MELO3C004857.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C004857.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr12 : 8651148 .. 8651726 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCAAACCCTAATATCCAGATCCCTAAAGATCCTCCCCAACCTCCGGTAGTCTTTCCGATGATACCTCCTTCTTCTTCCACAAATAACCCACCAAATACCTCTTGTAATACTCAACATGAACAATACGCCTTGTCCAATAAACCATACACCCTTCACCACAGTGATACATCCAACCTTGTTCTTGTCACTGAACCCCTTACAGATGATAACTATGTCACGTGGAGCTATTCAATAGTTCTTGCTTTATCAATTCAGAAGAAGCTCAAATTCATAGATGGATCGACTACTAAACTTGTCGGTGAGTTACTCCCTCTATGGATTACAAACAATAATGTAGTGATTGTTTTGATTCTAAACACTATTTCCAAGGGAATTTCATCAAGCATTTTGTTTACTGAATCCGCTCGGGCTATATGGATTAATCTTCAAGATTGTTTTCAAAAGAGAAATGGTCCACAGATTTTCAAGTTGAAACTTGACCTATTGACTCACATGCAAGATCAAGAATTTATGAGGCCCAGATTCAAGAAAGGAAATCCTGTTGAAGAAGAAAGGTGTCAAGAAGTAGAGTGA

mRNA sequence

ATGTCTTCAAACCCTAATATCCAGATCCCTAAAGATCCTCCCCAACCTCCGGTAGTCTTTCCGATGATACCTCCTTCTTCTTCCACAAATAACCCACCAAATACCTCTTGTAATACTCAACATGAACAATACGCCTTGTCCAATAAACCATACACCCTTCACCACAGTGATACATCCAACCTTGTTCTTGTCACTGAACCCCTTACAGATGATAACTATGTCACGTGGAGCTATTCAATAGTTCTTGCTTTATCAATTCAGAAGAAGCTCAAATTCATAGATGGATCGACTACTAAACTTGTCGGTGAGTTACTCCCTCTATGGATTACAAACAATAATGTAGTGATTGTTTTGATTCTAAACACTATTTCCAAGGGAATTTCATCAAGCATTTTGTTTACTGAATCCGCTCGGGCTATATGGATTAATCTTCAAGATTGTTTTCAAAAGAGAAATGGTCCACAGATTTTCAAGTTGAAACTTGACCTATTGACTCACATGCAAGATCAAGAATTTATGAGGCCCAGATTCAAGAAAGGAAATCCTGTTGAAGAAGAAAGGTGTCAAGAAGTAGAGTGA

Coding sequence (CDS)

ATGTCTTCAAACCCTAATATCCAGATCCCTAAAGATCCTCCCCAACCTCCGGTAGTCTTTCCGATGATACCTCCTTCTTCTTCCACAAATAACCCACCAAATACCTCTTGTAATACTCAACATGAACAATACGCCTTGTCCAATAAACCATACACCCTTCACCACAGTGATACATCCAACCTTGTTCTTGTCACTGAACCCCTTACAGATGATAACTATGTCACGTGGAGCTATTCAATAGTTCTTGCTTTATCAATTCAGAAGAAGCTCAAATTCATAGATGGATCGACTACTAAACTTGTCGGTGAGTTACTCCCTCTATGGATTACAAACAATAATGTAGTGATTGTTTTGATTCTAAACACTATTTCCAAGGGAATTTCATCAAGCATTTTGTTTACTGAATCCGCTCGGGCTATATGGATTAATCTTCAAGATTGTTTTCAAAAGAGAAATGGTCCACAGATTTTCAAGTTGAAACTTGACCTATTGACTCACATGCAAGATCAAGAATTTATGAGGCCCAGATTCAAGAAAGGAAATCCTGTTGAAGAAGAAAGGTGTCAAGAAGTAGAGTGA

Protein sequence

MSSNPNIQIPKDPPQPPVVFPMIPPSSSTNNPPNTSCNTQHEQYALSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHMQDQEFMRPRFKKGNPVEEERCQEVE
BLAST of MELO3C004857.2 vs. NCBI nr
Match: XP_008457013.1 (PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 2.6e-51
Identity = 114/173 (65.90%), Postives = 128/173 (73.99%), Query Frame = 0

Query: 1   MSSNPNIQIPKDPPQP--PVVFPMXXXXXXXXXXXNTSCNTQHEQYALSNKPYTLHHSDT 60
           M+SNPN+ IP+DPP P    V P            NTSCNT  EQYA SN PY L+HSDT
Sbjct: 1   MTSNPNLLIPEDPPLPQHSTVSPTIPPSSSANNLPNTSCNTHQEQYASSNSPYILNHSDT 60

