MELO3C005365 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005365
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Valine--tRNA ligase
Location	chr9 : 19778381 .. 19779877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCAATACAATCCGAGTGCCGTGGAGAAGTCGTAAGTGTGGTTTGTTAATTTTCTATGACTTCCCATGGCTTGATTAATTGTTTATTATTTGATGGATGCAATTTGTTAAATTCTTGTTTTGTATTTAGGTGGTATGAGTGGTGGGAAAAATCAGGGTATTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAATTGTGAGATTCTTTTGTGCTGGAAGTTTATAACATAAGAACGTCCTTTTGCATATTTCTTAGCGTTTGTGTGATAGGGGACAAAATTCCATATTACTTAAAAGTGTTTAGTTAAGATTTTTTTTTTTTTCCTTTGACCATATGATGGATCTTCCCTTCATATGTTGGACCAAAAGTCTATGGTTAAAATCTGCGTTAGTGAATACCGTATTCATGACTGTTTTTTGGTTATTTTTGTCATTTATTTTTTGTATGTTCTACTGCACGAATATTGTAGTATGCACTCCTACATGCTACCGCCACATTCTTCCACGAAATTATGTGACTTGACTCCATGAATTAGCACATTTACATTACTTAGATTTAAATATGTTTATCGATTAAATCTTAGTGTAGTCAAACTAAATTTCAATGGTCTGTTTTATTTTTTTTTAATTTTCAGGTGCTGCCCCCACCTAACGTGACTGGGGCCCTCCACATAGGTCATGCTCTTACTGCTGCAATCGAGGTGCTGTTGGATGCATATACAAATATTTTCTTCCTGCTGTTTTATACAACCGTGAGAATTTCTTTTTTATTCCAAGTGACCTTTTTGATGTTATGCAGGATGCCATTATTCGATGGCGGAGAATGTCTGGATTCAACACCTTGTGGGTTCCAGGGACAGACCATGCTGGGATAGCTACTCAGGTTTTCACCTTTTTTGTTTTACTTTTCATTTCCTTTTACATTGATGGGATGGGTCTTGCTTTAGTAAGCATGACAATAAAATTTTTTCCTCAATGGTTAAATGAATTTATTAATTACTTTTTTGAACAACTATGATTGAATTTATAAATTAGATAAAGGTTTATGCTTATAGGGCTTCTTAGCAAGAGCACTTTAAGTGATGGTGATGTAATGGGCCATGCCCTTGGGTTTTCTACTGCATCATGTATGCTTTACATGATCCGTTAGGGAAGGTGAAGCTTATTATCCAAGGAAAGAACCACAACCATGCATCTGCTACTTATCATTATCCAGAATGGCACATCTCACTTTTCGTGTGCTTTTGTAGATATGTTGATCAGTAAACTATAATCTTGCTGTAACAGTTGGTCTTTTCTTGTCTTGATTTTCATCTGCTTACACATATGGCAGTTACCTAAAGTTTCTTTTTTTCCTGTTATAGGTGGTTGTAGAAAAGAAGATAATGCGAGAAAGGAATTTAACCAGGCATGATATTGGTCGGGAGAAATTTATTTCTGAAGTTAGTTTGACCTCTACATTAACTCCTCTTTCTTTGGTTTGA

mRNA sequence

ATGGCAAAGCAATACAATCCGAGTGCCGTGGAGAAGTCGTGGTATGAGTGGTGGGAAAAATCAGGGTATTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAATTGTGCTGCCCCCACCTAACGTGACTGGGGCCCTCCACATAGGTCATGCTCTTACTGCTGCAATCGAGGATGCCATTATTCGATGGCGGAGAATGTCTGGATTCAACACCTTGTGGGTTCCAGGGACAGACCATGCTGGGATAGCTACTCAGGTGGTTGTAGAAAAGAAGATAATGCGAGAAAGGAATTTAACCAGGCATGATATTGGTCGGGAGAAATTTATTTCTGAAGTTAGTTTGACCTCTACATTAACTCCTCTTTCTTTGGTTTGA

Coding sequence (CDS)

