MELO3C004859.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004859.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAt3g49990
Locationchr12 : 8618651 .. 8619187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGTTGGTTGTTTTATTTTGTTCAGAATACAGACTATTTTTTGGCATTTGGGCTTTATTCATTATATGGATTGGATACATAAGTTAGCACATTCAGCATTATATTGTGGTTACCTATTTCTGAAAATAAGCAACAGTTTGGGAAGCTTTTGTATTGCTCTGGATATGTTTTTTTCCCTTTCATACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

mRNA sequence

ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

Coding sequence (CDS)

ATGCAATCTCGTGGGGAAGTTGGTGGAACGTCGTCACTGAAAAATGTAAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGTTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAAAAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGTGAATGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGATACATGTAATTATGGTGATAGCTAA

Protein sequence

MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVDTCNYGDS
Homology
[Close]
BLAST of MELO3C004859.2 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0 

Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNVVD
Sbjct: 150 PRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVD 191

[Close]
BLAST of MELO3C004859.2 vs. NCBI nr
Match: XP_004146107.1 (PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus] >XP_011650323.1 PREDICTED: protein LTV1 homolog isoform X1 [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_3G006680 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNVVD
Sbjct: 150 PRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVD 191

[Close]
BLAST of MELO3C004859.2 vs. NCBI nr
Match: XP_022134639.1 (protein LTV1 homolog [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 2   QSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 61
           +SRGE+GG + L +++RREILEL FPDDGYNYLL+LR I+NTG GS  YQNPKAKL+ +P
Sbjct: 94  RSRGEIGGPAPLPEDIRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAKLDQLP 153

Query: 62  LDEKAYDASRMIVSKVNFDANVN-VYEAASKIVGVRVQNVVD 102
            DEKAYDASR++VSK N D + N +Y+ ASK VGV+VQN VD
Sbjct: 154 RDEKAYDASRVLVSKGNNDGDENFIYKVASKTVGVKVQNAVD 195

[Close]
BLAST of MELO3C004859.2 vs. NCBI nr
Match: XP_022940362.1 (protein LTV1 homolog [Cucurbita moschata])

HSP 1 Score: 132.5 bits (332), Expect = 8.6e-28
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 2   QSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 61
           +SRGE+GG +SL +NVRREILEL FPDDGYNYLL+LR I+NTG GS  Y NPKAKLN +P
Sbjct: 91  RSRGELGGPASLPENVRREILELGFPDDGYNYLLHLRDIKNTGGGSAFYNNPKAKLNQLP 150

Query: 62  LDEKAYDASRMIVSKVNFDANVNV-YEAASKIVGVRVQNVVD 102
            DEKAYDAS +IVS+   DA+ N+ Y+ ASK VGV+VQN +D
Sbjct: 151 RDEKAYDASGVIVSQGTSDADENIMYKVASKTVGVKVQNAID 192

[Close]
BLAST of MELO3C004859.2 vs. NCBI nr
Match: XP_023525399.1 (protein LTV1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 2   QSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 61
           +SRGE+GG +SL +NVRREILEL FPDDGYNYLL+LR I+NTG GS  Y NPKAKLN +P
Sbjct: 91  RSRGELGGPASLPENVRREILELGFPDDGYNYLLHLRDIKNTGGGSAFYNNPKAKLNQLP 150

Query: 62  LDEKAYDASRMIVSKVNFDANVNV-YEAASKIVGVRVQNVVD 102
            DEKAYDAS ++VS+   DA+ N+ Y+ ASK VGV+VQN +D
Sbjct: 151 RDEKAYDASGVLVSQGTSDADENIMYKVASKTVGVKVQNAID 192

[Close]
BLAST of MELO3C004859.2 vs. TAIR10
Match: AT3G49990.1 (unknown protein)

HSP 1 Score: 93.6 bits (231), Expect = 8.1e-20
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 15  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS 74
           +VR+EILEL +PDDGYNYL +LR I+NTG GS  Y NPK ++  +P D KAYDASR+ +S
Sbjct: 88  HVRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVKAYDASRVKIS 147

Query: 75  -KVNFDANVN--VYEAASKIVGVRVQNVVD 102
             VN + N N  +Y  ASK V V+VQ  +D
Sbjct: 148 GMVNEEGNDNKLMYSVASKTVNVKVQKAID 177

[Close]
BLAST of MELO3C004859.2 vs. TrEMBL
Match: tr|A0A1S3BKZ8|A0A1S3BKZ8_CUCME (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-38
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0 

Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQSRGEVGGTSSL +NVRREILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRM+VSK+N DA+ NVY+ ASKIVG+RVQNVVD
Sbjct: 150 PRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVD 191

[Close]
BLAST of MELO3C004859.2 vs. TrEMBL
Match: tr|A0A0A0L517|A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MQSRGEVGGTSSL-KNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 60
           MQ  G+VGGTSSL +NVR++ILEL FPDDGYNYLL+LR I+NTG GST YQNPKAKLN V
Sbjct: 90  MQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQV 149

