MELO3C005075 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005075
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	chr9 : 15585863 .. 15586315 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCCACCCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCGTAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTGAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCTATCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAATGGATAACGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGTCGTTCAACTGATGGGCTTCACAAATGCCAAAGATCTGTCGTAA

mRNA sequence

ATGGCCAATGCCACCCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCGTAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTGAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCTATCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAATGGATAACGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGTCGTTCAACTGATGGGCTTCACAAATGCCAAAGATCTGTCGTAA

Coding sequence (CDS)

ATGGCCAATGCCACCCCTCCAAATTTCTCTGTTCTCGACACACCTGCAACAAGTTTCACAAATCCACCGCTGAATCAAATATTAAACCAACTTACAACCGTAAAGCTAGATAGGAGCAACTACCTATTGTGGAAGACGCTAGCTCTACCCATTCTGAAAGGATACAAGTTGGAAGGACATTTAACAGGTGAGAAACCTTGCCCTGAAAAATTCGTTACTATCACATCCTCTGCTGGTTCTAATGGCTCTATCACGGAAGAAGGAGATGATCGTGAACAAAGAGCTCCTAAACAAATAGCTTCTTCAAGCATGTCAGCACCTGCTATTATCAATCCCTTGTTCGAACAATGGATAACGACTGATTTACTACTGCTTGGTTGGTTGTACAACTCAATGACACCTAAAGTAGTCGTTCAACTGATGGGCTTCACAAATGCCAAAGATCTGTCGTAA

Protein sequence

MANATPPNFSVLDTPATSFTNPPLNQILNQLTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDDREQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDLS*

Homology

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BLAST of MELO3C005075 vs. TrEMBL
Match: V7CEQ5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 35  KLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDDREQR 94
           KLD +NYLLW+T  LPI++G+KL+GH+ G KPCP +F+                      
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFL---------------------- 81

Query: 95  APKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
            P+    S++  P   NP FE+W++   LLLGWLY++M   +  QLM  +  K+L
Sbjct: 82  -PRTTPGSTVKIP---NPEFEEWVSNHQLLLGWLYSTMRTDIASQLMRNSTLKEL 110

[Close]

BLAST of MELO3C005075 vs. TrEMBL
Match: A0A151RKJ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 1


Query: 16  ATSFTNPPLNQILNQLTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTIT 75
           + S ++  L  IL+   +VKLDR NY LWK+L LP LKG+ L+G+L G   CP +F+   
Sbjct: 4   SNSSSSSNLKNILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYLFGTTKCPPEFI--- 63

Query: 76  SSAGSNGSITEEGDDREQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPK 135
                   I E G                      NP F  W +TD LLLGWL NSMT +
Sbjct: 64  --------IDETGKKN-------------------NPAFADWTSTDQLLLGWLINSMTQE 99

Query: 136 VVVQLM 142
           V  QL+
Sbjct: 124 VATQLL 99

[Close]

BLAST of MELO3C005075 vs. TrEMBL
Match: A0A151QNK8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 1


Query: 28  LNQLTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEE 87
           L  + +VKLDR NY LWK+L + I+KG +L+GH+ G K CPE+F+               
Sbjct: 13  LPSIVSVKLDRDNYPLWKSLVISIVKGCRLDGHMLGTKECPEEFIA-------------- 72

Query: 88  GDDREQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAK 147
                       ++ S   P   NP FE W   D  LLGWL NSMT ++  QL+    +K
Sbjct: 73  ------------SADSSKKP---NPAFENWQAHDSQLLGWLMNSMTIEMATQLLHCETSK 105

Query: 148 DL 150
            L
Sbjct: 133 QL 105

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BLAST of MELO3C005075 vs. TrEMBL
Match: A0A151R6N1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1


Query: 18  SFTNPPLNQILNQLTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSS 77
           S ++  L  IL+   ++KLDR NY LWK+L LP L+G+ L+G++ G    P++F+     
Sbjct: 6   SSSSSNLKNILSIPYSIKLDRGNYRLWKSLVLPSLRGHNLDGYIFGTTKYPQEFI----- 65

Query: 78  AGSNGSITEEGDDREQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVV 137
                 I E G                       P F  W +TD LLLGWL NSMT +V 
Sbjct: 66  ------IDETGKKN-------------------TPTFVYWTSTDQLLLGWLINSMTQEVT 107

Query: 138 VQLMGFTNAKDL 150
            QL+ +  ++ +
Sbjct: 126 TQLLHYETSQQI 107

[Close]

BLAST of MELO3C005075 vs. TrEMBL
Match: A0A0A0M380_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1


Query: 100 ASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
           ASSS S   ++N  FE+W+T DLLLLGWLYNS+TP+V VQL+GF NAKDL
Sbjct: 9   ASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDL 58

[Close]

BLAST of MELO3C005075 vs. NCBI nr
Match: gi|593787208|ref|XP_007156643.1| (hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris])

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 35  KLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDDREQR 94
           KLD +NYLLW+T  LPI++G+KL+GH+ G KPCP +F+                      
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFL---------------------- 81

Query: 95  APKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
            P+    S++  P   NP FE+W++   LLLGWLY++M   +  QLM  +  K+L
Sbjct: 82  -PRTTPGSTVKIP---NPEFEEWVSNHQLLLGWLYSTMRTDIASQLMRNSTLKEL 110

[Close]

BLAST of MELO3C005075 vs. NCBI nr
Match: gi|828335907|ref|XP_012575528.1| (PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum])

HSP 1 Score: 85.5 bits (210), Expect = 8.7e-14
Identity = 46/117 (39.32%), Postives = 59/117 (50.43%), Query Frame = 1


