MELO3C005119 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C005119
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr9 : 16200230 .. 16200966 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGCCCGTCCAACAATGGTTTTGGCTGGAACAATGAATTGAAGTGCACTGTTGCCGAAAAGGATGAATTCGACAATTGGGTGAAGGTACGCTGTCTTTTCCTTTACTCGTCTATAATAGAAGCTAAACTAAACTTCATCCACTTTAACACTTGAACAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGCAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTGCTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCGGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGACGGTCAGCCTGCAGAGACTGTTGACATAATTCAAAATGCCATGGAGTACACTAATGATCAGCTCAACCGCATTACAGACGGGTCAATCTTAAGGAATCAAGATGAAGCACGATACGGCAGGAGGTCGTTCGACAATTACAGGCCATCCCTGAACTTAGTAGAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACGGTGATTCTCCAAGAAAACCCATGA

mRNA sequence

ATGCAGGGCCCGTCCAACAATGGTTTTGGCTGGAACAATGAATTGAAGTGCACTGTTGCCGAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGCAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTGCTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCGGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGACGGCCATCCCTGAACTTAGTAGAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACGGTGATTCTCCAAGAAAACCCATGA

Coding sequence (CDS)

ATGCAGGGCCCGTCCAACAATGGTTTTGGCTGGAACAATGAATTGAAGTGCACTGTTGCCGAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGCAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTGCTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCGGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGACGGCCATCCCTGAACTTAGTAGAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACGGTGATTCTCCAAGAAAACCCATGA

Protein sequence

MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDERALGDICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFVAINLSGQVMVGMLQAGQRGRGTAIPELSRINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQENP*
Homology
[Close]
BLAST of MELO3C005119 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.3e-30
Identity = 86/224 (38.39%), Postives = 117/224 (52.23%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GP+ +GFGWN+E KC VAEK+ FD+W  +HPAAK LLN+SF HY+ LSY+F +   +R
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGK---DR 497

Query: 61  ALG----DICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFVAINL------- 120
           A G         GSN P GY+  AA    +   P M+S GLNMS ++ +           
Sbjct: 498 ATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERR 557

Query: 121 ----------------SGQVMVGMLQAGQR------------------------GRGTAI 174
                           SG ++   ++ G                              AI
Sbjct: 558 NVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAI 617

[Close]
BLAST of MELO3C005119 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M GP+ +GFGWN+E KC VAEK+ FDNWV++ PAAK LLN  FP+Y+ L+Y+F R   +R
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGR---DR 460

Query: 61  ALGDICR----CGSNVP-FGYEGIAAGDGNNMKIPTMFSQGLNMSREE 104
           A G         GSN P  GY+    GDGN    P ++S+G+++ +++
Sbjct: 461 ATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSRGVDILQDD 504

[Close]
BLAST of MELO3C005119 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDE- 60
           M+ P+ +GF WN ++KC +AE+D FDNWV+ +PA K LLN+ FPHY  LSY+F +   + 
Sbjct: 28  MREPAGSGFEWNGDMKCIIAERDMFDNWVRTYPATKGLLNKVFPHYGMLSYVFGKDHTKG 87

Query: 61  ------RALGDICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFV 106
                 R  G  C+  S        +   DG  ++ PTM S  +N+S ++ +
Sbjct: 88  PVWRYSRTSGPTCKDPSAC------VPTEDGLKIEFPTMCSPRMNLSLDDMM 133

[Close]
BLAST of MELO3C005119 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M  PS  GFGWN++ KC V +KD FDNWVK HP+A+ L N+ FP+   LS +F +   +R
Sbjct: 91  MLEPSAGGFGWNDKDKCIVCDKDIFDNWVKGHPSARGLSNKPFPYLEKLSIVFVK---DR 150

Query: 61  ALGDICRCGSNV 73
           A G+     ++V
Sbjct: 151 ATGEAAESPADV 159

[Close]
BLAST of MELO3C005119 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 30  KNHPAAKDLLNRSFPHYNNLSYIFRRACDERALGD----ICRCGSNVPFGYEGIAAGDGN 89
           + HPAAK LLN+ FP+Y+ L Y+F R   +R  G          SN P  YEG    D N
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFER---DRVTGQGVKTFVNVESNDPIEYEGFQTPDEN 335

Query: 90  NMKIPTMFSQGLNMS 101
           +MK PTM+SQG NMS
Sbjct: 336 DMKNPTMYSQGFNMS 347

[Close]
BLAST of MELO3C005119 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 139.0 bits (349), Expect = 7.7e-30
Identity = 86/224 (38.39%), Postives = 117/224 (52.23%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GP+ +GFGWN+E KC VAEK+ FD+W  +HPAAK LLN+SF HY+ LSY+F +   +R
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGK---DR 497