ATGGCAAAGCAATACAATCCGAGTGCCGTGGAGAAGTCGTGGTATGAGTGGTGGGAAAAATCAGGGTATTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAATTGTGCTGCCCCCACCTAACGTGACTGGGGCCCTCCACATAGGTCATGCTCTTACTGCTGCAATCGAGGATGCCATTATTCGATGGCGGAGAATGTCTGGATTCAACACCTTGTGGGTTCCAGGGACAGACCATGCTGGGATAGCTACTCAGGTGGTTGTAGAAAAGAAGATAATGCGAGAAAGGAATTTAACCAGGCATGATATTGGTCGGGAGAAATTTATTTCTGAAGTTAGTTTGACCTCTACATTAACTCCTCTTTCTTTGGTTTGA

Protein sequence

MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDAIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEVSLTSTLTPLSLV*

Homology

[Close]

BLAST of MELO3C005365 vs. Swiss-Prot
Match: SYVM1_ARATH (Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana GN=TWN2 PE=2 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-52
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQY+P+ VEKSWY WWEKS  F ADAKSSKPPFVIVLPPPNVTGALHIGHALT+AIED
Sbjct: 136 MAKQYSPATVEKSWYAWWEKSDLFKADAKSSKPPFVIVLPPPNVTGALHIGHALTSAIED 195

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRW+RMSG+N LWVPG DHAGIATQVVVEKKIMR+R +TRHD+GRE+F+ EV
Sbjct: 196 TIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKIMRDRGMTRHDVGREEFVKEV 249

[Close]

BLAST of MELO3C005365 vs. Swiss-Prot
Match: SYV_BDEBA (Valine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=valS PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-39
Identity = 70/114 (61.40%), Postives = 93/114 (81.58%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           ++ +YNP+ VE   YEWWEK+GYF A  +S+KPPF I+LPPPNVTG LH+GHAL   I+D
Sbjct: 7   LSDRYNPADVESRTYEWWEKNGYFKAQDQSTKPPFSIILPPPNVTGFLHMGHALDHTIQD 66

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            +IRW+RM+G+NT+W+PGTDHAGIATQ VVE+++ ++  +TRHD+GREKF+ +V
Sbjct: 67  MMIRWKRMNGYNTMWLPGTDHAGIATQSVVERELKKD-GVTRHDLGREKFVEKV 119

[Close]

BLAST of MELO3C005365 vs. Swiss-Prot
Match: SYVC_TAKRU (Valine--tRNA ligase OS=Takifugu rubripes GN=vars PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1


Query: 5   YNPSAVEKSWYEWWEKSGYFVAD-------AKSSKPPFVIVLPPPNVTGALHIGHALTAA 64
           Y+P  VE +WY WWEK G+F  +        ++ +  F++ +PPPNVTG+LH+GHALT A
Sbjct: 249 YSPQYVEAAWYPWWEKQGFFKPEFGRKSIGEQNPRGIFMMCIPPPNVTGSLHLGHALTNA 308

Query: 65  IEDAIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           I+D + RW RM G  TLW PG DHAGIATQVVVEKK+MRE+  +RHD+GREKFI EV
Sbjct: 309 IQDTLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLMREKGTSRHDLGREKFIEEV 365

[Close]

BLAST of MELO3C005365 vs. Swiss-Prot
Match: SYV_GEOSL (Valine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=valS PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-35
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           +AK Y P+AVE+ WYE WE+ GYF A+  S KP + IV+PPPNVTGALH+GHAL   ++D
Sbjct: 6   LAKVYEPTAVERKWYETWEQEGYFRANPDSGKPSYSIVIPPPNVTGALHMGHALNNTLQD 65

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            + RW+RM+G+  LW+PGTDHAGIATQ VVE+++  E   +RH++GRE FI  V
Sbjct: 66  ILCRWKRMNGYEVLWMPGTDHAGIATQNVVERQLAGE-GTSRHELGREAFIERV 118

[Close]

BLAST of MELO3C005365 vs. Swiss-Prot
Match: SYVC_DICDI (Probable valine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=valS1 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-35
Identity = 69/121 (57.02%), Postives = 87/121 (71.90%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPP-------FVIVLPPPNVTGALHIGHA 60
           +   Y+P+AVE  WY++W  +GYF  + +    P       FVIV+PPPNVTG+LH+GHA
Sbjct: 103 LLSSYHPTAVESIWYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHA 162

