MELO3C005351.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005351.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein IDA-LIKE 1
Location	chr09 : 20808517 .. 20809058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCATTCCCCACTTTTCCCTCAACAAAAAAATCCCCAATTTTCTCTCATATCTCATGGCCTCCTCCTCCTCCATCTTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTAATTTCACCACCGCACGCCCATTCCCGTCAACCACAATGGCGGAGCCGTTGTCTCGCAATACCCACCTCACCACCGCCTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCGAAAAGACACAACTCGGTCGTCAACTCAGCCCCACTCAACTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTCGTCCTTAATTTTGGAGCATTTTTTTCCCCCAACAACGCCTGTGATCTAATCTAAGATCCTAATTGCAATCTACAGGCTCCTTTTCTTTTCTCTTTTCTCTTTTTTAGAAAAAAAAAAAGAAACATATATATATTTATATGTAGAATTATAGATATAGTGTGTGTATACAAAATTCCATTTGTTTATATGTGAAAGAGGTTCTTAATTTTCTTTC

mRNA sequence

TACCATTCCCCACTTTTCCCTCAACAAAAAAATCCCCAATTTTCTCTCATATCTCATGGCCTCCTCCTCCTCCATCTTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTAATTTCACCACCGCACGCCCATTCCCGTCAACCACAATGGCGGAGCCGTTGTCTCGCAATACCCACCTCACCACCGCCTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCGAAAAGACACAACTCGGTCGTCAACTCAGCCCCACTCAACTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTCGTCCTTAATTTTGGAGCATTTTTTTCCCCCAACAACGCCTGTGATCTAATCTAAGATCCTAATTGCAATCTACAGGCTCCTTTTCTTTTCTCTTTTCTCTTTTTTAGAAAAAAAAAAAGAAACATATATATATTTATATGTAGAATTATAGATATAGTGTGTGTATACAAAATTCCATTTGTTTATATGTGAAAGAGGTTCTTAATTTTCTTTC

Coding sequence (CDS)

ATGGCCTCCTCCTCCTCCATCTTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTAATTTCACCACCGCACGCCCATTCCCGTCAACCACAATGGCGGAGCCGTTGTCTCGCAATACCCACCTCACCACCGCCTTCCGCTTCAACCATCAAATCTTCAGCTTCCTTCCCAAAGGCCCCATTCCGCCTTCCGCTCCTTCGAAAAGACACAACTCGGTCGTCAACTCAGCCCCACTCAACTGA

Protein sequence

MASSSSIFFIFLLILPLPNFTTARPFPSTTMAEPLSRNTHLTTAFRFNHQIFSFLPKGPIPPSAPSKRHNSVVNSAPLN

Homology

[Close]

BLAST of MELO3C005351.2 vs. NCBI nr
Match: KGN51548.1 (hypothetical protein Csa_5G577390 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.5e-25
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 3  SSSSIFFIFLLILPLPNFTTARXXXXXXXXXXXSRNTHLTTAFRFNHQIFSFLPKGPIPP 62
          +SSSIFFI LLILPLPNFTTAR           S NTHLTTAFRFNHQIFSFLPKGPIPP
Sbjct: 2  ASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIPP 61

Query: 63 SAPSKRHNSVVNSAPLN 80
          SAPSKRHNS++NSAPLN
Sbjct: 62 SAPSKRHNSLINSAPLN 78

[Close]

BLAST of MELO3C005351.2 vs. NCBI nr
Match: PRQ40450.1 (hypothetical protein RchiOBHm_Chr4g0436131 [Rosa chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 43  TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSVVNSAPLN 80
           TAFRF  +IFSF PKG P+PPS PSKRHNSVVNS P N
Sbjct: 64  TAFRFRGEIFSFFPKGSPVPPSGPSKRHNSVVNSTPKN 101

[Close]

BLAST of MELO3C005351.2 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 43 TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSVVNSAPLN 80
          TAFR+  Q FSFLPKG PIPPS PS RHNSVV+S P N
Sbjct: 50 TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of MELO3C005351.2 vs. NCBI nr
Match: KYP39168.1 (Protein IDA [Cajanus cajan])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 37 RNTHLTTAFRFNHQIFSFLPKGPIPPSAPSKRHNSVVNSAPLN 80
          +  H   +F +   +F+F PKGP+PPS PSKRHN+VV+S P N
Sbjct: 54 KGKHNKPSFPYQSMVFNFFPKGPVPPSGPSKRHNAVVDSTPPN 96

[Close]

BLAST of MELO3C005351.2 vs. NCBI nr
Match: XP_021910044.1 (protein IDA-like [Carica papaya])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 43  TAFRFNHQIFSFLPKGPIPPSAPSKRHNSVVNSAPLN 80
           T+F +  Q+F+FLPKG +PPS PSKRHNS+++S PL+
Sbjct: 64  TSFVYKEQLFNFLPKGLVPPSGPSKRHNSLIHSTPLH 100

[Close]

BLAST of MELO3C005351.2 vs. TAIR10
Match: AT1G68765.1 (Putative membrane lipoprotein)

HSP 1 Score: 49.7 bits (117), Expect = 9.8e-07
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 48 NHQIFSFLPKG-PIPPSAPSKRHNSVVNSAP 78
          N  IF +LPKG PIPPSAPSKRHNS VNS P
Sbjct: 46 NSHIFGYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of MELO3C005351.2 vs. Swiss-Prot
Match: sp|Q8LAD7|IDA_ARATH (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-05
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 48 NHQIFSFLPKG-PIPPSAPSKRHNSVVNSAP 78
          N  IF +LPKG PIPPSAPSKRHNS VNS P
Sbjct: 46 NSHIFGYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of MELO3C005351.2 vs. TrEMBL
Match: tr|A0A0A0KPP8|A0A0A0KPP8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-25
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 3  SSSSIFFIFLLILPLPNFTTARXXXXXXXXXXXSRNTHLTTAFRFNHQIFSFLPKGPIPP 62
          +SSSIFFI LLILPLPNFTTAR           S NTHLTTAFRFNHQIFSFLPKGPIPP
Sbjct: 2  ASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKGPIPP 61