Query: 61  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 102
           P DEKAYDASRMIVSK+N DA+ N Y+ ASKIVGVRVQNVVD
Sbjct: 150 PRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVD 191

[Close]
BLAST of MELO3C004859.2 vs. TrEMBL
Match: tr|K4BVI2|K4BVI2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251881 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 15  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS 74
           NVR+EILEL FPDDGYNYL +LR I+NTG GS  Y+NPKAKL  +P D KAYDASR+ V+
Sbjct: 97  NVRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKLTELPRDVKAYDASRVAVA 156

Query: 75  KVNFDANVN-VYEAASKIVGVRVQNVVD 102
           KV+ D+N   VY  A+K VGVRVQ  VD
Sbjct: 157 KVDDDSNEKYVYNVAAKTVGVRVQKAVD 184

[Close]
BLAST of MELO3C004859.2 vs. TrEMBL
Match: tr|M0ZWE7|M0ZWE7_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583152 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-22
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 15  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS 74
           +VR+EILEL FPDDGYNYL +LR I+NTG GS  Y+NPKAK N +P D KAYDASR+ V+
Sbjct: 97  DVRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKFNELPRDVKAYDASRVAVA 156

Query: 75  KVNFDANVN-VYEAASKIVGVRVQNVVD 102
           KV+ D+N   VY  A+K VGVRVQ  VD
Sbjct: 157 KVDDDSNEKYVYNVAAKTVGVRVQKAVD 184

[Close]
BLAST of MELO3C004859.2 vs. TrEMBL
Match: tr|A0A0V0IJ83|A0A0V0IJ83_SOLCH (Uncharacterized protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-22
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 15  NVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVPLDEKAYDASRMIVS 74
           +VR+EILEL FPDDGYNYL +LR I+NTG GS  Y+NPKAK N +P D KAYDASR+ V+
Sbjct: 97  DVRKEILELGFPDDGYNYLHHLREIKNTGGGSAYYENPKAKFNELPRDVKAYDASRVAVA 156

Query: 75  KVNFDANVN-VYEAASKIVGVRVQNVVD 102
           KV+ D+N   VY  A+K VGVRVQ  VD
Sbjct: 157 KVDDDSNEKYVYNVAAKTVGVRVQKAVD 184

The following BLAST results are available for this feature:
BLAST of MELO3C004859.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008448616.11.2e-3782.35PREDICTED: protein LTV1 homolog [Cucumis melo][more]
XP_004146107.15.6e-3578.43PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus] >XP_011650323.1 PRE... [more]
XP_022134639.13.9e-2866.67protein LTV1 homolog [Momordica charantia][more]
XP_022940362.18.6e-2867.65protein LTV1 homolog [Cucurbita moschata][more]
XP_023525399.11.5e-2766.67protein LTV1 homolog [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C004859.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49990.18.1e-2055.56unknown protein[more]
BLAST of MELO3C004859.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C004859.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BKZ8|A0A1S3BKZ8_CUCME7.9e-3882.35protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=4 SV=1[more]
tr|A0A0A0L517|A0A0A0L517_CUCSA3.7e-3578.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=4 SV=1[more]
tr|K4BVI2|K4BVI2_SOLLC3.6e-2265.91Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251881 PE=4 SV=1[more]
tr|M0ZWE7|M0ZWE7_SOLTU8.0e-2264.77Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583152 PE=4 SV=1[more]
tr|A0A0V0IJ83|A0A0V0IJ83_SOLCH8.0e-2264.77Uncharacterized protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042274 ribosomal small subunit biogenesis
biological_process GO:0000056 ribosomal small subunit export from nucleus
cellular_component GO:0034448 EGO complex
cellular_component GO:0031902 late endosome membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0030688 preribosome, small subunit precursor
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004859.2.1MELO3C004859.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004859.2Cucumber (Chinese Long) v2cumedB010
MELO3C004859.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004859.2Watermelon (Charleston Gray)medwcgB127
MELO3C004859.2Watermelon (97103) v1medwmB158
MELO3C004859.2Watermelon (97103) v1medwmB165
MELO3C004859.2Silver-seed gourdcarmedB0174
MELO3C004859.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004859.2Watermelon (97103) v2medwmbB127
MELO3C004859.2Wax gourdmedwgoB176
MELO3C004859.2Cucumber (Gy14) v2cgybmedB009
MELO3C004859.2Cucumber (Gy14) v1cgymedB361
MELO3C004859.2Cucurbita maxima (Rimu)cmamedB161
MELO3C004859.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004859.2Cucurbita moschata (Rifu)cmomedB151
MELO3C004859.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004859.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C004859.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C004859.2Wild cucumber (PI 183967)cpimedB011