MELO3C005164 (gene) Melon (DHL92) v3.5.1

NameMELO3C005164
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc knuckle (CCHC-type) family protein
Locationchr9 : 16923930 .. 16924295 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

mRNA sequence

ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

Coding sequence (CDS)

ATGGTTTGTCTTAGAAGGGTGGACTTTATTGTGTTTGTTACTTATGAATGGAAACCTCGTAGATGTAATTCTTGTAATGCCTTTGGTCACTCTAGAGGAAAGTGCCCAGGTATGGTGGTAAAACCGGTTCACACGGAAGAAGTTGTGAAGGGGGAGTCGAGTAAGGGTGATGATTTGGCGATTGTGGCCTGTGGAGATGTTGTGTTGGAGTCTTTCAAGCAAGTTAAGGAAGGTGAATTTACGGGCTCTCCAAATAAGCCCCTTACTCAGATCGAGAAAGATGCGGGTGATAGTGTTGACTTTACCCTTGTGACTAGTCATCGAAGGAGGTTGGTTTCAGTTAGAGATCATGGTGGAGGAAGTTAG

Protein sequence

MVCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAIVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHGGGS*
BLAST of MELO3C005164 vs. TrEMBL
Match: A0A0A0LAL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417710 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-08
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1

Query: 50  KGE--SSKGDDLAIVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSH 109
           KGE  S++G+ L IVAC  +++ESF Q+KEGE  GS ++   Q E+D   S +FT +T  
Sbjct: 12  KGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRK 71

Query: 110 RRRLVSVRDHGGG 121
           RR LV V+DHG G
Sbjct: 72  RRELVLVKDHGVG 84

BLAST of MELO3C005164 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 1

Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVV-KGESSKGDDLA 61
           V LR VDFIV + YEWKP +CN C  FGHS GKC   V   V  EEVV K   SKGD L 
Sbjct: 276 VSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLD 335

Query: 62  IVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
              CG+VVLESFKQ++EGE   S N+  +Q+EK+ G   DFTLVT  +R LV VRD G
Sbjct: 336 SEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVFVRDRG 393

BLAST of MELO3C005164 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 6.8e-25
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1

Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR VDF V V YEWKPR+CN C AFGHS   C   V      EEVV     KGDD+  
Sbjct: 304 VSLRGVDFNVSVNYEWKPRKCNLCCAFGHSGSNCSRSVESKTIQEEVVH----KGDDVDS 363

Query: 62  VACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
             CG+VVLESFKQ++EGE   SPN+  +Q+EK  G S +FTLVT  +  LVSVRD G
Sbjct: 364 EPCGEVVLESFKQLEEGEIRNSPNRHNSQVEKGVGKSDEFTLVTRRKSELVSVRDRG 416

BLAST of MELO3C005164 vs. NCBI nr
Match: gi|659133524|ref|XP_008466769.1| (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 61/118 (51.69%), Postives = 73/118 (61.86%), Query Frame = 1

Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVV-KGESSKGDDLA 61
           V L  VDF V + YEWKPR+CN C AFGHS  KC   V      EEVV K    K D L 
Sbjct: 53  VSLGGVDFNVSINYEWKPRKCNLCCAFGHSGSKCSRSVESKTIQEEVVHKIIHGKRDGLD 112

Query: 62  IVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
              CG+VVLESFKQ++E E   SPN+  +++E+  G S +FTLVT  +  LVSVRD G
Sbjct: 113 SKPCGEVVLESFKQLEEVEIRSSPNRHNSKVERGGGKSDEFTLVTRKKSELVSVRDRG 170

BLAST of MELO3C005164 vs. NCBI nr
Match: gi|778681441|ref|XP_011651511.1| (PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = 1

Query: 1   MVCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLA 60
           +V LR  DFIV + YEWKP++CN C +FGHS    P  V    H E+V    S+K +DL 
Sbjct: 138 IVNLRGEDFIVTINYEWKPQKCNLCRSFGHSSASYPKSV---EHKEDV----SNKDEDLT 197

Query: 61  IVACGDVVLESFKQVKEGEFTGSPNKPLTQIEKDAGDSVDFTLVTSHRRRLVSVRDHG 119
            VA GDVV+ESFKQ++EGE   S    +T  EK   +  DFTL    ++ LVS+RD G
Sbjct: 198 SVAYGDVVMESFKQLEEGEINSS--LTMTIQEKVIENQNDFTLAARRKKELVSIRDKG 246

BLAST of MELO3C005164 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 1

Query: 2   VCLRRVDFIVFVTYEWKPRRCNSCNAFGHSRGKCPGMVVKPVHTEEVVKGESSKGDDLAI 61
           V LR V+F V V YEWKPR+CN C AFGHS  KC          EEVV     KGDD+  
Sbjct: 424 VNLRGVEFNVSVKYEWKPRKCNLCGAFGHSSSKCSRSEESKTIQEEVV----HKGDDVYS 483

Query: 62  VACGDVVLESFKQVKEGE 80
             CG+VVLE+FKQ++EGE
Sbjct: 484 EPCGEVVLEAFKQLEEGE 497

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LAL0_CUCSA5.2e-0849.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G417710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659114595|ref|XP_008457134.1|1.8e-2556.78PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659126448|ref|XP_008463187.1|6.8e-2555.56PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659133524|ref|XP_008466769.1|2.7e-2151.69PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo][more]
gi|778681441|ref|XP_011651511.1|1.8e-1747.46PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus][more]
gi|659121150|ref|XP_008460523.1|5.9e-1355.13PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005164T1MELO3C005164T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None