MELO3C004883.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004883.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionIntegrase
Locationchr12 : 7981223 .. 7981429 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

mRNA sequence

ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

Coding sequence (CDS)

ATGGCTACAGAGATTTTAGGGAGCTTGTTAGCTCAGCTTCAGGTTAGGTCTTCTCTGATAGCTGAGATTGTTAGAAAGCAGTTAGAAGACAGTCAACTTCAGAAAAGGCTTGAAAAGACCAAGCAAAGCCAAGAAACTGAATTTGAGTTGAGGTCAGATGAAGCCATAGGTAAGGTAGACTATGTGTTCCAAGTGTTAGAGAATTGA

Protein sequence

MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGKVDYVFQVLEN
Homology
[Close]
BLAST of MELO3C004883.2 vs. NCBI nr
Match: XP_016900410.1 (PREDICTED: uncharacterized protein LOC107990891 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-06
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1   MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 59
           +  E  GSLLAQ QVRS L+AEIVR+  EDS LQK+LEK+K+  E E ELR+D AI K
Sbjct: 53  VTVEESGSLLAQFQVRSCLVAEIVRRSSEDSNLQKKLEKSKERLEVECELRADGAIVK 110

[Close]
BLAST of MELO3C004883.2 vs. TrEMBL
Match: tr|A0A1S4DXG7|A0A1S4DXG7_CUCME (uncharacterized protein LOC107990891 OS=Cucumis melo OX=3656 GN=LOC107990891 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1   MATEILGSLLAQLQVRSSLIAEIVRKQLEDSQLQKRLEKTKQSQETEFELRSDEAIGK 59
           +  E  GSLLAQ QVRS L+AEIVR+  EDS LQK+LEK+K+  E E ELR+D AI K
Sbjct: 53  VTVEESGSLLAQFQVRSCLVAEIVRRSSEDSNLQKKLEKSKERLEVECELRADGAIVK 110

The following BLAST results are available for this feature:
BLAST of MELO3C004883.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900410.17.6e-0662.07PREDICTED: uncharacterized protein LOC107990891 [Cucumis melo][more]
BLAST of MELO3C004883.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C004883.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C004883.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DXG7|A0A1S4DXG7_CUCME5.0e-0662.07uncharacterized protein LOC107990891 OS=Cucumis melo OX=3656 GN=LOC107990891 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004883.2.1MELO3C004883.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004883.2Wax gourdmedwgoB176
MELO3C004883.2Cucumber (Gy14) v2cgybmedB009
MELO3C004883.2Cucumber (Gy14) v1cgymedB361
MELO3C004883.2Cucurbita maxima (Rimu)cmamedB161
MELO3C004883.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004883.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004883.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C004883.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C004883.2Wild cucumber (PI 183967)cpimedB011
MELO3C004883.2Cucumber (Chinese Long) v2cumedB010
MELO3C004883.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004883.2Watermelon (Charleston Gray)medwcgB127
MELO3C004883.2Watermelon (97103) v1medwmB165
MELO3C004883.2Silver-seed gourdcarmedB0174
MELO3C004883.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004883.2Watermelon (97103) v2medwmbB127