MELO3C004964.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004964.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionZinc finger, RING-type
Locationchr12 : 5588771 .. 5588992 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTGGATCGATTTTGCAGGAAAAGTCTGACGCTGCAGCCAAAGAAGCAGATACAACGAAAGCAGCTTGGCTTTGTCGAGTTTGTTTGACTTCCGAGGTAGAAATAACCATAGTACCTTGTGGCCATGTTTTGTGCCACAAGTGTTCTTCTGCTATTTTAAAGTGCCAATTTTTTCGACTTAAAGTTTCAAAAATCATGAGAATATTTCGACCTTGA

mRNA sequence

ATGGTTTCTGGATCGATTTTGCAGGAAAAGTCTGACGCTGCAGCCAAAGAAGCAGATACAACGAAAGCAGCTTGGCTTTGTCGAGTTTGTTTGACTTCCGAGGTAGAAATAACCATAGTACCTTGTGGCCATGTTTTGTGCCACAAGTGTTCTTCTGCTATTTTAAAGTGCCAATTTTTTCGACTTAAAGTTTCAAAAATCATGAGAATATTTCGACCTTGA

Coding sequence (CDS)

ATGGTTTCTGGATCGATTTTGCAGGAAAAGTCTGACGCTGCAGCCAAAGAAGCAGATACAACGAAAGCAGCTTGGCTTTGTCGAGTTTGTTTGACTTCCGAGGTAGAAATAACCATAGTACCTTGTGGCCATGTTTTGTGCCACAAGTGTTCTTCTGCTATTTTAAAGTGCCAATTTTTTCGACTTAAAGTTTCAAAAATCATGAGAATATTTCGACCTTGA

Protein sequence

MVSGSILQEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKIMRIFRP
Homology
[Close]
BLAST of MELO3C004964.2 vs. NCBI nr
Match: XP_008461369.1 (PREDICTED: sacsin isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4697 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4756

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4757 MRIFRP 4762

[Close]
BLAST of MELO3C004964.2 vs. NCBI nr
Match: XP_008461370.1 (PREDICTED: sacsin isoform X2 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4357 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4416

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4417 MRIFRP 4422

[Close]
BLAST of MELO3C004964.2 vs. NCBI nr
Match: XP_011659423.1 (PREDICTED: sacsin isoform X1 [Cucumis sativus] >KGN45079.1 hypothetical protein Csa_7G420720 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4697 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4756

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4757 MRIFRP 4762

[Close]
BLAST of MELO3C004964.2 vs. NCBI nr
Match: XP_011659424.1 (PREDICTED: sacsin isoform X2 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4357 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4416

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4417 MRIFRP 4422

[Close]
BLAST of MELO3C004964.2 vs. NCBI nr
Match: XP_022155038.1 (sacsin isoform X1 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 3.0e-24
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QE+SDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCS+A+ KC F RLKVSKI
Sbjct: 4697 QERSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSAAVSKCPFCRLKVSKI 4756

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4757 MRIFRP 4762

[Close]
BLAST of MELO3C004964.2 vs. TAIR10
Match: AT5G23110.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-19
Identity = 38/66 (57.58%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QE+++A+ KEA+T K+ WLC++C T EVE+TIVPCGHVLC  CS+++ +C F RL+V++ 
Sbjct: 4641 QERAEASMKEAETAKSQWLCQICQTKEVEVTIVPCGHVLCRHCSTSVSRCPFCRLQVNRT 4700

Query: 68   MRIFRP 74
            +RIFRP
Sbjct: 4701 IRIFRP 4706

[Close]
BLAST of MELO3C004964.2 vs. TAIR10
Match: AT1G73950.1 (Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 44.3 bits (103), Expect = 3.8e-05
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 26  LCRVCLTSEVEITIVPCGH-VLCHKCSSAILKCQFFRLKVSKIMRIF 72
           LCRVC   E+ + ++PC H VLC  CS    KC F R+ + + + ++
Sbjct: 418 LCRVCFEREISVVLLPCRHRVLCRNCSDKCKKCPFCRITIEERLPVY 464

[Close]
BLAST of MELO3C004964.2 vs. TrEMBL
Match: tr|A0A1S3CEI3|A0A1S3CEI3_CUCME (sacsin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499971 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4357 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4416

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4417 MRIFRP 4422

[Close]
BLAST of MELO3C004964.2 vs. TrEMBL
Match: tr|A0A1S3CEJ7|A0A1S3CEJ7_CUCME (sacsin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499971 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4697 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4756

