MELO3C004877 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004877
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGeneral transcription factor 2-related zinc finger protein
Locationchr12 : 8247985 .. 8248161 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAAGGTATTGTGCAACGTCATTAGAGTCCATGGTGATGTTGCAATCATGAAGATGGGGAAGGAAGTCACACCATTGTCAGCTATAGTGGTGGATGGAATGAACTCAAAGTATTCAAAAGTTTCGACGGTGGTGGAGAAGTCAATGGTAAAAAACCTTCTTTGCCACTAG

mRNA sequence

ATGGGAAGAAAGGTATTGTGCAACGTCATTAGAGTCCATGGTGATGTTGCAATCATGAAGATGGGGAAGGAAGTCACACCATTGTCAGCTATAGTGGTGGATGGAATGAACTCAAAGTATTCAAAAGTTTCGACGGTGGTGGAGAAGTCAATGGTAAAAAACCTTCTTTGCCACTAG

Coding sequence (CDS)

ATGGGAAGAAAGGTATTGTGCAACGTCATTAGAGTCCATGGTGATGTTGCAATCATGAAGATGGGGAAGGAAGTCACACCATTGTCAGCTATAGTGGTGGATGGAATGAACTCAAAGTATTCAAAAGTTTCGACGGTGGTGGAGAAGTCAATGGTAAAAAACCTTCTTTGCCACTAG

Protein sequence

MGRKVLCNVIRVHGDVAIMKMGKEVTPLSAIVVDGMNSKYSKVSTVVEKSMVKNLLCH*
Homology
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BLAST of MELO3C004877 vs. NCBI nr
Match: gi|659069703|ref|XP_008451378.1| (PREDICTED: BURP domain-containing protein 5-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 15  DVAIMKMGKEVTPLSAIVVDGMNSKYSKVSTVVEKSMVKNLLCH 59
           DV IMKMGKEV  +SA V DGMN  YS+VSTVVEKS V NLLCH
Sbjct: 148 DVVIMKMGKEVKVMSATVEDGMNPTYSQVSTVVEKSKVNNLLCH 191

The following BLAST results are available for this feature:
BLAST of MELO3C004877 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069703|ref|XP_008451378.1|2.8e-0875.00PREDICTED: BURP domain-containing protein 5-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004877T1MELO3C004877T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004877Cucurbita moschata (Rifu)cmomeB138
MELO3C004877Cucurbita moschata (Rifu)cmomeB181
MELO3C004877Wild cucumber (PI 183967)cpimeB011
MELO3C004877Cucumber (Chinese Long) v2cumeB015
MELO3C004877Watermelon (Charleston Gray)mewcgB131
MELO3C004877Watermelon (97103) v1mewmB169
MELO3C004877Cucurbita pepo (Zucchini)cpemeB480
MELO3C004877Cucurbita pepo (Zucchini)cpemeB744
MELO3C004877Bottle gourd (USVL1VR-Ls)lsimeB244
MELO3C004877Cucumber (Gy14) v2cgybmeB010
MELO3C004877Silver-seed gourdcarmeB0171
MELO3C004877Cucumber (Chinese Long) v3cucmeB010
MELO3C004877Watermelon (97103) v2mewmbB134
MELO3C004877Wax gourdmewgoB174
MELO3C004877Cucumber (Gy14) v1cgymeB365
MELO3C004877Cucurbita maxima (Rimu)cmameB148
MELO3C004877Cucurbita maxima (Rimu)cmameB194