MELO3C004924.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004924.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12 : 6737611 .. 6737961 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

mRNA sequence

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

Coding sequence (CDS)

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

Protein sequence

MADLNFSDETLIPHPSSSHNPEVLPTSTMNSPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLAWIRNKT

Homology

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BLAST of MELO3C004924.2 vs. NCBI nr
Match: XP_011649121.1 (PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 25  PTSTMNSPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMI 84
           P +  N  +  +   +Q S + ++ YLNPYFLHHNDNT+LVLV E L EENYVSWSRAM 
Sbjct: 13  PKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMT 72

Query: 85  FELSIKNKISLMDVTLPRPPSDMLLAWIRN 115
             LS+KNKI  +D T+ RP  D+L  WIRN
Sbjct: 73  IGLSVKNKIGFVDGTIARPTGDLLPVWIRN 102

[Close]

BLAST of MELO3C004924.2 vs. NCBI nr
Match: XP_022156861.1 (uncharacterized protein LOC111023702 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-15
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 31  SPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIK 90
           SP + +  +S  + +   + LNPY+LHH DNT LV VN+LL E+NY SWSR+M+  LS+K
Sbjct: 18  SPESSSSPVSSSTLSGDASVLNPYYLHHTDNTGLVFVNQLLTEDNYTSWSRSMMIVLSVK 77

Query: 91  NKISLMDVTLPRPPSDMLLAWIRN 115
           NK+  +D  +PRP  D+L AWI N
Sbjct: 78  NKLDFIDGFIPRPSGDLLPAWIDN 101

[Close]

BLAST of MELO3C004924.2 vs. NCBI nr
Match: XP_011650144.1 (PREDICTED: uncharacterized protein LOC105434731 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 45  NPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPP 104
           +P++ Y NP+ +HHNDN+SL+LV E L EENYVSWSR MI  L IKNK+   D +L RP 
Sbjct: 35  DPNQGYFNPFCIHHNDNSSLILVTEPLTEENYVSWSRGMIIGLFIKNKLGFSDGSLSRPN 94

Query: 105 SDMLLAWIRN 115
            D L +WIRN
Sbjct: 95  DDSLPSWIRN 104

[Close]

BLAST of MELO3C004924.2 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 48  ETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDM 107
           E Y NPYFLHH+DNTSLVLV++ L  ENY SWSR+M+  L++KNK+  +D ++ RP  D+
Sbjct: 22  EQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGDL 81

Query: 108 LLAWI 113
           L +WI
Sbjct: 82  LHSWI 86

[Close]

BLAST of MELO3C004924.2 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 51  LNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLA 110
           LNPY+LHH DNT LVLV + L EENY SWSR+M+  LSIKNK+  +D ++ RP  ++L A
Sbjct: 39  LNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPA 98

Query: 111 WIRN 115
           WI N
Sbjct: 99  WIHN 102

[Close]

BLAST of MELO3C004924.2 vs. TrEMBL
Match: tr|A0A1S3C5T4|A0A1S3C5T4_CUCME (uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 17  SSHNPEVLPTSTMNS-PNTL--THALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIE 76
           S+ +P + P+S+ N+ PNT   TH     S N      +PY L+H+D ++L+LV EL+ +
Sbjct: 19  STVSPTIPPSSSANNLPNTSCNTHQEQYASSN------SPYILNHSDTSNLILVTELVTD 78

Query: 77  ENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLAWIRN 115
            NYV WSR+M+  +SI+NK+  +DV + +P  ++L  WI N
Sbjct: 79  NNYVIWSRSMVLAVSIQNKLGFIDVLITKPAGELLPLWIWN 113

[Close]

BLAST of MELO3C004924.2 vs. TrEMBL
Match: tr|A0A151S1Q4|A0A151S1Q4_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_029659 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 39  LSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDV 98
           +++   +PS    NP FLHH+D   LVL ++ L  +NY +WSRAM+  LS+KNKI  +D 
Sbjct: 1   MAKTPKDPSSDPTNPLFLHHSDGPGLVLTSQPLDNKNYTTWSRAMLVALSVKNKIPFVDG 60

Query: 99  TLPRPPSD--MLLAWIR 114
           +LPRP +D     AWIR
Sbjct: 61  SLPRPAADDPTYAAWIR 77

[Close]