Query: 63 SAPSKRHNSVVNSAPLN 80
          SAPSKRHNS++NSAPLN
Sbjct: 62 SAPSKRHNSLINSAPLN 78

[Close]

BLAST of MELO3C005351.2 vs. TrEMBL
Match: tr|A0A2P6R1Y4|A0A2P6R1Y4_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 43  TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSVVNSAPLN 80
           TAFRF  +IFSF PKG P+PPS PSKRHNSVVNS P N
Sbjct: 64  TAFRFRGEIFSFFPKGSPVPPSGPSKRHNSVVNSTPKN 101

[Close]

BLAST of MELO3C005351.2 vs. TrEMBL
Match: tr|A0A0A0KR07|A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 43 TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSVVNSAPLN 80
          TAFR+  Q FSFLPKG PIPPS PS RHNSVV+S P N
Sbjct: 50 TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of MELO3C005351.2 vs. TrEMBL
Match: tr|A0A151R950|A0A151R950_CAJCA (Protein IDA OS=Cajanus cajan OX=3821 GN=KK1_039532 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-05
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 37 RNTHLTTAFRFNHQIFSFLPKGPIPPSAPSKRHNSVVNSAPLN 80
          +  H   +F +   +F+F PKGP+PPS PSKRHN+VV+S P N
Sbjct: 54 KGKHNKPSFPYQSMVFNFFPKGPVPPSGPSKRHNAVVDSTPPN 96

[Close]

BLAST of MELO3C005351.2 vs. TrEMBL
Match: tr|M5XH24|M5XH24_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017234mg PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 43 TAFRFNHQIFSFLPKG-PIPPSAPSKRHNSVVNSAP 78
          T F++  Q+FSF PKG PIPPS PSKRHNSVV+S P
Sbjct: 47 TGFQYRGQVFSFFPKGTPIPPSGPSKRHNSVVDSTP 82

The following BLAST results are available for this feature:

BLAST of MELO3C005351.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51548.1	6.5e-25	79.22	hypothetical protein Csa_5G577390 [Cucumis sativus]	[more]
PRQ40450.1	1.8e-06	76.32	hypothetical protein RchiOBHm_Chr4g0436131 [Rosa chinensis]	[more]
KGN52035.1	5.7e-05	73.68	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
KYP39168.1	1.3e-04	51.16	Protein IDA [Cajanus cajan]	[more]
XP_021910044.1	1.3e-04	59.46	protein IDA-like [Carica papaya]	[more]

BLAST of MELO3C005351.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68765.1	9.8e-07	77.42	Putative membrane lipoprotein	[more]

BLAST of MELO3C005351.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LAD7\|IDA_ARATH	1.8e-05	77.42	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of MELO3C005351.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPP8\|A0A0A0KPP8_CUCSA	4.3e-25	79.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1	[more]
tr\|A0A2P6R1Y4\|A0A2P6R1Y4_ROSCH	1.2e-06	76.32	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4...	[more]
tr\|A0A0A0KR07\|A0A0A0KR07_CUCSA	3.8e-05	73.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
tr\|A0A151R950\|A0A151R950_CAJCA	8.5e-05	51.16	Protein IDA OS=Cajanus cajan OX=3821 GN=KK1_039532 PE=4 SV=1	[more]
tr\|M5XH24\|M5XH24_PRUPE	1.1e-04	69.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017234mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005351.2.1	MELO3C005351.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 3..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005351.2	Csa5G577390	Cucumber (Chinese Long) v2	cumedB329
MELO3C005351.2	CSPI05G20110	Wild cucumber (PI 183967)	cpimedB331
MELO3C005351.2	Cp4.1LG13g00350	Cucurbita pepo (Zucchini)	cpemedB174
MELO3C005351.2	Cla002315	Watermelon (97103) v1	medwmB030
MELO3C005351.2	ClCG01G005780	Watermelon (Charleston Gray)	medwcgB017
MELO3C005351.2	Cla97C01G006050	Watermelon (97103) v2	medwmbB007
MELO3C005351.2	CsaV3_5G028910	Cucumber (Chinese Long) v3	cucmedB342
MELO3C005351.2	CsaV3_5G033860	Cucumber (Chinese Long) v3	cucmedB348

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C005351.2	MELO3C012204.2	Melon (DHL92) v3.6.1	medmedB004

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005351.2	Wax gourd	medwgoB011
MELO3C005351.2	Cucumber (Gy14) v2	cgybmedB293
MELO3C005351.2	Cucumber (Gy14) v1	cgymedB463
MELO3C005351.2	Cucurbita maxima (Rimu)	cmamedB291
MELO3C005351.2	Cucurbita moschata (Rifu)	cmomedB277
MELO3C005351.2	Cucurbita moschata (Rifu)	cmomedB394
MELO3C005351.2	Cucurbita moschata (Rifu)	cmomedB719
MELO3C005351.2	Cucurbita pepo (Zucchini)	cpemedB019
MELO3C005351.2	Wild cucumber (PI 183967)	cpimedB337
MELO3C005351.2	Cucumber (Chinese Long) v2	cumedB335
MELO3C005351.2	Bottle gourd (USVL1VR-Ls)	lsimedB013
MELO3C005351.2	Watermelon (Charleston Gray)	medwcgB029
MELO3C005351.2	Silver-seed gourd	carmedB0746