MELO3C005010.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C005010.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionACT11D09.5
Locationchr12 : 4676471 .. 4676947 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG

mRNA sequence

ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG

Coding sequence (CDS)

ATGTTTGGAAAAGACTACACGATAAAGGCCCATGCGGAGATGTTTAGAGACATCGGGTGCAACATGTTAGGACCCAACGACGGTGTCCCCGCAGAGGATGGCTTAGAGATGGAGTTAATGGCTATGTACAGTCTGAGGATGAACATGTCATCAAACGACATGATGGCCAGTCGTTTTGGTCAGTCCAACTATGCTAGGTCGAGCTCTAATGGTCAGAAAAGGAAGCGCGACATGCAGCCGTTTGAGACTTATGATCTTAATCGGGATGCCATGGACGCTGCAAATGATCAGATTAGAATCATTGCTAAATGGCCTGATAGAGCTATCCATCGAGAGGATGCGATGGTGCGGGAAGTCATTACGCATATAGAGTTTATTCCGGGCCTTAGTATGGAGGACATCAGTAAATGCGTGATGATAGTGACAGAGAAGGTATTGCTAATGAGAAGCTTCATCAAGATGCCCGATTCGATGTAG

Protein sequence

MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM
Homology
[Close]
BLAST of MELO3C005010.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 55/160 (34.38%), Postives = 91/160 (56.88%), Query Frame = 0 

Query: 1   MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
           +FGKD      AE F DIG N     D   A+   + +   MYS  +NMS +D+M +R  
Sbjct: 487 VFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTA 546

Query: 61  QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMV--RE 120
           + +  R+ S+G KRKR     ++ D+ R A++  N+Q+  IA+WP   + R+DA    +E
Sbjct: 547 RVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWP--ILQRQDATQTRQE 606

Query: 121 VITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
           ++ H+E IP L++ D  + + I+   V  M++F+++PD M
Sbjct: 607 IVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHM 644

[Close]
BLAST of MELO3C005010.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-14
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 0 

Query: 1   MFGKDYTIKAHAEMFRDIGCNMLGP-NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRF 60
           +FGKD    A +E F ++G N+    ND +P  D  + ++  MYS  ++MS ++M   R 
Sbjct: 135 VFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRA 194

Query: 61  GQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREV 120
           GQ++  R+ S+  KRKR  + +ET ++ R  M+  N+Q++ IA WP      E  M  +V
Sbjct: 195 GQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQV 254

Query: 121 ITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
           +  ++ IP L  +D +K + I+   +  +  F+ +P  +
Sbjct: 255 VKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C005010.2 vs. NCBI nr
Match: XP_004148199.2 (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-09
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0 

Query: 13  EMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQ 72
           E F D+G N+     G P EDG  ME+  MY   +NMS  D+M +R  +S+  R+ S+  
Sbjct: 177 ETFIDVGSNVSDEYKGFPTEDGNNMEIPTMYCQGLNMSPEDIMDTRPSRSSECRTGSSRS 236

Query: 73  KRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVI 121
           KRKR  Q  ET ++   AM+ ANDQ++ IA+  + A   E A   +V+
Sbjct: 237 KRKRRGQDVETMEVTCSAMEYANDQLKAIAECQNLARQDESATRSKVV 284

[Close]
BLAST of MELO3C005010.2 vs. NCBI nr
Match: KGN66659.1 (hypothetical protein Csa_1G654880 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 0 

Query: 4   KDYTIKAHAEMFRDIGCNMLGP-NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQS 63
           KD   +   E+F DI  N+    NDGVP  D  +  ++ MYS  M+MSS++M+ +  GQ+
Sbjct: 25  KDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQT 84

Query: 64  NYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIR 100
           +  R++SNG KRK+  Q +E  ++ R+AM+ AND ++
Sbjct: 85  SEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 121

[Close]
BLAST of MELO3C005010.2 vs. NCBI nr
Match: ADN33753.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 0 

Query: 26  NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYD 85
           NDGVP  D  + ++  MYS  ++M SN+M   R  Q++  R+ S+G KRK+  + +E  +
Sbjct: 3   NDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMVE 62

Query: 86  LNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKV 145
           + + AM+  NDQ++    W       E  +  EV+  ++ IP L   D +K + I+   V
Sbjct: 63  VIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFRSV 122

Query: 146 LLMRSF 152
             +  F
Sbjct: 123 EAIEGF 128

[Close]
BLAST of MELO3C005010.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 55/160 (34.38%), Postives = 91/160 (56.88%), Query Frame = 0 

Query: 1   MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
           +FGKD      AE F DIG N     D   A+   + +   MYS  +NMS +D+M +R  
Sbjct: 487 VFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTA 546

Query: 61  QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMV--RE 120
           + +  R+ S+G KRKR     ++ D+ R A++  N+Q+  IA+WP   + R+DA    +E
Sbjct: 547 RVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWP--ILQRQDATQTRQE 606

Query: 121 VITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
           ++ H+E IP L++ D  + + I+   V  M++F+++PD M
Sbjct: 607 IVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHM 644

[Close]
BLAST of MELO3C005010.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 0 

