MELO3C005021.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005021.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Ribosomal protein L5
Location	chr12 : 4486859 .. 4487191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGGGGTTCGATAGGAAAGTCCTTTCGATCCAATCAATTTTTTGAGTCAAATAAAGATAAAGGATATGTTAGTGATGTAGCACGAGAAAGCACTCTCCGAGGGCATGAAATGTCTAATTTTTCTTTCAAAGTCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCCGACCGAAATACAAGAAAACTCCATTCAATTCTCGATGGAATCGGAGTTTTTCAAATTTTTCCTAGAACTGACAGATCATTTGGAGATCTTCTCTAAGACTCTAAGGTTCAATGTGACTATTGTCAATTTTGCCAAGACAAAAGATGAGACTTTACCATTGTAA

mRNA sequence

ACAAGGGGTTCGATAGGAAAGTCCTTTCGATCCAATCAATTTTTTGAGTCAAATAAAGATAAAGGATATGTTAGTGATGTAGCACGAGAAAGCACTCTCCGAGGGCATGAAATGTCTAATTTTTCTTTCAAAGTCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCCGACCGAAATACAAGAAAACTCCATTCAATTCTCGATGGAATCGGAGTTTTTCAAATTTTTCCTAGAACTGACAGATCATTTGGAGATCTTCTCTAAGACTCTAAGGTTCAATGTGACTATTGTCAATTTTGCCAAGACAAAAGATGAGACTTTACCATTGTAA

Coding sequence (CDS)

ACAAGGGGTTCGATAGGAAAGTCCTTTCGATCCAATCAATTTTTTGAGTCAAATAAAGATAAAGGATATGTTAGTGATGTAGCACGAGAAAGCACTCTCCGAGGGCATGAAATGTCTAATTTTTCTTTCAAAGTCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCCGACCGAAATACAAGAAAACTCCATTCAATTCTCGATGGAATCGGAGTTTTTCAAATTTTTCCTAGAACTGACAGATCATTTGGAGATCTTCTCTAAGACTCTAAGGTTCAATGTGACTATTGTCAATTTTGCCAAGACAAAAGATGAGACTTTACCATTGTAA

Protein sequence

TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL

Homology

[Close]

BLAST of MELO3C005021.2 vs. NCBI nr
Match: AEN56134.1 (ribosomal protein L5 (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 179.5 bits (454), Expect = 6.3e-42
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGHEMSNFSFK+IIGIVMSFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNFSFKIIIGIVMSFLNSPAEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           +ENS++FSME+EFF+FF EL DH EIFSKTL FNVTIV  AKT+DETLP
Sbjct: 127 RENSMKFSMETEFFEFFPELADHFEIFSKTLGFNVTIVTSAKTQDETLP 175

[Close]

BLAST of MELO3C005021.2 vs. NCBI nr
Match: YP_004849341.1 (ribosomal protein L5 (mitochondrion) [Cucumis sativus] >ADZ10768.1 ribosomal protein L5 (mitochondrion) [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGH M +F FK+IIGIV+SFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFKIIIGIVLSFLNSPGEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ++NSIQF ME+EFF+FF EL DH EIFS TL F+VTIV  AKT+DETLP
Sbjct: 127 RKNSIQFPMETEFFEFFPELADHFEIFSNTLGFHVTIVTSAKTQDETLP 175

[Close]

BLAST of MELO3C005021.2 vs. NCBI nr
Match: AAP33159.1 (ribosomal protein L5 (mitochondrion) [Cucumis sativus] >AAP33161.1 ribosomal protein L5 (mitochondrion) [Cucumis sativus] >AAP33162.1 ribosomal protein L5 (mitochondrion) [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGH M +F FK+IIGIV+SFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFKIIIGIVLSFLNSPGEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           ++NSIQF ME+EFF+FF EL DH EIFS TL F+VTIV  AKT+DETL L
Sbjct: 127 RKNSIQFPMETEFFEFFPELADHFEIFSNTLGFHVTIVTSAKTQDETLLL 176

[Close]

