MELO3C005165 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005165
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr9 : 16931670 .. 16931978 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTTGTGTCGACGCTCAGCCTTCTATGGGGTTTTTGCGGGCCTGAAGTTTGGGGATCTTTCTGGCTTGGTTGCTAATCATGGTAAGAGTTTTTTTTTTTTTTTTTTTGTGGTAGGAGTTGGCAGTGAGACTGCTTCTTTGTTGGCTGATTGTTTGGGGTTTGGGGTTTGTGCTTGGTCATTTCCCTGTTCGATACCTTGGGCTTCCATTACTCTCTGGTAGGTTATGGATTGCCGATTGTGCCCTTATTCAACATATTACTAGTAGGATTCGTTCATGGGATGCTAGAGTCTTGTCTTGCTAG

mRNA sequence

ATGATTTTTTGTGTCGACGCTCAGCCTTCTATGGGACTGCTTCTTTGTTGGCTGATTGTTTGGGGTTTGGGGTTTGTGCTTGGTCATTTCCCTGTTCGATACCTTGGGCTTCCATTACTCTCTGGTAGGTTATGGATTGCCGATTGTGCCCTTATTCAACATATTACTAGTAGGATTCGTTCATGGGATGCTAGAGTCTTGTCTTGCTAG

Coding sequence (CDS)

ATGATTTTTTGTGTCGACGCTCAGCCTTCTATGGGACTGCTTCTTTGTTGGCTGATTGTTTGGGGTTTGGGGTTTGTGCTTGGTCATTTCCCTGTTCGATACCTTGGGCTTCCATTACTCTCTGGTAGGTTATGGATTGCCGATTGTGCCCTTATTCAACATATTACTAGTAGGATTCGTTCATGGGATGCTAGAGTCTTGTCTTGCTAG

Protein sequence

MIFCVDAQPSMGLLLCWLIVWGLGFVLGHFPVRYLGLPLLSGRLWIADCALIQHITSRIRSWDARVLSC*

Homology

[Close]

BLAST of MELO3C005165 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 23  LGFVLGHFPVRYLGLPLLSGRLWIADCA-LIQHITSRIRSWDARVLS 69
           +GF LG+ PVRYLGLPLL+GRL   DCA LIQ ITS IRSW ARVLS
Sbjct: 924 MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLS 970

[Close]

BLAST of MELO3C005165 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-08
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1


Query: 23  LGFVLGHFPVRYLGLPLLSGRLWIADCA-LIQHITSRIRSWDARVLS 69
           +GFV G+  VRYLGLPLL+GRL   DCA LIQ ITS+IRSW ARVLS
Sbjct: 178 MGFVRGNLSVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLS 224

[Close]

BLAST of MELO3C005165 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-07
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 23  LGFVLGHFPVRYLGLPLLSGRLWIADCA-LIQHITSRIRSWDARVLS 69
           +GFV G+ PVRYLGLPLL+GRL   DC  LIQ ITSRIRS  ARVLS
Sbjct: 571 MGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLS 617

[Close]

BLAST of MELO3C005165 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-07
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 23  LGFVLGHFPVRYLGLPLLSGRLWIADCA-LIQHITSRIRSWDARVLS 69
           +GFV G+  VRYLGLPLL+GRL   D A LIQ ITSRIRSW ARVLS
Sbjct: 122 MGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLS 168

The following BLAST results are available for this feature:

BLAST of MELO3C005165 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114595\|ref\|XP_008457134.1\|	5.6e-08	74.47	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]
gi\|659126450\|ref\|XP_008463188.1\|	9.6e-08	72.34	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659102432\|ref\|XP_008452126.1\|	4.8e-07	72.34	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]
gi\|659121154\|ref\|XP_008460525.1\|	8.1e-07	72.34	PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005165T1	MELO3C005165T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005165	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005165	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005165	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005165	Silver-seed gourd	carmeB0483
MELO3C005165	Silver-seed gourd	carmeB0821
MELO3C005165	Watermelon (97103) v2	mewmbB009
MELO3C005165	Wax gourd	mewgoB012
MELO3C005165	Cucurbita maxima (Rimu)	cmameB252
MELO3C005165	Cucurbita maxima (Rimu)	cmameB635
MELO3C005165	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005165	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005165	Watermelon (Charleston Gray)	mewcgB019
MELO3C005165	Watermelon (97103) v1	mewmB030