MELO3C005115 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005115
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Glucocorticoid-induced transcript 1 protein
Location	chr9 : 16175370 .. 16175779 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCATCATGCAGTGGGTTCGAATGGAACGATGAGACAAAGTGCATCATTGCCGAGAAGGAACTATTCGACAACTGGAAGGTAAGGATACTAATAAAAACGTGCAATACTTGCTTAGTGCACTGACCATTTTTCCTATGTTAGTTTGAAGTGCTCATGTTTTTTATGCAATCACATCCTGCAGTGAAGGGCTTCCTTAACAAATCGTTTTCCTATTATGACGAACTTGCATATGTGTTCAGGAGGGATAGAGCGACGGGTTGCTTTGTAGAGACGTTCACCGACGTTGGGTCTAACGAGCCTGACGGATATAAGGGATTTGACATGCCTGATGGAAATGATATGGAGTTTCCATCCATGTACAGCCAAAGGATTGACATGTCCCAGGATGATGTACGCACCTCATGA

mRNA sequence

ATGGGCCATCATGCAGTGGGTTCGAATGGAACGATGAGACAAAGTGCATCATTGCCGAGAAGGAACTATTCGACAACTGGAAGGAGGGATAGAGCGACGGGTTGCTTTGTAGAGACGTTCACCGACGTTGGGTCTAACGAGCCTGACGGATATAAGGGATTTGACATGCCTGATGGAAATGATATGGAGTTTCCATCCATGTACAGCCAAAGGATTGACATGTCCCAGGATGATGTACGCACCTCATGA

Coding sequence (CDS)

ATGGGCCATCATGCAGTGGGTTCGAATGGAACGATGAGACAAAGTGCATCATTGCCGAGAAGGAACTATTCGACAACTGGAAGGAGGGATAGAGCGACGGGTTGCTTTGTAGAGACGTTCACCGACGTTGGGTCTAACGAGCCTGACGGATATAAGGGATTTGACATGCCTGATGGAAATGATATGGAGTTTCCATCCATGTACAGCCAAAGGATTGACATGTCCCAGGATGATGTACGCACCTCATGA

Protein sequence

MGHHAVGSNGTMRQSASLPRRNYSTTGRRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS*

Homology

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BLAST of MELO3C005115 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 29  RDRATGCFVETFTDVGSNEP-DGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS 83
           RDRATG F ETF DVGSNEP  GY  FDM DGN+ +FP +YS+ +D+ QDDVR S
Sbjct: 455 RDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSRGVDILQDDVRAS 508

[Close]

BLAST of MELO3C005115 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 28  RRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDV 80
           ++DRATG  VETFTD+GSN+P  Y+GF  PDGNDME P++YSQ  +MSQ+DV
Sbjct: 54  KKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDV 105

[Close]

BLAST of MELO3C005115 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 29  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS 83
           RDR T  F+ETFTD+GSNEP  Y+GF+M DGN+ EF S+YSQ IDMSQ+DV  S
Sbjct: 190 RDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE-EFSSIYSQGIDMSQEDVHAS 242

[Close]

BLAST of MELO3C005115 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 29  RDRATGCFVETFTDVGSNEP-DGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS 83
           RDRATG F ETF DVGSNEP  GY  FDM DGN+ +FP +YS+ +D+ QDDVR S
Sbjct: 455 RDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSRGVDILQDDVRAS 508

The following BLAST results are available for this feature:

BLAST of MELO3C005115 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	1.1e-09	65.45	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C005115 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068476\|ref\|XP_008444620.1\|	1.0e-11	65.38	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
gi\|659093712\|ref\|XP_008447677.1\|	1.1e-10	66.67	PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo]	[more]
gi\|307135889\|gb\|ADN33754.1\|	1.6e-09	65.45	retrotransposon protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005115T1	MELO3C005115T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005115	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005115	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005115	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005115	Cucumber (Gy14) v2	cgybmeB303
MELO3C005115	Silver-seed gourd	carmeB0483
MELO3C005115	Silver-seed gourd	carmeB0821
MELO3C005115	Cucumber (Chinese Long) v3	cucmeB362
MELO3C005115	Watermelon (97103) v2	mewmbB009
MELO3C005115	Wax gourd	mewgoB005
MELO3C005115	Cucumber (Gy14) v1	cgymeB523
MELO3C005115	Cucurbita maxima (Rimu)	cmameB252
MELO3C005115	Cucurbita maxima (Rimu)	cmameB635
MELO3C005115	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005115	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005115	Wild cucumber (PI 183967)	cpimeB353
MELO3C005115	Cucumber (Chinese Long) v2	cumeB363
MELO3C005115	Watermelon (Charleston Gray)	mewcgB019
MELO3C005115	Watermelon (97103) v1	mewmB030