Query: 61  ALG----DICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFVAINL------- 120
           A G         GSN P GY+  AA    +   P M+S GLNMS ++ +           
Sbjct: 498 ATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERR 557

Query: 121 ----------------SGQVMVGMLQAGQR------------------------GRGTAI 174
                           SG ++   ++ G                              AI
Sbjct: 558 NVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAI 617

[Close]
BLAST of MELO3C005119 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 85/223 (38.12%), Postives = 119/223 (53.36%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR--ACD 60
           M+GP+ +GFGWN+E KC VAEK+ FD+W  +HPAAK LLN+SFPHY+ LSY+F +  A  
Sbjct: 32  MRGPTCSGFGWNDEQKCIVAEKEVFDDW--SHPAAKGLLNKSFPHYDELSYVFSKDHATG 91

Query: 61  ERALGDICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFVAINLSGQVMVG-- 120
            RA       GSN P GY+  AA   ++     M+S+GLNMS +E +    + +V  G  
Sbjct: 92  GRA-ESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTR-TARVSEGRY 151

Query: 121 MLQAGQRGRG-----------TAI----PELSRINKCLCM-------------------- 174
           +    ++ RG           TAI     +L+RI +   +                    
Sbjct: 152 VSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIP 211

[Close]
BLAST of MELO3C005119 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR-ACDE 60
           M+GPS + FGWN+E KC + E D  DNWV+ HP AK LLN+SFP+Y+ L+Y+F++     
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  RALGDICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREE 104
           R +      GSN P  YEG    DGN+M+IPT++SQG NMS+E+
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQED 104

[Close]
BLAST of MELO3C005119 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GP+ +GFGWN+E KC V EK+ FD+WVK+HP AK LLN+SFPHY+   Y+F +   +R
Sbjct: 257 MRGPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGLLNKSFPHYDERLYVFGK---DR 316

Query: 61  ALG----DICRCGSNVPFGYEGIAAGDGNNMKIPTMFSQGLNMSREEFVAINLS 111
           A G         GSN P GY+   A    +   P M+SQGLNMS ++ +   ++
Sbjct: 317 ATGGRAKSFADVGSNNPVGYDAFVADATPDTDFPPMYSQGLNMSPDDLMGTRIT 367

[Close]
BLAST of MELO3C005119 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1 

Query: 1   MQGPSNNGFGWNNELKCTVAEKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GPS +GFGWN E +C +AE+D FD+W+K+HPAAK LL++SFP+Y++LSY+F +   +R
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGK---DR 143

Query: 61  ALG----DICRCGSNVPFGY-EGIAAGDGNNMKIPTMFSQGLNMSREEFVAI 108
           A G         GSNV   + + I  GD ++  IPTM+SQG++MS +E   I
Sbjct: 144 ATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGI 192

The following BLAST results are available for this feature:
BLAST of MELO3C005119 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME5.3e-3038.39Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME1.2e-1646.30Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQ83_CUCSA9.2e-1437.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
A0A0A9TMG5_ARUDO1.4e-0945.83Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A5Y732_CUCME2.6e-0848.00Transposase OS=Cucumis melo PE=4 SV=1[more]
BLAST of MELO3C005119 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136287|gb|ADN34114.1|7.7e-3038.39retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659123900|ref|XP_008461893.1|3.3e-2538.12PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659068476|ref|XP_008444620.1|1.2e-2250.96PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|1.5e-2045.61PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|2.5e-2048.21PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005119T1MELO3C005119T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005119Wax gourdmewgoB005
MELO3C005119Cucumber (Gy14) v1cgymeB523
MELO3C005119Cucurbita maxima (Rimu)cmameB252
MELO3C005119Cucurbita maxima (Rimu)cmameB635
MELO3C005119Cucurbita moschata (Rifu)cmomeB240
MELO3C005119Cucurbita moschata (Rifu)cmomeB625
MELO3C005119Wild cucumber (PI 183967)cpimeB353
MELO3C005119Cucumber (Chinese Long) v2cumeB363
MELO3C005119Watermelon (Charleston Gray)mewcgB019
MELO3C005119Watermelon (97103) v1mewmB030
MELO3C005119Cucurbita pepo (Zucchini)cpemeB157
MELO3C005119Cucurbita pepo (Zucchini)cpemeB359
MELO3C005119Bottle gourd (USVL1VR-Ls)lsimeB013
MELO3C005119Cucumber (Gy14) v2cgybmeB303
MELO3C005119Silver-seed gourdcarmeB0483
MELO3C005119Silver-seed gourdcarmeB0821
MELO3C005119Cucumber (Chinese Long) v3cucmeB362
MELO3C005119Watermelon (97103) v2mewmbB009