BLAST of MELO3C005021.2 vs. NCBI nr
Match: AFY03535.1 (ribosomal protein L5, partial (mitochondrion) [Lagenaria siceraria])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 78/108 (72.22%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F ESNKDKGYVSD+AR+STLRGH MSNFS  V I  VMS L+SP EI+
Sbjct: 16  RGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFS--VRISTVMSLLDSPVEIR 75

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ENSIQFSME+EF +F  EL DH EIF   L FNVTIV  A T+DETLP
Sbjct: 76  ENSIQFSMETEFCEFSPELEDHFEIFEHILGFNVTIVTSANTQDETLP 121

[Close]

BLAST of MELO3C005021.2 vs. NCBI nr
Match: YP_002608355.1 (ribosomal protein L5 [Vitis vinifera] >CAQ77587.1 ribosomal protein L5 (mitochondrion) [Vitis vinifera] >ACS15246.1 ribosomal protein L5 (mitochondrion) [Vitis vinifera])

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 78/108 (72.22%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSNQF  SNKDKGYVSD+AR+STLRGH MSNFS  V I IVMS L+SP EI+
Sbjct: 66  RGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLRGHGMSNFS--VRISIVMSLLDSPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ENSIQFSME+EF +F  EL DH EIF     FNVTIV  A T+DETLP
Sbjct: 126 ENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLP 171

[Close]

BLAST of MELO3C005021.2 vs. TAIR10
Match: AT2G07725.1 (Ribosomal L5P family protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.5e-32
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F  SNKDKGYVSD+AR+STLRGH MSNFS  V I  VMS L+ P EI+
Sbjct: 66  RGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFS--VRISTVMSLLDFPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           +NSIQFSME+EF +F  EL DH EIF     FNVTI+  A T+DETLPL
Sbjct: 126 KNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPL 172

[Close]

BLAST of MELO3C005021.2 vs. TAIR10
Match: ATMG00210.1 (ribosomal protein L5)

HSP 1 Score: 134.0 bits (336), Expect = 5.5e-32
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F  SNKDKGYVSD+AR+STLRGH MSNFS  V I  VMS L+ P EI+
Sbjct: 66  RGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFS--VRISTVMSLLDFPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           +NSIQFSME+EF +F  EL DH EIF     FNVTI+  A T+DETLPL
Sbjct: 126 KNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPL 172

[Close]

BLAST of MELO3C005021.2 vs. Swiss-Prot
Match: sp|P49388|RM05_BRANA (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F  SNKDKGYVSD+AR+STLRGH MSNFS  V I  VMS L+ P EI+
Sbjct: 66  RGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFS--VRISTVMSLLDFPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           +NSIQFSME+EF +F  +L DH EIF     FNVTIV  A T+DETLPL
Sbjct: 126 KNSIQFSMETEFCEFAPQLQDHFEIFEHIRGFNVTIVTSANTQDETLPL 172

[Close]

BLAST of MELO3C005021.2 vs. Swiss-Prot
Match: sp|Q05492|RM05_OENBE (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-30
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F ESNKDKGYVSD+AR+S LRGH MSNF  +++   VMS L+S  EI+
Sbjct: 68  RGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVRIL--TVMSLLDSRVEIR 127

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           ENSIQFSME+EF +F  EL DH EIF    RFNVTIV  A T+DETL L
Sbjct: 128 ENSIQFSMETEFCEFSPELEDHFEIFEHIRRFNVTIVTSANTQDETLLL 174

[Close]

BLAST of MELO3C005021.2 vs. Swiss-Prot
Match: sp|P42793|RM05_ARATH (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-29
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F  SNKDKGYVSD+AR+STLRGH MSNF  +++   VMS L+ P EI+
Sbjct: 66  RGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRIL--TVMSLLDFPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           +NSIQFSME+EF +F  EL DH EIF     FNVTI+  A T+DETL L
Sbjct: 126 KNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLL 172

[Close]

BLAST of MELO3C005021.2 vs. Swiss-Prot
Match: sp|P51409|RM05_SOLTU (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 72/110 (65.45%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKD-KGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 61
           R S GKSFRSN F  SNKD KGYVSD+AR+STLRGH MS+  F V I  VMS L+SP EI
Sbjct: 66  RASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSH--FLVRISTVMSLLDSPLEI 125

