MELO3C004976.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004976.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr12 : 5237771 .. 5238268 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAGATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGGTATGCTATTCCTTATCTTGTCCCTTTGCTCGTTTATAATAAAAAATAAACTAACACGTTAACTCAACACTTGAACAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACGACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGACGATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA

mRNA sequence

ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAGATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACGACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGACGATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA

Coding sequence (CDS)

ATGCTAGGTCGTAACATCCTTGCTACGACTATTGATAGTCATATAAAAATGCTAAAGAGAAGGTTCCATGCTATATCCGCGATGCAGGGCCCGTTTTACAGTAGTTTTAGATGGAACGATGAACTGAAGTGCATTATTATAGAGAAGGATGTGTTCGACGATTGGGTGAAGAGTCATTCTATTGTGAAGGGCCTACTAAACATATTATTTCCCCATTACGACGAACTTTCCTACATCTTTGGGAGAGATTGTGTGATGAGAGGGCGTGTGGAGACATTCGCCAATGTCGGGTCGAATGTGCCTGAAGGGTATAGAGGATTTCCCGCTGACGATGGCAACGATATGGAGATCCCTAGTATGTTCATTCAGGGACTAGACATGATGCCTGACAAAATAATGGGCACTCTACTCGACAAGTAA

Protein sequence

MLGRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIVKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFIQGLDMMPDKIMGTLLDK

Homology

[Close]

BLAST of MELO3C004976.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH   
Sbjct: 54  GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTA 113

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E+FA++GSN P GY  F AD   D + P M+ 
Sbjct: 114 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYS 173

Query: 123 QGLDMMPDKIMGT 136
             L+M PD +M T
Sbjct: 174 LRLNMSPDDLMET 186

[Close]

BLAST of MELO3C004976.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 156.4 bits (394), Expect = 7.2e-35
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDW  SH   
Sbjct: 413 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAA 472

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E+FA++GSN P GY    AD   D + P M+ 
Sbjct: 473 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 532

Query: 123 QGLDMMPDKIMGT 136
            GL+M PD +M T
Sbjct: 533 PGLNMSPDDLMET 543

[Close]

BLAST of MELO3C004976.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 68/134 (50.75%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 3   GRNIL-ATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSI 62
           G NI  ++TID H+K LK+ +HAI+ M+GP  S F WN+E +CII E+D+FD W+KSH  
Sbjct: 58  GTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPA 117

Query: 63  VKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRG-FPADDGNDMEIPSM 122
            KGLL+  FP+YD+LSY+FG+D     R ETF NVGSNV   +    P  D +D +IP+M
Sbjct: 118 AKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTM 177

Query: 123 FIQGLDMMPDKIMG 135
           + QG+ M PD++ G
Sbjct: 178 YSQGVHMSPDEMFG 191

[Close]

BLAST of MELO3C004976.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK+LKR FHA++ M+GP  S F WNDE KCI+ EK+       SH   
Sbjct: 54  GCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE-------SHPAA 113

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E FA++GSN P GY  F AD   D     M+ 
Sbjct: 114 KGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYS 173

Query: 123 QGLDMMPDKIMGT 136
             L+M PD +M T
Sbjct: 174 PRLNMSPDDLMET 179

[Close]

BLAST of MELO3C004976.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 3   GRNILATT-IDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSI 62
           G  + ATT ID  IK LKR F AI+ M GP  S F WNDE KCI+ EK++FD+WV+S   
Sbjct: 375 GCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPA 434

Query: 63  VKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVP-EGYRGFPADDGNDMEIPSM 122
            KGLLN  FP+YDEL+Y+FGRD       ETFA+VGSN P  GY  F   DGN+ + P +
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPV 494

Query: 123 FIQGLDMMPDKI 133
           + +G+D++ D +
Sbjct: 495 YSRGVDILQDDV 505

[Close]

BLAST of MELO3C004976.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-37
Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDWVKSH   
Sbjct: 54  GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTA 113

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E+FA++GSN P GY  F AD   D + P M+ 
Sbjct: 114 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYS 173

Query: 123 QGLDMMPDKIMGT 136
             L+M PD +M T
Sbjct: 174 LRLNMSPDDLMET 186

[Close]

