MELO3C005177 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005177
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ileal sodium/bile acid cotransporter, putative
Location	chr9 : 17051973 .. 17052446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGGCCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGCCCAATTCATCTCCTCCACTTTTGACACATCTCTTTGCGGCTGCAGTCTTGATTAGCTTTGCAGTTTCGTTTGCTGGAATTTTCCTTCAAAATGGATTCCCGAGAATCGCGCTTCTGTTCGAAAAGATTGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCGTAGCAAGTCTTCTAATCCATCAAAACTTTGCTTGGATCTCTTGGCTGGCTTCTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG

mRNA sequence

ATGGAACCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGGCCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGCCCAATTCATCTCCTCCACTTTTGACACATCTCTTTGCGGCTGCAGTCTTGATTAGCTTTGCAGTTTCGTTTGCTGGAATTTTCCTTCAAAATGGATTCCCGAGAATCGCGCTTCTGTTCGAAAAGATTGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCGTAGCAAGTCTTCTAATCCATCAAAACTTTGCTTGGATCTCTTGGCTGGCTTCTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG

Coding sequence (CDS)

ATGGAACCAAGTTCACAGCAAATTTCCATAGATATGAATGAACTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGAAATCAACAGCTTACCAATTTGCATCACAATGCAGAGGCCATCACCAGCCAACAGCTCTAAGACTGAGAATAATGTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCTTTGTTCATTACCTCGCCCAATTCATCTCCTCCACTTTTGACACATCTCTTTGCGGCTGCAGTCTTGATTAGCTTTGCAGTTTCGTTTGCTGGAATTTTCCTTCAAAATGGATTCCCGAGAATCGCGCTTCTGTTCGAAAAGATTGGTGCTCTTATTGCTGCAATTGGTGTGTGCATCGTAGCAAGTCTTCTAATCCATCAAAACTTTGCTTGGATCTCTTGGCTGGCTTCTGGCTTCTCCTTGATGGCTTTTGTTCTATCATTTAGAGGGTAG

Protein sequence

MEPSSQQISIDMNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFRG*

Homology

[Close]

BLAST of MELO3C005177 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.1e-70
Identity = 139/157 (88.54%), Postives = 144/157 (91.72%), Query Frame = 1


Query: 1   MEPSSQQISIDMNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGL 60
           ME SSQQISIDMN LYS IT+INERNPEIN LPICI MQ  SPANSSKTENNVG TILGL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
           TFQAVLALFITS  SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIA
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFRG 158
           AIGVCI+ASLLIHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157

[Close]

BLAST of MELO3C005177 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-38
Identity = 92/165 (55.76%), Postives = 116/165 (70.30%), Query Frame = 1


Query: 1   MEPSSQQISIDMNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNV 60
           M  +S Q S+DM+   SFI  I++RN  +       N LP+ I MQ+ SP  ++ +   +
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQ-SPQATADSSQKL 60

Query: 61  GKTILGLTFQAVLALFITSPNSSPP-LLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLF 120
           GK IL L+FQAVLALFI+SP +SPP LL H FAAAV ISFAVSFA +FL N FPR A LF
Sbjct: 61  GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120

Query: 121 EKIGALIAAIGVCIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 157
           EK+GAL +A GVC +AS LL+HQNFAWI W+A  FS++ F LSF+
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of MELO3C005177 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 82/166 (49.40%), Postives = 107/166 (64.46%), Query Frame = 1


Query: 2   EPSSQQISIDMNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTEN 61
           E    +IS+DMN+L S I A+  RNP I+S          LPI I MQRPSP NS +   
Sbjct: 3   ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ--- 62

Query: 62  NVGKTILGLTFQAVLALFIT-SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIAL 121
             G T L LTFQA++ LF++ +P+SS PL + LFAA +L SF  S+ G+ LQ  FP+ A 
Sbjct: 63  -FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 122

Query: 122 LFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFR 157
           L +  GAL AAIG CI+ SLL++ NF WI WLA+G  L AF++SF+
Sbjct: 123 LLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of MELO3C005177 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 29  INSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFITSP--NSSPPLLTHLFAA 88
           INSL I +   +P P  S      +GKTIL L+FQ V+AL ++S    +   L   +   
Sbjct: 84  INSLEIEMQSYQPRPPVS------LGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKI 143

Query: 89  AVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGF 148
           +++++FA SF+GIFL++ +P++A + E IG+LIAA+G  I+ S+ +  N  W++WLA  F
Sbjct: 144 SMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAF 203

Query: 149 SLMAFVLS 155
           SL+AF  S
Sbjct: 204 SLLAFFSS 205

[Close]

BLAST of MELO3C005177 vs. TrEMBL
Match: W9RD01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025821 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 45/150 (30.00%), Postives = 76/150 (50.67%), Query Frame = 1


Query: 12  MNELYSFITAINE---RNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLAL 71
           +  LY+F  A+     R+   ++LP+ I          S T    GKT+L LT Q VL L
Sbjct: 23  ITNLYTFNRAMRLFLLRSTSSDTLPVYIRSDY-----QSNTPMRPGKTMLTLTLQTVLTL 82

Query: 72  FITSP---NSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVC 131
            +++    +SS  L   L    ++I+FAV    I L++ +PR A   +K  ++ A +G  
Sbjct: 83  ALSTSSGNSSSYSLSIQLVTVIMVIAFAVFSLAILLRDAYPRAASTLDKAASVFAVMGFF 142

Query: 132 IVASL-LIHQNFAWISWLASGFSLMAFVLS 155
           ++ +  L+  +F WI WLA    ++A ++S
Sbjct: 143 LMTNTNLLSSHFKWIGWLAFALCMLASIIS 167