Query: 61  LTAAIEDAIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISE 115
           LT +I+DA++R+ RM G   LWVPGTDHAGIATQVVVEKKI +E  +TRHD+GRE FI +
Sbjct: 163 LTNSIQDAVVRYHRMKGEVCLWVPGTDHAGIATQVVVEKKIWKENKITRHDLGREGFIKK 222

[Close]

BLAST of MELO3C005365 vs. TrEMBL
Match: A0A0A0KPW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174580 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 66  MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 125

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           AIIRWRRMSG+NTLWVPGTDHAGIATQVVVEKKIMRERNLTRHD+GREKFISEV
Sbjct: 126 AIIRWRRMSGYNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDLGREKFISEV 179

[Close]

BLAST of MELO3C005365 vs. TrEMBL
Match: A0A067K8S9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13191 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-55
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNP+AVE SWY WWEKSGYF ADAKSSKPPF IVLPPPNVTGALHIGHALTAA+ED
Sbjct: 90  MAKQYNPTAVEGSWYAWWEKSGYFTADAKSSKPPFTIVLPPPNVTGALHIGHALTAAVED 149

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRWRRMSG+NTLWVPG DHAGIATQVVVEKK+MRER+LTRHDIGREKF+SEV
Sbjct: 150 TIIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREKFVSEV 203

[Close]

BLAST of MELO3C005365 vs. TrEMBL
Match: M5X7F9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026682mg PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-54
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAK Y+PSAVEKSWYEWWEK+G+FVADA SSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 80  MAKGYSPSAVEKSWYEWWEKTGFFVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIED 139

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRWRRMSG+NTLWVPG DHAGIATQVVVEKK+MRE  LTRHDIGREKF+SEV
Sbjct: 140 TIIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKLMRESQLTRHDIGREKFVSEV 193

[Close]

BLAST of MELO3C005365 vs. TrEMBL
Match: J3LRT4_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-54
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNP+AVEKSWY WWE SGYF ADA SSKPPFVIVLPPPNVTGALHIGHALT AIED
Sbjct: 92  MAKQYNPTAVEKSWYPWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIED 151

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           AIIRWRRMSG+N LWVPG DHAGIATQVVVEKKIMRERNLTRHDIGRE F+SEV
Sbjct: 152 AIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKIMRERNLTRHDIGREGFVSEV 205

[Close]

BLAST of MELO3C005365 vs. TrEMBL
Match: A0A151U9X6_CAJCA (Valyl-tRNA synthetase OS=Cajanus cajan GN=KK1_020304 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.9e-54
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQY+P+AVEKSWYEWWEKS +FVADA SSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 91  MAKQYSPTAVEKSWYEWWEKSSFFVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIED 150

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            +IRWRRMSG+N LWVPG DHAGIATQVVVEKKIMRER LTRHD+GREKF+SEV
Sbjct: 151 TMIRWRRMSGYNALWVPGMDHAGIATQVVVEKKIMRERKLTRHDLGREKFVSEV 204

[Close]

BLAST of MELO3C005365 vs. TAIR10
Match: AT1G14610.1 (AT1G14610.1 valyl-tRNA synthetase / valine--tRNA ligase (VALRS))

HSP 1 Score: 207.2 bits (526), Expect = 5.9e-54
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQY+P+ VEKSWY WWEKS  F ADAKSSKPPFVIVLPPPNVTGALHIGHALT+AIED
Sbjct: 136 MAKQYSPATVEKSWYAWWEKSDLFKADAKSSKPPFVIVLPPPNVTGALHIGHALTSAIED 195

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRW+RMSG+N LWVPG DHAGIATQVVVEKKIMR+R +TRHD+GRE+F+ EV
Sbjct: 196 TIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKIMRDRGMTRHDVGREEFVKEV 249

[Close]

BLAST of MELO3C005365 vs. TAIR10
Match: AT5G16715.1 (AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 2   AKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDA 61
           +K ++ S+ EK  Y+WWE  GYF  +      PFVI +PPPNVTG+LH+GHA+   +ED 
Sbjct: 70  SKTFDFSSEEKI-YKWWESQGYFKPNFDQGGSPFVIPMPPPNVTGSLHMGHAMFVTLEDI 129