BLAST of MELO3C004976.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.7e-35
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK++KR FHA++ M+GP  S F WNDE KCI+ EK+VFDDW  SH   
Sbjct: 413 GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAA 472

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E+FA++GSN P GY    AD   D + P M+ 
Sbjct: 473 KGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYS 532

Query: 123 QGLDMMPDKIMGT 136
            GL+M PD +M T
Sbjct: 533 PGLNMSPDDLMET 543

[Close]

BLAST of MELO3C004976.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 68/134 (50.75%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 3   GRNIL-ATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSI 62
           G NI  ++TID H+K LK+ +HAI+ M+GP  S F WN+E +CII E+D+FD W+KSH  
Sbjct: 58  GTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPA 117

Query: 63  VKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRG-FPADDGNDMEIPSM 122
            KGLL+  FP+YD+LSY+FG+D     R ETF NVGSNV   +    P  D +D +IP+M
Sbjct: 118 AKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTM 177

Query: 123 FIQGLDMMPDKIMG 135
           + QG+ M PD++ G
Sbjct: 178 YSQGVHMSPDEMFG 191

[Close]

BLAST of MELO3C004976.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 3   GRNILATTIDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSIV 62
           G NI A+TIDS IK+LKR FHA++ M+GP  S F WNDE KCI+ EK+       SH   
Sbjct: 54  GCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE-------SHPAA 113

Query: 63  KGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVPEGYRGFPADDGNDMEIPSMFI 122
           KGLLN  F HYDELSY+FG+D    GR E FA++GSN P GY  F AD   D     M+ 
Sbjct: 114 KGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYS 173

Query: 123 QGLDMMPDKIMGT 136
             L+M PD +M T
Sbjct: 174 PRLNMSPDDLMET 179

[Close]

BLAST of MELO3C004976.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-28
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 3   GRNILATT-IDSHIKMLKRRFHAISAMQGPFYSSFRWNDELKCIIIEKDVFDDWVKSHSI 62
           G  + ATT ID  IK LKR F AI+ M GP  S F WNDE KCI+ EK++FD+WV+S   
Sbjct: 375 GCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPA 434

Query: 63  VKGLLNILFPHYDELSYIFGRDCVMRGRVETFANVGSNVP-EGYRGFPADDGNDMEIPSM 122
            KGLLN  FP+YDEL+Y+FGRD       ETFA+VGSN P  GY  F   DGN+ + P +
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPV 494

Query: 123 FIQGLDMMPDKI 133
           + +G+D++ D +
Sbjct: 495 YSRGVDILQDDV 505

The following BLAST results are available for this feature:

BLAST of MELO3C004976.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466949.1	1.5e-37	57.89	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]
ADN34114.1	7.2e-35	56.39	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_008441954.1	2.6e-32	50.75	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]	[more]
XP_008459131.1	1.5e-29	52.63	PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo]	[more]
ADN33754.1	1.1e-27	51.52	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C004976.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004976.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004976.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CTN6\|A0A1S3CTN6_CUCME	1.0e-37	57.89	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
tr\|E5GCB5\|E5GCB5_CUCME	4.7e-35	56.39	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3B4L3\|A0A1S3B4L3_CUCME	1.7e-32	50.75	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
tr\|A0A1S3C8Z4\|A0A1S3C8Z4_CUCME	1.0e-29	52.63	uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=...	[more]
tr\|E5GBB2\|E5GBB2_CUCME	7.3e-28	51.52	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004976.2.1	MELO3C004976.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 11..96
None	No IPR available	PANTHER	PTHR31704:SF62	SUBFAMILY NOT NAMED	coord: 11..96

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004976.2	Wax gourd	medwgoB176
MELO3C004976.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004976.2	Cucumber (Gy14) v1	cgymedB371
MELO3C004976.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004976.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C004976.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004976.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C004976.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004976.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004976.2	Bottle gourd (USVL1VR-Ls)	lsimedB259
MELO3C004976.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C004976.2	Watermelon (97103) v1	medwmB143
MELO3C004976.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004976.2	Watermelon (97103) v2	medwmbB142