Query: 33  TVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDDRE 92
           +VKLDR NY LWK+L + I+KGY+L+GH+ G K CPEKF+  T S  +            
Sbjct: 18  SVKLDRDNYPLWKSLVISIVKGYRLDGHMLGTKECPEKFIASTDSIKNP----------- 77

Query: 93  QRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
                             NP FE W   D  LLGWL NSMT ++  QL+    +K L
Sbjct: 78  ------------------NPAFEDWQAHDSQLLGWLMNSMTTEMATQLLHCETSKQL 105

[Close]

BLAST of MELO3C005075 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1


Query: 33  TVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDDRE 92
           +VKLDR NYLLWK+L LP+++G KL+G++ G K CPE+F++   +   N           
Sbjct: 22  SVKLDRDNYLLWKSLVLPLIRGCKLDGYIIGTKECPEQFISTNDTTKKN----------- 81

Query: 93  QRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
                             NP +E+WI  D  LLGWL NS+   +  QL+    +K+L
Sbjct: 82  ------------------NPDYEEWIAHDQALLGWLRNSVAIDIATQLLHCETSKEL 109

[Close]

BLAST of MELO3C005075 vs. NCBI nr
Match: gi|1012331601|gb|KYP43069.1| (hypothetical protein KK1_035512 [Cajanus cajan])

HSP 1 Score: 82.4 bits (202), Expect = 7.4e-13
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 1


Query: 16  ATSFTNPPLNQILNQLTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTIT 75
           + S ++  L  IL+   +VKLDR NY LWK+L LP LKG+ L+G+L G   CP +F+   
Sbjct: 4   SNSSSSSNLKNILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYLFGTTKCPPEFI--- 63

Query: 76  SSAGSNGSITEEGDDREQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPK 135
                   I E G                      NP F  W +TD LLLGWL NSMT +
Sbjct: 64  --------IDETGKKN-------------------NPAFADWTSTDQLLLGWLINSMTQE 99

Query: 136 VVVQLM 142
           V  QL+
Sbjct: 124 VATQLL 99

[Close]

BLAST of MELO3C005075 vs. NCBI nr
Match: gi|828334685|ref|XP_012575223.1| (PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum])

HSP 1 Score: 82.4 bits (202), Expect = 7.4e-13
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 31  LTTVKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSITEEGDD 90
           + +VKLDR NY LWK+L + I+KGY+L G++ G K CPEKF   T S+ +          
Sbjct: 16  VVSVKLDRDNYPLWKSLVISIVKGYRLHGYMLGTKECPEKFTASTDSSKNP--------- 75

Query: 91  REQRAPKQIASSSMSAPAIINPLFEQWITTDLLLLGWLYNSMTPKVVVQLMGFTNAKDL 150
                               NP FE W   D  LLGWL NSMT ++  QL+    +K L
Sbjct: 76  --------------------NPAFEDWQAHDSQLLGWLMNSMTTEMATQLLHCETSKQL 105

The following BLAST results are available for this feature:

BLAST of MELO3C005075 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CEQ5_PHAVU	2.1e-14	38.26	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE...	[more]
A0A151RKJ3_CAJCA	5.1e-13	38.89	Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1	[more]
A0A151QNK8_CAJCA	2.5e-12	36.89	Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1	[more]
A0A151R6N1_CAJCA	1.1e-10	33.33	Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1	[more]
A0A0A0M380_CUCSA	1.1e-10	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1	[more]

BLAST of MELO3C005075 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593787208\|ref\|XP_007156643.1\|	3.0e-14	38.26	hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris]	[more]
gi\|828335907\|ref\|XP_012575528.1\|	8.7e-14	39.32	PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]	[more]
gi\|828332633\|ref\|XP_004513130.2\|	5.6e-13	35.90	PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum]	[more]
gi\|1012331601\|gb\|KYP43069.1\|	7.4e-13	38.89	hypothetical protein KK1_035512 [Cajanus cajan]	[more]
gi\|828334685\|ref\|XP_012575223.1\|	7.4e-13	37.82	PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005075T1	MELO3C005075T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005075	Cucumber (Chinese Long) v3	cucmeB352
MELO3C005075	Watermelon (97103) v2	mewmbB009
MELO3C005075	Watermelon (97103) v2	mewmbB019
MELO3C005075	Wax gourd	mewgoB017
MELO3C005075	Melon (DHL92) v3.5.1	memeB009
MELO3C005075	Cucurbita maxima (Rimu)	cmameB252
MELO3C005075	Cucurbita maxima (Rimu)	cmameB633
MELO3C005075	Cucurbita maxima (Rimu)	cmameB635
MELO3C005075	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005075	Cucurbita moschata (Rifu)	cmomeB623
MELO3C005075	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005075	Wild cucumber (PI 183967)	cpimeB356
MELO3C005075	Wild cucumber (PI 183967)	cpimeB577
MELO3C005075	Cucumber (Chinese Long) v2	cumeB084
MELO3C005075	Watermelon (Charleston Gray)	mewcgB019
MELO3C005075	Watermelon (Charleston Gray)	mewcgB022
MELO3C005075	Watermelon (97103) v1	mewmB032
MELO3C005075	Watermelon (97103) v1	mewmB037
MELO3C005075	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005075	Cucurbita pepo (Zucchini)	cpemeB357
MELO3C005075	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005075	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005075	Cucumber (Gy14) v2	cgybmeB295
MELO3C005075	Silver-seed gourd	carmeB0483
MELO3C005075	Silver-seed gourd	carmeB0821