MELO3C005110 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005110
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	1-phosphatidylinositol phosphodiesterase
Location	chr9 : 16089129 .. 16089407 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

mRNA sequence

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

Coding sequence (CDS)

ATGGATCGCTTTGCTGAGACATTCGTCGACGTGGGGTCTAACGAACCTGTCGGGTATGAGGGGTTTGACATGCCAGATGGGAATGAGGAGTTTCCATCCGTGTACAGCCAAGGGATCGACATGTCTAAGAAGGATGTACGCGTATCACGACCTTCTCGCACGTTAGAGGGTAGAGTCGAATCAAAGAGGAAGAGGGGAAGCCAGCAAGAAGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGTACGAATGAACAACTCATGACAATTGCAGAGTGA

Protein sequence

MDRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE*

Homology

[Close]

BLAST of MELO3C005110 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-23
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 3   RFAETFVDVGSNEPVG-YEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRV-- 62
           RFAETF DVGSNEP G Y+ FDM DGNE+FP VYS+G+D+ + DVR SRPSR  EG+   
Sbjct: 461 RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGS 520

Query: 63  -ESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             SKRKRGSQ++ ++E IH+AL+ TNEQL  IAE
Sbjct: 521 SGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAE 554

[Close]

BLAST of MELO3C005110 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 5   AETFVDVGSNEPVGYE---GFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGR--- 64
           AE+F D+GSN+P GY+      MPD   +FP +YS G++MS  D+  +R +R  E R   
Sbjct: 498 AESFADIGSNDPPGYDAGAADAMPD--TDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 557

Query: 65  VESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             SKRKR        +++  A+E  NEQL  IAE
Sbjct: 558 SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 589

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-27
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 2   DRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES 61
           DRF ETF D+GSNEP+ YEGF+M DGNEEF S+YSQGIDMS++DV  S+P+ T   R  S
Sbjct: 195 DRFIETFTDIGSNEPIRYEGFNMSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARS 254

Query: 62  ---KRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
              KRKRGSQQ+GEI+VIHMAL+C N+QL  I E
Sbjct: 255 SRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVE 288

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 3   RFAETFVDVGSNEPVG-YEGFDMPDGNEEFPSVYSQGIDMSKKDVRVSRPSRTLEGRV-- 62
           RFAETF DVGSNEP G Y+ FDM DGNE+FP VYS+G+D+ + DVR SRPSR  EG+   
Sbjct: 461 RFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGS 520

Query: 63  -ESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             SKRKRGSQ++ ++E IH+AL+ TNEQL  IAE
Sbjct: 521 SGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAE 554

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-12
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNE-EFPSVYSQGIDMSKKDVRVSRPSRTLE---GR 62
           R  ETF+DVGSN    Y+GF   DGN  E P++Y QG++MS +D+  +RPSR+ E   G 
Sbjct: 174 RCTETFIDVGSNVSDEYKGFPTEDGNNMEIPTMYCQGLNMSPEDIMDTRPSRSSECRTGS 233

Query: 63  VESKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
             SKRKR  Q    +EV   A+E  N+QL  IAE
Sbjct: 234 SRSKRKRRGQDVETMEVTCSAMEYANDQLKAIAE 267

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 3   RFAETFVDVGSNEPVGYEGFDMPDGNE-EFPSVYSQGIDMSKKDVRVSRPSRTLEGRVES 62
           R  ETF D+GSN+P  YEGF  PDGN+ E P++YSQG +MS++DV   RPS   + R  S
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDVWAPRPSSASDSRTRS 120

Query: 63  K-RKRGS 68
              KRGS
Sbjct: 121 SGSKRGS 127

[Close]

BLAST of MELO3C005110 vs. NCBI nr
Match: gi|659100589|ref|XP_008451169.1| (PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 5   AETFVDVGSNEPVGYEGFDMPDG-NEEFPSVYSQGIDMSKKDVRVSRPSRTLEGR---VE 64
           AE+F DVGSN+P GY+ F      + +FP +YS G++MS  D+  +R +R  E R     
Sbjct: 346 AESFADVGSNDPAGYDAFVADAALDTDFPPMYSHGLNMSSDDLMETRTARVSERRNVSSG 405

Query: 65  SKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 93
           SKRKR        +++  A+E  NEQL  IAE
Sbjct: 406 SKRKRAGHAADSGDIVRTAIEYENEQLNRIAE 437

The following BLAST results are available for this feature:

BLAST of MELO3C005110 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	2.0e-23	63.83	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	2.6e-07	41.49	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C005110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093712\|ref\|XP_008447677.1\|	5.5e-27	65.96	PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo]	[more]
gi\|307135889\|gb\|ADN33754.1\|	2.8e-23	63.83	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|778708415\|ref\|XP_004148199.2\|	8.5e-12	47.87	PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus]	[more]
gi\|659068476\|ref\|XP_008444620.1\|	1.4e-09	53.73	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
gi\|659100589\|ref\|XP_008451169.1\|	2.6e-08	41.30	PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005110T1	MELO3C005110T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005110	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005110	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005110	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005110	Cucumber (Gy14) v2	cgybmeB303
MELO3C005110	Silver-seed gourd	carmeB0483
MELO3C005110	Silver-seed gourd	carmeB0821
MELO3C005110	Cucumber (Chinese Long) v3	cucmeB362
MELO3C005110	Watermelon (97103) v2	mewmbB009
MELO3C005110	Wax gourd	mewgoB005
MELO3C005110	Cucurbita maxima (Rimu)	cmameB252
MELO3C005110	Cucurbita maxima (Rimu)	cmameB635
MELO3C005110	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005110	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005110	Wild cucumber (PI 183967)	cpimeB353
MELO3C005110	Cucumber (Chinese Long) v2	cumeB363
MELO3C005110	Watermelon (Charleston Gray)	mewcgB019
MELO3C005110	Watermelon (97103) v1	mewmB030