Query: 62  IIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           ++R+ RM+G  TLW+PGTDHAGIATQ+VVEK +  E  + R D+GR++F   V
Sbjct: 130 MVRYNRMNGRPTLWLPGTDHAGIATQLVVEKMLASE-GIKRVDLGRDEFTKRV 180

[Close]

BLAST of MELO3C005365 vs. NCBI nr
Match: gi|659073011|ref|XP_008467213.1| (PREDICTED: valine--tRNA ligase [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 4.0e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 85  MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 144

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV
Sbjct: 145 AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 198

[Close]

BLAST of MELO3C005365 vs. NCBI nr
Match: gi|449451751|ref|XP_004143624.1| (PREDICTED: valine--tRNA ligase [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 85  MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 144

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           AIIRWRRMSG+NTLWVPGTDHAGIATQVVVEKKIMRERNLTRHD+GREKFISEV
Sbjct: 145 AIIRWRRMSGYNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDLGREKFISEV 198

[Close]

BLAST of MELO3C005365 vs. NCBI nr
Match: gi|700195255|gb|KGN50432.1| (hypothetical protein Csa_5G174580 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED
Sbjct: 66  MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 125

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
           AIIRWRRMSG+NTLWVPGTDHAGIATQVVVEKKIMRERNLTRHD+GREKFISEV
Sbjct: 126 AIIRWRRMSGYNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDLGREKFISEV 179

[Close]

BLAST of MELO3C005365 vs. NCBI nr
Match: gi|802639743|ref|XP_012078515.1| (PREDICTED: valine--tRNA ligase [Jatropha curcas])

HSP 1 Score: 221.9 bits (564), Expect = 6.5e-55
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAKQYNP+AVE SWY WWEKSGYF ADAKSSKPPF IVLPPPNVTGALHIGHALTAA+ED
Sbjct: 90  MAKQYNPTAVEGSWYAWWEKSGYFTADAKSSKPPFTIVLPPPNVTGALHIGHALTAAVED 149

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRWRRMSG+NTLWVPG DHAGIATQVVVEKK+MRER+LTRHDIGREKF+SEV
Sbjct: 150 TIIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREKFVSEV 203

[Close]

BLAST of MELO3C005365 vs. NCBI nr
Match: gi|657969580|ref|XP_008376514.1| (PREDICTED: valine--tRNA ligase-like [Malus domestica])

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 100/114 (87.72%), Postives = 109/114 (95.61%), Query Frame = 1


Query: 1   MAKQYNPSAVEKSWYEWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIED 60
           MAK+Y+PS VEKSWYEWWEK+G+FVADAKSSKPPFVIVLPPPNVTGALHIGHALTAA+ED
Sbjct: 138 MAKEYSPSVVEKSWYEWWEKTGFFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAVED 197

Query: 61  AIIRWRRMSGFNTLWVPGTDHAGIATQVVVEKKIMRERNLTRHDIGREKFISEV 115
            IIRWRRMSG+NTLWVPG DHAGIATQVVVEKK+MRE  LTRHDIGREKF++EV
Sbjct: 198 TIIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKLMRESKLTRHDIGREKFVAEV 251

The following BLAST results are available for this feature:

BLAST of MELO3C005365 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYVM1_ARATH	1.0e-52	82.46	Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana GN=TWN2 PE=2 SV=2	[more]
SYV_BDEBA	1.7e-39	61.40	Valine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701...	[more]
SYVC_TAKRU	1.5e-35	58.12	Valine--tRNA ligase OS=Takifugu rubripes GN=vars PE=3 SV=1	[more]
SYV_GEOSL	2.6e-35	57.89	Valine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 /...	[more]
SYVC_DICDI	4.4e-35	57.02	Probable valine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=valS1 P...	[more]

