MELO3C004879.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004879.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 8026833 .. 8027135 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGAGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

mRNA sequence

ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGaGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

Coding sequence (CDS)

ATGGCCAAAGATAAGAGTGATGATCAATCTAGAAAGAAAGAAACACCAACTAAGGCCAGTCCATCCAAAATAGATATTGAAATTGTACATTCTAACGACCCTTTGTCGGAACAAGCACAGTTGGATTCCCCATCACACAGCGAAGCTCTACCCGATGCGAGAGAAGTCTTTGGAACAAAGGGATGGAATTCTTTCAGCTTCAAGGGCAAAGAGGTGCCCATGAATGATGAAAGCATAGGATTTATGATGAACTTACCTTATGAAAGAAAGCAACAGACGAGCAAAGGCAAAAGAAGAAGCTAA

Protein sequence

MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTKGWNSFSFKGKEVPMNDESIGFMMNLPYERKQQTSKGKRRS

Homology

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BLAST of MELO3C004879.2 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_3G298590 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          MA +K+ ++S K E           +E+V S+  +SEQAQ   PS  + LP + ++FG +
Sbjct: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60

Query: 61 GWNSFSFKGKEVPMNDESIGFMMNLPYERKQQTSK 96
          G+N F+F+G+E+ M  E++  M+ L  E  ++  K
Sbjct: 61 GFNPFNFQGREISMTAENLEIMLGLFLEENKRREK 81

[Close]

BLAST of MELO3C004879.2 vs. TrEMBL
Match: tr|A0A0A0LAT2|A0A0A0LAT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1  MAKDKSDDQSRKKETPTKASPSKIDIEIVHSNDPLSEQAQLDSPSHSEALPDAREVFGTK 60
          MA +K+ ++S K E           +E+V S+  +SEQAQ   PS  + LP + ++FG +
Sbjct: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60

Query: 61 GWNSFSFKGKEVPMNDESIGFMMNLPYERKQQTSK 96
          G+N F+F+G+E+ M  E++  M+ L  E  ++  K
Sbjct: 61 GFNPFNFQGREISMTAENLEIMLGLFLEENKRREK 81

The following BLAST results are available for this feature:

BLAST of MELO3C004879.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57782.1	3.6e-04	33.68	hypothetical protein Csa_3G298590 [Cucumis sativus]	[more]

BLAST of MELO3C004879.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004879.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004879.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAT2\|A0A0A0LAT2_CUCSA	2.4e-04	33.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004879.2.1	MELO3C004879.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004879.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004879.2	Watermelon (97103) v2	medwmbB127
MELO3C004879.2	Wax gourd	medwgoB176
MELO3C004879.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004879.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004879.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C004879.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004879.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004879.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004879.2	Cucurbita pepo (Zucchini)	cpemedB880
MELO3C004879.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004879.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004879.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004879.2	Watermelon (Charleston Gray)	medwcgB127
MELO3C004879.2	Watermelon (97103) v1	medwmB165
MELO3C004879.2	Silver-seed gourd	carmedB0174