Query: 62  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           +E SIQFSME+EF +F  EL DH EIF     FNVTIV  A T+DETL L
Sbjct: 126 RERSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLLL 173

[Close]

BLAST of MELO3C005021.2 vs. Swiss-Prot
Match: sp|P26860|RM05_MARPO (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFF---ESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSP 60
           +RGS GKSFR N+F    ES +D GYV+ +AR STLRGH M NF  K++   ++SF + P
Sbjct: 70  SRGSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNFLEKLV--TIISFYDYP 129

Query: 61  TEIQENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
            +IQ+NSIQ SM +   + F E+ DH EIF     F+VTIV  A T+DET+ L
Sbjct: 130 VKIQKNSIQLSMATSLLRLFPEIQDHFEIFEHIRGFDVTIVTSANTQDETVIL 179

[Close]

BLAST of MELO3C005021.2 vs. TrEMBL
Match: tr|G3EU44|G3EU44_CUCME (Ribosomal protein L5 OS=Cucumis melo subsp. melo OX=412675 GN=rpl5 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-42
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGHEMSNFSFK+IIGIVMSFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNFSFKIIIGIVMSFLNSPAEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           +ENS++FSME+EFF+FF EL DH EIFSKTL FNVTIV  AKT+DETLP
Sbjct: 127 RENSMKFSMETEFFEFFPELADHFEIFSKTLGFNVTIVTSAKTQDETLP 175

[Close]

BLAST of MELO3C005021.2 vs. TrEMBL
Match: tr|G3EIZ3|G3EIZ3_CUCSA (Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGH M +F FK+IIGIV+SFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFKIIIGIVLSFLNSPGEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ++NSIQF ME+EFF+FF EL DH EIFS TL F+VTIV  AKT+DETLP
Sbjct: 127 RKNSIQFPMETEFFEFFPELADHFEIFSNTLGFHVTIVTSAKTQDETLP 175

[Close]

BLAST of MELO3C005021.2 vs. TrEMBL
Match: tr|Q7Y6H0|Q7Y6H0_CUCSA (Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-37
Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   TRGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEI 60
           TRGS GKSFRSN F ESNKDKGYVSD+ARESTLRGH M +F FK+IIGIV+SFLNSP EI
Sbjct: 67  TRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFKIIIGIVLSFLNSPGEI 126

Query: 61  QENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLPL 111
           ++NSIQF ME+EFF+FF EL DH EIFS TL F+VTIV  AKT+DETL L
Sbjct: 127 RKNSIQFPMETEFFEFFPELADHFEIFSNTLGFHVTIVTSAKTQDETLLL 176

[Close]

BLAST of MELO3C005021.2 vs. TrEMBL
Match: tr|K7Z325|K7Z325_LAGSI (Ribosomal protein L5 (Fragment) OS=Lagenaria siceraria OX=3668 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.6e-31
Identity = 78/108 (72.22%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSN F ESNKDKGYVSD+AR+STLRGH MSNFS  V I  VMS L+SP EI+
Sbjct: 16  RGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFS--VRISTVMSLLDSPVEIR 75

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ENSIQFSME+EF +F  EL DH EIF   L FNVTIV  A T+DETLP
Sbjct: 76  ENSIQFSMETEFCEFSPELEDHFEIFEHILGFNVTIVTSANTQDETLP 121

[Close]

BLAST of MELO3C005021.2 vs. TrEMBL
Match: tr|B6VJT5|B6VJT5_VITVI (Ribosomal protein L5 OS=Vitis vinifera OX=29760 GN=rpl5 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 78/108 (72.22%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   RGSIGKSFRSNQFFESNKDKGYVSDVARESTLRGHEMSNFSFKVIIGIVMSFLNSPTEIQ 61
           RGS GKSFRSNQF  SNKDKGYVSD+AR+STLRGH MSNFS  V I IVMS L+SP EI+
Sbjct: 66  RGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLRGHGMSNFS--VRISIVMSLLDSPVEIR 125

Query: 62  ENSIQFSMESEFFKFFLELTDHLEIFSKTLRFNVTIVNFAKTKDETLP 110
           ENSIQFSME+EF +F  EL DH EIF     FNVTIV  A T+DETLP
Sbjct: 126 ENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLP 171