BLAST of MELO3C004924.2 vs. TrEMBL
Match: tr|A0A2K3NHW2|A0A2K3NHW2_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g025923 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 52  NPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSD--MLL 111
           NP+F+HH+D+  LVLV+ LL EENY+SW RAM   L  KNK   +D ++P+PP+D     
Sbjct: 7   NPFFIHHSDHPGLVLVSHLLTEENYLSWRRAMTIALRAKNKFGFVDGSIPQPPNDDPQYQ 66

Query: 112 AWIRN 115
            W RN
Sbjct: 67  IWRRN 71

[Close]

BLAST of MELO3C004924.2 vs. TrEMBL
Match: tr|A0A2K3KX41|A0A2K3KX41_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g057802 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-10
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 52  NPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSD--MLL 111
           NP+F+HH+D+  LVLV+ LL EENY+SW RAM   L  KNK   +D ++P+PP+D     
Sbjct: 7   NPFFIHHSDHPGLVLVSHLLTEENYLSWRRAMTIALRAKNKFGFVDGSIPQPPNDDPQYQ 66

Query: 112 AWIRN 115
            W RN
Sbjct: 67  IWRRN 71

[Close]

BLAST of MELO3C004924.2 vs. TrEMBL
Match: tr|A0A2H3X1A7|A0A2H3X1A7_PHODC (uncharacterized protein LOC103696866 OS=Phoenix dactylifera OX=42345 GN=LOC103696866 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 47  SETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPP 105
           +E  ++PYFLHH DNT L LV+ +L E+NY +WSR+M+  LS+KNK   +D ++P+PP
Sbjct: 20  AEDPMSPYFLHHGDNTGLQLVSLILNEDNYSTWSRSMVMALSVKNKEGFIDGSIPQPP 77

The following BLAST results are available for this feature:

BLAST of MELO3C004924.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649121.1	3.0e-18	55.56	PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus]	[more]
XP_022156861.1	4.0e-15	50.00	uncharacterized protein LOC111023702 [Momordica charantia]	[more]
XP_011650144.1	1.5e-14	58.57	PREDICTED: uncharacterized protein LOC105434731 [Cucumis sativus]	[more]
XP_022152756.1	1.3e-13	56.92	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_022154608.1	2.9e-13	59.38	uncharacterized protein LOC111021831 [Momordica charantia]	[more]

BLAST of MELO3C004924.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004924.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004924.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5T4\|A0A1S3C5T4_CUCME	5.8e-10	39.60	uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=...	[more]
tr\|A0A151S1Q4\|A0A151S1Q4_CAJCA	7.5e-10	46.75	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_029659 PE=4 SV=1	[more]
tr\|A0A2K3NHW2\|A0A2K3NHW2_TRIPR	9.8e-10	50.77	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g02592...	[more]
tr\|A0A2K3KX41\|A0A2K3KX41_TRIPR	9.8e-10	50.77	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g05780...	[more]
tr\|A0A2H3X1A7\|A0A2H3X1A7_PHODC	4.9e-09	51.72	uncharacterized protein LOC103696866 OS=Phoenix dactylifera OX=42345 GN=LOC10369...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029472	UBN2_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004924.2.1	MELO3C004924.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Gag-polypeptide of LTR copia-type	PFAM	PF14244	Retrotran_gag_3	coord: 57..104 e-value: 1.4E-14 score: 53.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..31
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 44..105
None	No IPR available	PANTHER	PTHR37610:SF2	SUBFAMILY NOT NAMED	coord: 44..105

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004924.2	Silver-seed gourd	carmedB0452
MELO3C004924.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004924.2	Watermelon (97103) v2	medwmbB142
MELO3C004924.2	Wax gourd	medwgoB176
MELO3C004924.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004924.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004924.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C004924.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004924.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C004924.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004924.2	Cucurbita pepo (Zucchini)	cpemedB583
MELO3C004924.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004924.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004924.2	Cucumber (Chinese Long) v2	cumedB173
MELO3C004924.2	Melon (DHL92) v3.6.1	medmedB072
MELO3C004924.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004924.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C004924.2	Watermelon (97103) v1	medwmB143