BLAST of MELO3C005365 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPW4_CUCSA	1.0e-59	98.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174580 PE=3 SV=1	[more]
A0A067K8S9_JATCU	4.6e-55	89.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13191 PE=3 SV=1	[more]
M5X7F9_PRUPE	3.0e-54	89.47	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026682mg PE=3 S...	[more]
J3LRT4_ORYBR	3.0e-54	90.35	Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1	[more]
A0A151U9X6_CAJCA	3.9e-54	88.60	Valyl-tRNA synthetase OS=Cajanus cajan GN=KK1_020304 PE=3 SV=1	[more]

BLAST of MELO3C005365 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14610.1	5.9e-54	82.46	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)	[more]
AT5G16715.1	1.9e-28	51.33	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide bi...	[more]

BLAST of MELO3C005365 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073011\|ref\|XP_008467213.1\|	4.0e-60	100.00	PREDICTED: valine--tRNA ligase [Cucumis melo]	[more]
gi\|449451751\|ref\|XP_004143624.1\|	1.5e-59	98.25	PREDICTED: valine--tRNA ligase [Cucumis sativus]	[more]
gi\|700195255\|gb\|KGN50432.1\|	1.5e-59	98.25	hypothetical protein Csa_5G174580 [Cucumis sativus]	[more]
gi\|802639743\|ref\|XP_012078515.1\|	6.5e-55	89.47	PREDICTED: valine--tRNA ligase [Jatropha curcas]	[more]
gi\|657969580\|ref\|XP_008376514.1\|	3.2e-54	87.72	PREDICTED: valine--tRNA ligase-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001412	aa-tRNA-synth_I_CS
IPR002300	aa-tRNA-synth_Ia
IPR002303	Valyl-tRNA_ligase
IPR014729	Rossmann-like_a/b/a_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0004812	aminoacyl-tRNA ligase activity
GO:0005524	ATP binding
GO:0004832	valine-tRNA ligase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006418	tRNA aminoacylation for protein translation
GO:0006438	valyl-tRNA aminoacylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006438	valyl-tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004832	valine-tRNA ligase activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44291	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005365T1	MELO3C005365T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44291	MU44291	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site	PROSITE	PS00178	AA_TRNA_LIGASE_I	coord: 42..53 scor
IPR002300	Aminoacyl-tRNA synthetase, class Ia	PFAM	PF00133	tRNA-synt_1	coord: 14..114 score: 2.0
IPR002303	Valine-tRNA ligase	PANTHER	PTHR11946:SF5	VALYL-TRNA SYNTHETASE, ISOFORM A	coord: 1..114 score: 1.7
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 1..114 score: 1.2
None	No IPR available	PANTHER	PTHR11946	ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES	coord: 1..114 score: 1.7
None	No IPR available	unknown	SSF52374	Nucleotidylyl transferase	coord: 1..112 score: 3.94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005365	Csa5G174580	Cucumber (Chinese Long) v2	cumeB359
MELO3C005365	Cla002329	Watermelon (97103) v1	mewmB031
MELO3C005365	ClCG01G005680	Watermelon (Charleston Gray)	mewcgB019
MELO3C005365	Cla97C01G005930	Watermelon (97103) v2	mewmbB009
MELO3C005365	CSPI05G08490	Wild cucumber (PI 183967)	cpimeB351
MELO3C005365	Cucsa.166330	Cucumber (Gy14) v1	cgymeB288
MELO3C005365	CmaCh02G010480	Cucurbita maxima (Rimu)	cmameB531
MELO3C005365	CmoCh02G010620	Cucurbita moschata (Rifu)	cmomeB520
MELO3C005365	Lsi09G005970	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005365	Cp4.1LG05g06610	Cucurbita pepo (Zucchini)	cpemeB648
MELO3C005365	CsGy5G005880	Cucumber (Gy14) v2	cgybmeB301
MELO3C005365	Carg08430	Silver-seed gourd	carmeB0705
MELO3C005365	CsaV3_5G005900	Cucumber (Chinese Long) v3	cucmeB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005365	Wax gourd	mewgoB012
MELO3C005365	Cucurbita maxima (Rimu)	cmameB256
MELO3C005365	Cucurbita moschata (Rifu)	cmomeB244
MELO3C005365	Cucurbita pepo (Zucchini)	cpemeB147
MELO3C005365	Silver-seed gourd	carmeB0735