The following BLAST results are available for this feature:

BLAST of MELO3C005021.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56134.1	6.3e-42	83.49	ribosomal protein L5 (mitochondrion) [Cucumis melo subsp. melo]	[more]
YP_004849341.1	2.1e-37	77.06	ribosomal protein L5 (mitochondrion) [Cucumis sativus] >ADZ10768.1 ribosomal pro...	[more]
AAP33159.1	1.0e-36	76.36	ribosomal protein L5 (mitochondrion) [Cucumis sativus] >AAP33161.1 ribosomal pro...	[more]
AFY03535.1	1.4e-30	72.22	ribosomal protein L5, partial (mitochondrion) [Lagenaria siceraria]	[more]
YP_002608355.1	2.5e-30	72.22	ribosomal protein L5 [Vitis vinifera] >CAQ77587.1 ribosomal protein L5 (mitochon...	[more]

BLAST of MELO3C005021.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07725.1	5.5e-32	67.89	Ribosomal L5P family protein	[more]
ATMG00210.1	5.5e-32	67.89	ribosomal protein L5	[more]

BLAST of MELO3C005021.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49388\|RM05_BRANA	1.7e-30	67.89	60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S...	[more]
sp\|Q05492\|RM05_OENBE	3.8e-30	66.97	60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ...	[more]
sp\|P42793\|RM05_ARATH	5.4e-29	64.22	60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
sp\|P51409\|RM05_SOLTU	1.1e-26	65.45	60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=...	[more]
sp\|P26860\|RM05_MARPO	1.5e-18	50.44	60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5...	[more]

BLAST of MELO3C005021.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|G3EU44\|G3EU44_CUCME	4.1e-42	83.49	Ribosomal protein L5 OS=Cucumis melo subsp. melo OX=412675 GN=rpl5 PE=4 SV=1	[more]
tr\|G3EIZ3\|G3EIZ3_CUCSA	1.4e-37	77.06	Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=4 SV=1	[more]
tr\|Q7Y6H0\|Q7Y6H0_CUCSA	6.8e-37	76.36	Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=4 SV=1	[more]
tr\|K7Z325\|K7Z325_LAGSI	9.6e-31	72.22	Ribosomal protein L5 (Fragment) OS=Lagenaria siceraria OX=3668 PE=4 SV=1	[more]
tr\|B6VJT5\|B6VJT5_VITVI	1.6e-30	72.22	Ribosomal protein L5 OS=Vitis vinifera OX=29760 GN=rpl5 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR022803	Ribosomal_L5_dom_sf
IPR002132	Ribosomal_L5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005021.2.1	MELO3C005021.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11994:SF11	60S RIBOSOMAL PROTEIN L5, MITOCHONDRIAL	coord: 2..110
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 2..110
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	SSF55282	RL5-like	coord: 27..108

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005021.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C005021.2	Cucumber (Gy14) v1	cgymedB371
MELO3C005021.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C005021.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C005021.2	Cucurbita maxima (Rimu)	cmamedB640
MELO3C005021.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C005021.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C005021.2	Cucurbita moschata (Rifu)	cmomedB628
MELO3C005021.2	Cucurbita pepo (Zucchini)	cpemedB314
MELO3C005021.2	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C005021.2	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C005021.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C005021.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C005021.2	Melon (DHL92) v3.6.1	medmedB034
MELO3C005021.2	Bottle gourd (USVL1VR-Ls)	lsimedB064
MELO3C005021.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C005021.2	Watermelon (Charleston Gray)	medwcgB140
MELO3C005021.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C005021.2	Watermelon (97103) v1	medwmB143
MELO3C005021.2	Watermelon (97103) v1	medwmB174
MELO3C005021.2	Silver-seed gourd	carmedB0451
MELO3C005021.2	Silver-seed gourd	carmedB0734
MELO3C005021.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C005021.2	Watermelon (97103) v2	medwmbB142
MELO3C005021.2	Watermelon (97103) v2	medwmbB140
MELO3C005021.2	Wax gourd	medwgoB156
MELO3C005021.2	Wax gourd	medwgoB169