[Close]

BLAST of MELO3C005177 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 139/157 (88.54%), Postives = 144/157 (91.72%), Query Frame = 1


Query: 1   MEPSSQQISIDMNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGL 60
           ME SSQQISIDMN LYS IT+INERNPEIN LPICI MQ  SPANSSKTENNVG TILGL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
           TFQAVLALFITS  SSPPLLTHLF AAVLISFAVSF G+FLQ+GFPRIALLFEKIGALIA
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFRG 158
           AIGVCI+ASLLIHQNFAWISWLA GFSLMAF+LSFRG
Sbjct: 121 AIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFRG 157

[Close]

BLAST of MELO3C005177 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.3e-38
Identity = 92/165 (55.76%), Postives = 116/165 (70.30%), Query Frame = 1


Query: 1   MEPSSQQISIDMNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNV 60
           M  +S Q S+DM+   SFI  I++RN  +       N LP+ I MQ+ SP  ++ +   +
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQ-SPQATADSSQKL 60

Query: 61  GKTILGLTFQAVLALFITSPNSSPP-LLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLF 120
           GK IL L+FQAVLALFI+SP +SPP LL H FAAAV ISFAVSFA +FL N FPR A LF
Sbjct: 61  GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120

Query: 121 EKIGALIAAIGVCIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 157
           EK+GAL +A GVC +AS LL+HQNFAWI W+A  FS++ F LSF+
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of MELO3C005177 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 82/166 (49.40%), Postives = 107/166 (64.46%), Query Frame = 1


Query: 2   EPSSQQISIDMNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTEN 61
           E    +IS+DMN+L S I A+  RNP I+S          LPI I MQRPSP NS +   
Sbjct: 3   ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ--- 62

Query: 62  NVGKTILGLTFQAVLALFIT-SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIAL 121
             G T L LTFQA++ LF++ +P+SS PL + LFAA +L SF  S+ G+ LQ  FP+ A 
Sbjct: 63  -FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 122

Query: 122 LFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFR 157
           L +  GAL AAIG CI+ SLL++ NF WI WLA+G  L AF++SF+
Sbjct: 123 LLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of MELO3C005177 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-17
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 1


Query: 47  SKTENNVGKTILGLTFQAVLALFITSPNSSPP--------LLTHLFAAAVLISFAVSFAG 106
           SK   ++GKT+LGLTFQA++ L + S    P         L  H+   A++I+FA  F+ 
Sbjct: 93  SKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLPLHMVGVAMVIAFAACFSA 152

Query: 107 IFLQNGFPRIALLFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSF 156
           IFL   +PR A L EKIG++ AA+G  ++ S+ +   F WI WLA  FSL+AF L+F
Sbjct: 153 IFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFLSNIFIWICWLACAFSLLAFTLAF 209

[Close]

BLAST of MELO3C005177 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 29  INSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFITSP--NSSPPLLTHLFAA 88
           INSL I +   +P P  S      +GKTIL L+FQ V+AL ++S    +   L   +   
Sbjct: 84  INSLEIEMQSYQPRPPVS------LGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKI 143

Query: 89  AVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLIHQNFAWISWLASGF 148
           +++++FA SF+GIFL++ +P++A + E IG+LIAA+G  I+ S+ +  N  W++WLA  F
Sbjct: 144 SMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAF 203

Query: 149 SLMAFVLS 155
           SL+AF  S
Sbjct: 204 SLLAFFSS 205

The following BLAST results are available for this feature:

BLAST of MELO3C005177 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN8_CUCSA	8.1e-70	88.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KJP2_CUCSA	3.7e-38	55.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1	[more]
A0A0A0KQ03_CUCSA	2.7e-33	49.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1	[more]
A0A061EGV0_THECC	8.8e-16	40.63	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ...	[more]
W9RD01_9ROSA	2.6e-07	30.00	Uncharacterized protein OS=Morus notabilis GN=L484_025821 PE=4 SV=1	[more]

BLAST of MELO3C005177 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194626\|gb\|KGN49803.1\|	1.2e-69	88.54	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
gi\|700194631\|gb\|KGN49808.1\|	5.3e-38	55.76	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
gi\|700194629\|gb\|KGN49806.1\|	3.9e-33	49.40	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
gi\|645277436\|ref\|XP_008243769.1\|	5.2e-17	42.74	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]
gi\|590698393\|ref\|XP_007045702.1\|	1.3e-15	40.63	Ileal sodium/bile acid cotransporter, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53408	melon EST collection version 4.0	transcribed_cluster
MU55096	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005177T1	MELO3C005177T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53408	MU53408	transcribed_cluster
MU55096	MU55096	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005177	Cucumber (Chinese Long) v3	cucmeB361
MELO3C005177	Watermelon (97103) v2	mewmbB009
MELO3C005177	Wax gourd	mewgoB012
MELO3C005177	Cucumber (Gy14) v1	cgymeB607
MELO3C005177	Cucurbita maxima (Rimu)	cmameB252
MELO3C005177	Cucurbita maxima (Rimu)	cmameB635
MELO3C005177	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005177	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005177	Wild cucumber (PI 183967)	cpimeB352
MELO3C005177	Cucumber (Chinese Long) v2	cumeB362
MELO3C005177	Watermelon (Charleston Gray)	mewcgB019
MELO3C005177	Watermelon (97103) v1	mewmB030
MELO3C005177	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005177	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005177	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005177	Cucumber (Gy14) v2	cgybmeB302
MELO3C005177	Silver-seed gourd	carmeB0483
MELO3C005177	Silver-seed gourd	carmeB0821