MELO3C005191 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C005191
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionB-block binding subunit of TFIIIC
Locationchr9 : 17183858 .. 17184133 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAGAACGATTCTTGTCCAGAGTCCGACACCTCGTAGTACTTTCTAATAGAAATCAACCAAGAGAACATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCTATTTTGCAGATCATTGGCCACGCTTAGACAACAACTCGATTCTTCCCAGATTATCTATGGAGATTAAGGGTGTAAACGGGTTGAGTTGGATTGGGTTAGGAGACATTCTCAACCCAACTCATATTCTCCTTTATCCGGACCAGAAAGTCAAACTATAA

mRNA sequence

ATGGTTTACTTCACAGAACGATTCTTGTCCAGAGTCCGACACCTCGTAGTACTTTCTAATAGAAATCAACCAAGAGAACATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCTATTTTGCAGATCATTGGCCACGCTTAGACAACAACTCGATTCTTCCCAGATTATCTATGGAGATTAAGGGTGTAAACGGGTTGAGTTGGATTGGGTTAGGAGACATTCTCAACCCAACTCATATTCTCCTTTATCCGGACCAGAAAGTCAAACTATAA

Coding sequence (CDS)

ATGGTTTACTTCACAGAACGATTCTTGTCCAGAGTCCGACACCTCGTAGTACTTTCTAATAGAAATCAACCAAGAGAACATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCTATTTTGCAGATCATTGGCCACGCTTAGACAACAACTCGATTCTTCCCAGATTATCTATGGAGATTAAGGGTGTAAACGGGTTGAGTTGGATTGGGTTAGGAGACATTCTCAACCCAACTCATATTCTCCTTTATCCGGACCAGAAAGTCAAACTATAA

Protein sequence

MVYFTERFLSRVRHLVVLSNRNQPREHGLSLLVEKPWAGYFADHWPRLDNNSILPRLSMEIKGVNGLSWIGLGDILNPTHILLYPDQKVKL*
Homology
[Close]
BLAST of MELO3C005191 vs. NCBI nr
Match: gi|659082744|ref|XP_008442010.1| (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1 

Query: 1  MVYFTERFLSRVRHLVVLSNRNQPREHGLSLLVEKPWAGYFADHWPRLDNNSILPRLSME 60
          M+YFTERFL  VRHLVV  +RNQ RE GLSLLVEKPW G FADHWPRLDN+SILPRLS+E
Sbjct: 8  MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67

Query: 61 IKGVNG-LSWIGLGDILN 78
          I    G  +W+    I N
Sbjct: 68 IPLFEGKTAWVLQSSIHN 85

The following BLAST results are available for this feature:
BLAST of MELO3C005191 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082744|ref|XP_008442010.1|1.1e-1967.95PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005191T1MELO3C005191T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005191Cucurbita moschata (Rifu)cmomeB240
MELO3C005191Cucurbita moschata (Rifu)cmomeB625
MELO3C005191Wild cucumber (PI 183967)cpimeB352
MELO3C005191Cucumber (Chinese Long) v2cumeB362
MELO3C005191Watermelon (Charleston Gray)mewcgB019
MELO3C005191Watermelon (97103) v1mewmB030
MELO3C005191Cucurbita pepo (Zucchini)cpemeB157
MELO3C005191Cucurbita pepo (Zucchini)cpemeB359
MELO3C005191Bottle gourd (USVL1VR-Ls)lsimeB013
MELO3C005191Cucumber (Gy14) v2cgybmeB302
MELO3C005191Silver-seed gourdcarmeB0483
MELO3C005191Silver-seed gourdcarmeB0821
MELO3C005191Cucumber (Chinese Long) v3cucmeB361
MELO3C005191Watermelon (97103) v2mewmbB009
MELO3C005191Wax gourdmewgoB012
MELO3C005191Cucumber (Gy14) v1cgymeB607
MELO3C005191Cucurbita maxima (Rimu)cmameB252
MELO3C005191Cucurbita maxima (Rimu)cmameB635