MELO3C004910.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004910.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	KNR4/SMI1 homolog 2-like
Location	chr12 : 7132978 .. 7133700 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGGTTCGGGAAGTAAGCGAGATAGTCCAATAACTTCAAAAAAGAAGGGGAGGAATGAATCTCCAAAAGAAGATGCCACCGTATGGAAGAAACAAAGGATAAAAAGCTTGGTAAACTACAGATTTATTTTCTAATGAGGTATGGTCTGTGTTAGTTTCAAAAAGTACCTTATTGATGTTGTGGTCTGTGTAGGTTTCAAAATGTTCAATTTACAGAAGGAAATGTGAAGAAAAGAAAGAAGAAGAGATTGAAAAAAAGGTATGTGTTTTACCATTTGTTGTACTTCAATTCTGTATTATATAAATTGATAATATAACGTTGAAAAACAGAAAAATACTGAAAGCGAAGAAGTGGAACAAGGAGAAGAAGAAGTTAAACAAGGAGAAGAAGATAACGATGGAAAAAGGGAAGGGGAGATAGTGGTAGATGAAGATTTCAGTTCATGGACGAGTGAACAAGATGAAAGACTAAGAGATAATAAAAAGAGAAAAAAGATTACGAAAAAGGGAAAGAAGGTAAGTATATAGTTCATTTGATAAAGTGTTGATTATTTTTTGTATTTCGCTATAAATTTTCTTTTTATAACATAGGTGAAGGCTGTTAAAAAGGAACAAAAGGCAAAAGAATATCAAAGAAGGAAGGGCAAAGCACTGATGAAACAAGAAAAGTCTGAGGTATGTGTTATATGGTACTACCGTCTATGTGAAGTATGGTAA

mRNA sequence

ATGGTGGAGGGTTCGGGAAGTAAGCGAGATAGTCCAATAACTTCAAAAAAGAAGGGGAGGAATGAATCTCCAAAAGAAGATGCCACCGTATGGAAGAAACAAAGGATAAAAAGCTTGGTTTCAAAATGTTCAATTTACAGAAGGAAATGTGAAGAAAAGAAAGAAGAAGAGATTGAAAAAAAGAAAAATACTGAAAGCGAAGAAGTGGAACAAGGAGAAGAAGAAGTTAAACAAGGAGAAGAAGATAACGATGGAAAAAGGGAAGGGGAGATAGTGGTAGATGAAGATTTCAGTTCATGGACGAGTGAACAAGATGAAAGACTAAGAGATAATAAAAAGAGAAAAAAGATTACGAAAAAGGGAAAGAAGGTGAAGGCTGTTAAAAAGGAACAAAAGGCAAAAGAATATCAAAGAAGGAAGGGCAAAGCACTGATGAAACAAGAAAAGTCTGAGGTATGTGTTATATGGTACTACCGTCTATGTGAAGTATGGTAA

Coding sequence (CDS)

ATGGTGGAGGGTTCGGGAAGTAAGCGAGATAGTCCAATAACTTCAAAAAAGAAGGGGAGGAATGAATCTCCAAAAGAAGATGCCACCGTATGGAAGAAACAAAGGATAAAAAGCTTGGTTTCAAAATGTTCAATTTACAGAAGGAAATGTGAAGAAAAGAAAGAAGAAGAGATTGAAAAAAAGAAAAATACTGAAAGCGAAGAAGTGGAACAAGGAGAAGAAGAAGTTAAACAAGGAGAAGAAGATAACGATGGAAAAAGGGAAGGGGAGATAGTGGTAGATGAAGATTTCAGTTCATGGACGAGTGAACAAGATGAAAGACTAAGAGATAATAAAAAGAGAAAAAAGATTACGAAAAAGGGAAAGAAGGTGAAGGCTGTTAAAAAGGAACAAAAGGCAAAAGAATATCAAAGAAGGAAGGGCAAAGCACTGATGAAACAAGAAAAGTCTGAGGTATGTGTTATATGGTACTACCGTCTATGTGAAGTATGGTAA

Protein sequence

MVEGSGSKRDSPITSKKKGRNESPKEDATVWKKQRIKSLVSKCSIYRRKCEEKKEEEIEKKKNTESEEVEQGEEEVKQGEEDNDGKREGEIVVDEDFSSWTSEQDERLRDNKKRKKITKKGKKVKAVKKEQKAKEYQRRKGKALMKQEKSEVCVIWYYRLCEVW

Homology

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BLAST of MELO3C004910.2 vs. NCBI nr
Match: XP_008450225.1 (PREDICTED: protein Ycf2-like [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MVEGSGSKRDSPITSKKKGRNESPKEDATVWKKQRIKSLVSKCSIYR 48
          M EGS  KR+SP TSKK+ R E  KE+ATV KKQRIKSLVS+  +YR
Sbjct: 47 MAEGSRGKRESPETSKKRVRTEMKKEEATVQKKQRIKSLVSRRRVYR 93

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BLAST of MELO3C004910.2 vs. TrEMBL
Match: tr|A0A1S3BNT0|A0A1S3BNT0_CUCME (protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-05
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MVEGSGSKRDSPITSKKKGRNESPKEDATVWKKQRIKSLVSKCSIYR 48
          M EGS  KR+SP TSKK+ R E  KE+ATV KKQRIKSLVS+  +YR
Sbjct: 47 MAEGSRGKRESPETSKKRVRTEMKKEEATVQKKQRIKSLVSRRRVYR 93

The following BLAST results are available for this feature:

BLAST of MELO3C004910.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450225.1	1.2e-04	65.96	PREDICTED: protein Ycf2-like [Cucumis melo]	[more]

BLAST of MELO3C004910.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004910.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004910.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNT0\|A0A1S3BNT0_CUCME	7.9e-05	65.96	protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004910.2.1	MELO3C004910.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..112

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004910.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004910.2	Cucumber (Gy14) v1	cgymedB370
MELO3C004910.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004910.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C004910.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004910.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C004910.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004910.2	Cucurbita pepo (Zucchini)	cpemedB583
MELO3C004910.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004910.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004910.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004910.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C004910.2	Watermelon (97103) v1	medwmB143
MELO3C004910.2	Silver-seed gourd	carmedB0174
MELO3C004910.2	Silver-seed gourd	carmedB0452
MELO3C004910.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004910.2	Watermelon (97103) v2	medwmbB142
MELO3C004910.2	Wax gourd	medwgoB176