Query: 1   MFGKDYTIKAHAEMFRDIGCNMLGP-NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRF 60
           +FGKD    A +E F ++G N+    ND +P  D  + ++  MYS  ++MS ++M   R 
Sbjct: 135 VFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRA 194

Query: 61  GQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDAMVREV 120
           GQ++  R+ S+  KRKR  + +ET ++ R  M+  N+Q++ IA WP      E  M  +V
Sbjct: 195 GQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQV 254

Query: 121 ITHIEFIPGLSMEDISKCVMIVTEKVLLMRSFIKMPDSM 159
           +  ++ IP L  +D +K + I+   +  +  F+ +P  +
Sbjct: 255 VKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTEL 293

[Close]
BLAST of MELO3C005010.2 vs. TrEMBL
Match: tr|A0A0A0M036|A0A0A0M036_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654880 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 0 

Query: 4   KDYTIKAHAEMFRDIGCNMLGP-NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQS 63
           KD   +   E+F DI  N+    NDGVP  D  +  ++ MYS  M+MSS++M+ +  GQ+
Sbjct: 25  KDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQT 84

Query: 64  NYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIR 100
           +  R++SNG KRK+  Q +E  ++ R+AM+ AND ++
Sbjct: 85  SEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 121

[Close]
BLAST of MELO3C005010.2 vs. TrEMBL
Match: tr|E5GBB1|E5GBB1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 0 

Query: 26  NDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYD 85
           NDGVP  D  + ++  MYS  ++M SN+M   R  Q++  R+ S+G KRK+  + +E  +
Sbjct: 3   NDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMVE 62

Query: 86  LNRDAMDAANDQIRIIAKWPDRAIHREDAMVREVITHIEFIPGLSMEDISKCVMIVTEKV 145
           + + AM+  NDQ++    W       E  +  EV+  ++ IP L   D +K + I+   V
Sbjct: 63  VIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFRSV 122

Query: 146 LLMRSF 152
             +  F
Sbjct: 123 EAIEGF 128

[Close]
BLAST of MELO3C005010.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 1   MFGKDYTIKAHAEMFRDIGCNMLGPNDGVPAEDGLEMELMAMYSLRMNMSSNDMMASRFG 60
           +FGKD      AE+F DIG N     D   A+   +     MYS R+NMS +D+M +R  
Sbjct: 123 VFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYSPRLNMSPDDLMETRTA 182

Query: 61  QSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPDRAIHREDA 115
           + +  R+ S+G +RK      ++ D+   A+   N+Q+  IA+WP   + R+DA
Sbjct: 183 RVSERRNVSSGSRRKHTGHATDSGDIVCTAIVYGNEQLHRIAEWP--ILQRQDA 234

The following BLAST results are available for this feature:
BLAST of MELO3C005010.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34114.12.7e-1434.38retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.14.7e-1430.82PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_004148199.27.7e-0938.89PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
KGN66659.12.9e-0839.18hypothetical protein Csa_1G654880 [Cucumis sativus][more]
ADN33753.18.5e-0830.95hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C005010.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C005010.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C005010.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCB5|E5GCB5_CUCME1.8e-1434.38Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME3.1e-1430.82uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A0A0M036|A0A0A0M036_CUCSA1.9e-0839.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654880 PE=4 SV=1[more]
tr|E5GBB1|E5GBB1_CUCME5.6e-0830.95Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME2.8e-0734.21uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005010.2.1MELO3C005010.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C005010.2Cucumber (Gy14) v2cgybmedB009
MELO3C005010.2Cucumber (Gy14) v1cgymedB371
MELO3C005010.2Cucurbita maxima (Rimu)cmamedB215
MELO3C005010.2Cucurbita maxima (Rimu)cmamedB451
MELO3C005010.2Cucurbita maxima (Rimu)cmamedB640
MELO3C005010.2Cucurbita moschata (Rifu)cmomedB203
MELO3C005010.2Cucurbita moschata (Rifu)cmomedB439
MELO3C005010.2Cucurbita moschata (Rifu)cmomedB628
MELO3C005010.2Cucurbita pepo (Zucchini)cpemedB314
MELO3C005010.2Cucurbita pepo (Zucchini)cpemedB581
MELO3C005010.2Wild cucumber (PI 183967)cpimedB011
MELO3C005010.2Cucumber (Chinese Long) v2cumedB010
MELO3C005010.2Melon (DHL92) v3.6.1medmedB034
MELO3C005010.2Bottle gourd (USVL1VR-Ls)lsimedB064
MELO3C005010.2Bottle gourd (USVL1VR-Ls)lsimedB183
MELO3C005010.2Watermelon (Charleston Gray)medwcgB140
MELO3C005010.2Watermelon (Charleston Gray)medwcgB141
MELO3C005010.2Watermelon (97103) v1medwmB143
MELO3C005010.2Watermelon (97103) v1medwmB174
MELO3C005010.2Silver-seed gourdcarmedB0451
MELO3C005010.2Cucumber (Chinese Long) v3cucmedB009
MELO3C005010.2Watermelon (97103) v2medwmbB142
MELO3C005010.2Watermelon (97103) v2medwmbB140
MELO3C005010.2Wax gourdmedwgoB156
MELO3C005010.2Wax gourdmedwgoB176