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4757 MRIFRP 4762

[Close]
BLAST of MELO3C004964.2 vs. TrEMBL
Match: tr|A0A0A0K875|A0A0A0K875_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420720 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEKSDAAAKEADT KAAWLCRVCLTSEVEITIVPCGHVLC KCSSA+ KC F RLKVSKI
Sbjct: 4697 QEKSDAAAKEADTAKAAWLCRVCLTSEVEITIVPCGHVLCRKCSSAVSKCPFCRLKVSKI 4756

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4757 MRIFRP 4762

[Close]
BLAST of MELO3C004964.2 vs. TrEMBL
Match: tr|M5XVG6|M5XVG6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G347000 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-22
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEK+D AAKEADT KAAWLCRVCLT+EV+ITIVPCGHVLC +CSSA+ +C F RL+VSK 
Sbjct: 4709 QEKADVAAKEADTAKAAWLCRVCLTAEVDITIVPCGHVLCRRCSSAVSRCPFCRLQVSKT 4768

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4769 MRIFRP 4774

[Close]
BLAST of MELO3C004964.2 vs. TrEMBL
Match: tr|W9QVI6|W9QVI6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018092 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 8    QEKSDAAAKEADTTKAAWLCRVCLTSEVEITIVPCGHVLCHKCSSAILKCQFFRLKVSKI 67
            QEK+D AAKEA++ KAAWLCRVCLT+EV+ITIVPCGHVLC +CSSA+ +C F RL+VSK 
Sbjct: 4690 QEKADVAAKEAESAKAAWLCRVCLTAEVDITIVPCGHVLCRRCSSAVSRCPFCRLQVSKT 4749

Query: 68   MRIFRP 74
            MRIFRP
Sbjct: 4750 MRIFRP 4755

The following BLAST results are available for this feature:
BLAST of MELO3C004964.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461369.16.0e-2590.91PREDICTED: sacsin isoform X1 [Cucumis melo][more]
XP_008461370.16.0e-2590.91PREDICTED: sacsin isoform X2 [Cucumis melo][more]
XP_011659423.16.0e-2590.91PREDICTED: sacsin isoform X1 [Cucumis sativus] >KGN45079.1 hypothetical protein ... [more]
XP_011659424.16.0e-2590.91PREDICTED: sacsin isoform X2 [Cucumis sativus][more]
XP_022155038.13.0e-2487.88sacsin isoform X1 [Momordica charantia][more]
BLAST of MELO3C004964.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23110.12.1e-1957.58Zinc finger, C3HC4 type (RING finger) family protein[more]
AT1G73950.13.8e-0538.30Transmembrane Fragile-X-F-associated protein[more]
BLAST of MELO3C004964.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C004964.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CEI3|A0A1S3CEI3_CUCME4.0e-2590.91sacsin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499971 PE=4 SV=1[more]
tr|A0A1S3CEJ7|A0A1S3CEJ7_CUCME4.0e-2590.91sacsin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499971 PE=4 SV=1[more]
tr|A0A0A0K875|A0A0A0K875_CUCSA4.0e-2590.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420720 PE=4 SV=1[more]
tr|M5XVG6|M5XVG6_PRUPE7.0e-2278.79Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G347000 PE=4 SV=1[more]
tr|W9QVI6|W9QVI6_9ROSA6.0e-2175.76Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018092 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004964.2.1MELO3C004964.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 26..57
e-value: 3.0E-8
score: 33.3
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 24..65
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 3..72
e-value: 6.1E-14
score: 53.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 27..61
score: 9.155

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004964.2Watermelon (97103) v2medwmbB142
MELO3C004964.2Wax gourdmedwgoB176
MELO3C004964.2Cucumber (Gy14) v2cgybmedB009
MELO3C004964.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004964.2Cucurbita maxima (Rimu)cmamedB451
MELO3C004964.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004964.2Cucurbita moschata (Rifu)cmomedB439
MELO3C004964.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C004964.2Cucurbita pepo (Zucchini)cpemedB583
MELO3C004964.2Wild cucumber (PI 183967)cpimedB011
MELO3C004964.2Cucumber (Chinese Long) v2cumedB010
MELO3C004964.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004964.2Watermelon (Charleston Gray)medwcgB141
MELO3C004964.2Watermelon (97103) v1medwmB143
MELO3C004964.2Silver-seed gourdcarmedB0452
MELO3C004964.2Silver-seed gourdcarmedB1052
MELO3C004964.2Cucumber (Chinese Long) v3cucmedB009