MELO3C005135 (gene) Melon (DHL92) v3.5.1

NameMELO3C005135
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA polymerase I-specific transcription initiation factor RRN3
Locationchr9 : 16450869 .. 16451111 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATACCCGTAAGGGAAATTATGCAGCTAAATCATCTGAAGAAGTTCATGAAGCTCCAGTTTCAAAGTCAGCCATGCATGGTGTGAGAATGAGAGGCCGTCGGTTTAAAAGTACTCCGCCGCGAAGACCCTATCGTCTTCCGTCAAAAAAATTTCAGGCACATGTCTCCGAAAGCTCTCATATGTCTGTGCAAGATGAAGTTGGTGCTGGAAGTGCTGCAAAAGATGCTGGATTCTGA

mRNA sequence

ATGGTGAATACCCGTAAGGGAAATTATGCAGCTAAATCATCTGAAGAAGTTCATGAAGCTCCAGTTTCAAAGTCAGCCATGCATGGTGTGAGAATGAGAGGCCGTCGGTTTAAAAGTACTCCGCCGCGAAGACCCTATCGTCTTCCGTCAAAAAAATTTCAGGCACATGTCTCCGAAAGCTCTCATATGTCTGTGCAAGATGAAGTTGGTGCTGGAAGTGCTGCAAAAGATGCTGGATTCTGA

Coding sequence (CDS)

ATGGTGAATACCCGTAAGGGAAATTATGCAGCTAAATCATCTGAAGAAGTTCATGAAGCTCCAGTTTCAAAGTCAGCCATGCATGGTGTGAGAATGAGAGGCCGTCGGTTTAAAAGTACTCCGCCGCGAAGACCCTATCGTCTTCCGTCAAAAAAATTTCAGGCACATGTCTCCGAAAGCTCTCATATGTCTGTGCAAGATGAAGTTGGTGCTGGAAGTGCTGCAAAAGATGCTGGATTCTGA

Protein sequence

MVNTRKGNYAAKSSEEVHEAPVSKSAMHGVRMRGRRFKSTPPRRPYRLPSKKFQAHVSESSHMSVQDEVGAGSAAKDAGF*
BLAST of MELO3C005135 vs. NCBI nr
Match: gi|659109747|ref|XP_008454855.1| (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1

Query: 1  MVNTRKGNYAAKSSEEVHEAPVSKSAMHGVRMRGRRFKSTPPRRPYRLPSKKFQAHVSES 60
          MVNTRKG Y  KS++EV E P  ++ +HG+R+ G+RFKST PRRPY+LPS+K  A++S  
Sbjct: 1  MVNTRKGTY--KSTKEVPEPPSPRAVVHGIRVHGQRFKSTLPRRPYKLPSEKAHAYISSG 60

Query: 61 SHMSVQDEVGAGSAAKDA 79
          S   + +EV  G+  KDA
Sbjct: 61 SFELIHEEVVYGNVMKDA 76

BLAST of MELO3C005135 vs. NCBI nr
Match: gi|659126982|ref|XP_008463460.1| (PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1

Query: 1  MVNTRKGNYAAKSSEEVHEAPVSKSAMHGVRMRGRRFKSTPPRRPYRLPSKKFQAHVSES 60
          MVNTRKG Y  KSSEEV EAP  K+ +HG+R+R RRFKST PRRPY+LPSKK  A +  +
Sbjct: 1  MVNTRKGTYTDKSSEEVLEAPSPKATVHGIRVRERRFKSTLPRRPYKLPSKKSHADIPTN 60

Query: 61 S 62
          S
Sbjct: 61 S 61

BLAST of MELO3C005135 vs. NCBI nr
Match: gi|659123177|ref|XP_008461533.1| (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1

Query: 1  MVNTRKGNYAAKSSEEVHEAPVSKSAMHGVRMRGRRFKSTPPRRPYRLPSKKFQAHV 58
          MVNTRKG Y  KSSEEV +AP S++A+H V  RGRRFKSTP +R Y+LPS+K  A +
Sbjct: 1  MVNTRKGTYTDKSSEEVLKAPSSRAAVHEV--RGRRFKSTPLQRSYKLPSEKSHADI 55

BLAST of MELO3C005135 vs. NCBI nr
Match: gi|659120594|ref|XP_008460264.1| (PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1

Query: 1  MVNTRKGNYAAKSSEEVHEAPVSKSAMHGVRMRGRRFKSTPPRRPYRLPSKKFQAHVS 59
          MVNTRKG+Y  + SE+  E  +S   +  V++RG+RFKSTPPRR YRLPS+K   H S
Sbjct: 1  MVNTRKGSYMTQPSEDAPEVTISSPPIRQVKVRGQRFKSTPPRRSYRLPSEKSLLHES 58

BLAST of MELO3C005135 vs. NCBI nr
Match: gi|659130162|ref|XP_008465030.1| (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-08
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1

Query: 1  MVNTRKGNYAAKSSEEVHEAPVSK-SAMHGVRMRGRRFKSTPPRRPYRLPSKKFQ----A 60
          MVNT KG+Y  K SE+   A  S  S +H V+++GRRFKSTPPR+ YRLP +K Q    +
Sbjct: 1  MVNTHKGSYVPKQSEDAPNAITSSPSPVHHVKVKGRRFKSTPPRKRYRLPYEKVQGEATS 60

Query: 61 HVSESSHMSVQDEVGAGSA 75
           + ES       EVG  +A
Sbjct: 61 KLQESLRSKAVSEVGESAA 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659109747|ref|XP_008454855.1|1.4e-1352.56PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo][more]
gi|659126982|ref|XP_008463460.1|3.0e-1365.57PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo][more]
gi|659123177|ref|XP_008461533.1|3.5e-0963.16PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo][more]
gi|659120594|ref|XP_008460264.1|7.7e-0955.17PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like [Cucumis melo... [more]
gi|659130162|ref|XP_008465030.1|3.8e-0846.84PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005135T1MELO3C005135T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None