MELO3C004956 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004956
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProtein with domains of unknown function (DUF26 and DUF1204)
Locationchr12 : 5761576 .. 5761785 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAGGCGATCATGAAAACAGTTGTCCACAACATTTTCGACGACAACAAAGAGGATGACCCTGAAGATACCAGAATTTCTTCAGATTCATCTGTCAACAATATCGATTCTGATAATGATCTATATTACAACTTTGATATTTTCGACCCCTATTTGGATTCCCAACCAGGATAA

mRNA sequence

ATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAGGCGATCATGAAAACAGTTGTCCACAACATTTTCGACGACAACAAAGAGGATGACCCTGAAGATACCAGAATTTCTTCAGATTCATCTGTCAACAATATCGATTCTGATAATGATCTATATTACAACTTTGATATTTTCGACCCCTATTTGGATTCCCAACCAGGATAA

Coding sequence (CDS)

ATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAGGCGATCATGAAAACAGTTGTCCACAACATTTTCGACGACAACAAAGAGGATGACCCTGAAGATACCAGAATTTCTTCAGATTCATCTGTCAACAATATCGATTCTGATAATGATCTATATTACAACTTTGATATTTTCGACCCCTATTTGGATTCCCAACCAGGATAA

Protein sequence

MTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVNNIDSDNDLYYNFDIFDPYLDSQPG*
Homology
[Close]
BLAST of MELO3C004956 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 

Query: 1   MTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVNNIDSDNDLYYNFDIF 60
           MT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  N+ID DND YYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  DPYLDS 67
           DPY DS
Sbjct: 134 DPYFDS 139

[Close]
BLAST of MELO3C004956 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-19
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 

Query: 1   MTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVNNIDSDNDLYYNFDIF 60
           MT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  N+ID DND YYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  DPYLDS 67
           DPY DS
Sbjct: 134 DPYFDS 139

The following BLAST results are available for this feature:
BLAST of MELO3C004956 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXT5_CUCSA2.9e-1972.73Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1[more]
BLAST of MELO3C004956 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198501|gb|KGN53659.1|4.2e-1972.73hypothetical protein Csa_4G097660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004956T1MELO3C004956T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004956Wax gourdmewgoB174
MELO3C004956Cucumber (Gy14) v1cgymeB486
MELO3C004956Cucurbita maxima (Rimu)cmameB194
MELO3C004956Cucurbita maxima (Rimu)cmameB391
MELO3C004956Cucurbita moschata (Rifu)cmomeB181
MELO3C004956Cucurbita moschata (Rifu)cmomeB382
MELO3C004956Wild cucumber (PI 183967)cpimeB011
MELO3C004956Cucumber (Chinese Long) v2cumeB015
MELO3C004956Cucumber (Chinese Long) v2cumeB186
MELO3C004956Watermelon (Charleston Gray)mewcgB149
MELO3C004956Watermelon (97103) v1mewmB146
MELO3C004956Cucurbita pepo (Zucchini)cpemeB480
MELO3C004956Cucurbita pepo (Zucchini)cpemeB490
MELO3C004956Bottle gourd (USVL1VR-Ls)lsimeB244
MELO3C004956Cucumber (Gy14) v2cgybmeB010
MELO3C004956Silver-seed gourdcarmeB0449
MELO3C004956Silver-seed gourdcarmeB1038
MELO3C004956Cucumber (Chinese Long) v3cucmeB010
MELO3C004956Watermelon (97103) v2mewmbB153