005431.2 vs. TrEMBL
Match: tr|A0A1S3CP45|A0A1S3CP45_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502650 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLN+GVP
Sbjct: 156 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGNAGKTYINWCAQMAESLNVGVP 213

[Close]
BLAST of MELO3C005431.2 vs. TrEMBL
Match: tr|A0A1S3C8Z9|A0A1S3C8Z9_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103498345 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ESLN+GVP
Sbjct: 156 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGNAGKTYINWCAQMAESLNVGVP 213

[Close]
BLAST of MELO3C005431.2 vs. TrEMBL
Match: tr|A0A0A0LXX7|A0A0A0LXX7_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G643050 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 40/58 (68.97%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 3   KIMNMYKQANLFALQGGPIILVPIENEYGNVTTPYGDVGKVCSN-----GESLNIGVP 56
           KI+NM KQANLFA QGGPIIL  IENEYGNV TPYG+ GK   N      ES NIGVP
Sbjct: 135 KIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGNAGKAYINWCAQMAESFNIGVP 192

The following BLAST results are available for this feature:
BLAST of MELO3C005431.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960835.12.0e-1270.69beta-galactosidase 7-like [Cucurbita moschata][more]
XP_023521639.12.0e-1270.69beta-galactosidase-like, partial [Cucurbita pepo subsp. pepo][more]
XP_023516817.12.0e-1270.69beta-galactosidase 7-like [Cucurbita pepo subsp. pepo][more]
XP_008444022.15.8e-1270.69PREDICTED: beta-galactosidase-like [Cucumis melo][more]
KGN58141.15.8e-1268.97hypothetical protein Csa_3G550690 [Cucumis sativus][more]
BLAST of MELO3C005431.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20710.11.0e-1058.62beta-galactosidase 7[more]
AT1G31740.12.9e-1056.14beta-galactosidase 15[more]
AT2G28470.13.6e-0850.00beta-galactosidase 8[more]
AT5G63810.14.7e-0852.63beta-galactosidase 10[more]
AT2G32810.11.0e-0746.55beta galactosidase 9[more]
BLAST of MELO3C005431.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49676|BGAL_BRAOL2.8e-1060.34Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1[more]
sp|Q9SCV5|BGAL7_ARATH1.8e-0958.62Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2[more]
sp|Q9C6W4|BGA15_ARATH5.3e-0956.14Beta-galactosidase 15 OS=Arabidopsis thaliana OX=3702 GN=BGAL15 PE=2 SV=1[more]
sp|Q9SCV4|BGAL8_ARATH6.5e-0750.00Beta-galactosidase 8 OS=Arabidopsis thaliana OX=3702 GN=BGAL8 PE=2 SV=2[more]
sp|Q9FN08|BGA10_ARATH8.5e-0752.63Beta-galactosidase 10 OS=Arabidopsis thaliana OX=3702 GN=BGAL10 PE=2 SV=1[more]
BLAST of MELO3C005431.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BA81|A0A1S3BA81_CUCME3.8e-1270.69Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103487469 PE=3 SV=1[more]
tr|A0A0A0LDH9|A0A0A0LDH9_CUCSA3.8e-1268.97Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G550690 PE=3 SV=1[more]
tr|A0A1S3CP45|A0A1S3CP45_CUCME5.0e-1268.97Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502650 PE=3 SV=1[more]
tr|A0A1S3C8Z9|A0A1S3C8Z9_CUCME5.0e-1268.97Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103498345 PE=3 SV=1[more]
tr|A0A0A0LXX7|A0A0A0LXX7_CUCSA1.1e-1168.97Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G643050 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: INTERPRO
TermDefinition
IPR001944Glycoside_Hdrlase_35
IPR031330Gly_Hdrlase_35_cat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005431.2.1MELO3C005431.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031330Glycoside hydrolase 35, catalytic domainPFAMPF01301Glyco_hydro_35coord: 4..38
e-value: 1.7E-5
score: 24.5
IPR001944Glycoside hydrolase, family 35PANTHERPTHR23421BETA-GALACTOSIDASE RELATEDcoord: 3..43
NoneNo IPR availablePANTHERPTHR23421:SF80SUBFAMILY NOT NAMEDcoord: 3..43

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C005431.2Cla97C01G005260Watermelon (97103) v2medwmbB007
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005431.2Cucumber (Gy14) v2cgybmedB301
MELO3C005431.2Cucumber (Gy14) v1cgymedB204
MELO3C005431.2Cucurbita maxima (Rimu)cmamedB291
MELO3C005431.2Cucurbita maxima (Rimu)cmamedB610
MELO3C005431.2Cucurbita moschata (Rifu)cmomedB277
MELO3C005431.2Cucurbita moschata (Rifu)cmomedB597
MELO3C005431.2Cucurbita pepo (Zucchini)cpemedB174
MELO3C005431.2Cucurbita pepo (Zucchini)cpemedB775
MELO3C005431.2Wild cucumber (PI 183967)cpimedB341
MELO3C005431.2Cucumber (Chinese Long) v2cumedB339
MELO3C005431.2Bottle gourd (USVL1VR-Ls)lsimedB013
MELO3C005431.2Bottle gourd (USVL1VR-Ls)lsimedB356
MELO3C005431.2Watermelon (Charleston Gray)medwcgB017
MELO3C005431.2Watermelon (97103) v1medwmB021
MELO3C005431.2Watermelon (97103) v1medwmB022
MELO3C005431.2Silver-seed gourdcarmedB0718
MELO3C005431.2Silver-seed gourdcarmedB1014
MELO3C005431.2Cucumber (Chinese Long) v3cucmedB352
MELO3C005431.2Wax gourdmedwgoB006
MELO3C005431.2Wax gourdmedwgoB014
MELO3C005431.2Wax gourdmedwgoB038