Query: 61  SNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGELLPLWITNNNVVIVL 120
           SNL+LVTE +TD+NYV WS S+VLA+SIQ KL FID   TK  GELLPLWI NNNVVI  
Sbjct: 61  SNLILVTELVTDNNYVIWSRSMVLAVSIQNKLGFIDVLITKPAGELLPLWIWNNNVVIAW 120

Query: 121 ILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHMQDQE 172
           ILN+ SKGI SSILFT+SARA WI+LQDCFQKRNGP+IF+LK  L T  QDQE
Sbjct: 121 ILNSTSKGILSSILFTQSARATWIDLQDCFQKRNGPRIFQLKCGLSTLKQDQE 173

BLAST of MELO3C004857.2 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 4.9e-34
Identity = 80/140 (57.14%), Postives = 107/140 (76.43%), Query Frame = 0

Query: 50  PYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGELLPLWI 109
           PY LHH+D + LVLVT+PLT++NY +WS S+++ALSI+ KL FIDGS ++ +GELLP WI
Sbjct: 41  PYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPAWI 100

Query: 110 TNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHMQD 169
            NN+VVI  ILN++SK ISSSILF+ESAR IWI+L++ F+K NGP+IF+LK DL    Q+
Sbjct: 101 HNNHVVIAWILNSVSKEISSSILFSESARDIWIDLKERFEKSNGPRIFQLKRDLAQLWQN 160

Query: 170 QEFMRPRFKKGNPVEEERCQ 190
           Q+ +   F K   V +E  Q
Sbjct: 161 QQSVSLYFTKLKAVWDELIQ 180

BLAST of MELO3C004857.2 vs. NCBI nr
Match: XP_011649121.1 (PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 0

Query: 34  NTSCNTQHEQYALSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFI 93
           +TS  T  +Q      PY LHH+D +NLVLVTE LT++NYV+WS ++ + LS++ K+ F+
Sbjct: 25  DTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMTIGLSVKNKIGFV 84

Query: 94  DGSTTKLVGELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNG 153
           DG+  +  G+LLP+WI NNN+VI  ILN++SK IS++ILF++ AR IW+ L++ FQK+N 
Sbjct: 85  DGTIARPTGDLLPVWIRNNNIVISWILNSVSKPISANILFSDLARTIWVELKERFQKKNA 144

Query: 154 PQIFKLKLDLLTHMQDQE 172
           P+IF+LK  L T  Q+Q+
Sbjct: 145 PRIFQLKRSLATLSQNQD 162

BLAST of MELO3C004857.2 vs. NCBI nr
Match: XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 69/118 (58.47%), Postives = 93/118 (78.81%), Query Frame = 0

Query: 53  LHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGELLPLWITNN 112
           +HH+DTSNLVLV++PLT+ NYV+WS S+ +ALSI+ KL FI+GS  K  G+LLP+WI N 
Sbjct: 1   MHHNDTSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKPAGDLLPVWIRNK 60

Query: 113 NVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHMQDQ 171
           +VVI   LN++SK IS+S++FT S   IW++L+D FQ +NGPQIF+L+ DL T  QDQ
Sbjct: 61  HVVIAWFLNSVSKPISASLIFTNSTHEIWLDLKDRFQLQNGPQIFQLRRDLATLTQDQ 118

BLAST of MELO3C004857.2 vs. NCBI nr
Match: XP_022891830.1 (uncharacterized protein LOC111406673 [Olea europaea var. sylvestris])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 72/155 (46.45%), Postives = 106/155 (68.39%), Query Frame = 0

Query: 34  NTSCNTQHEQYALSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFI 93
           N+S +  H      + PY LHHSD+  L+LV++PLT +NY +WS ++++ALS++ KL FI
Sbjct: 57  NSSSSVSHSAIDDGSSPYYLHHSDSPGLILVSQPLTGENYTSWSRAMIIALSVKNKLGFI 116

Query: 94  DGSTTKLVG--ELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKR 153
           DGS ++     +LL  WI NNN+VI  ILN++SK I++SI+++ESA  IW +L++ FQ+R
Sbjct: 117 DGSISRPESNVDLLNSWIRNNNIVISWILNSVSKDITASIIYSESAHEIWTDLKERFQQR 176

Query: 154 NGPQIFKLKLDLLTHMQDQEFMRPRFKKGNPVEEE 187
           NGP+IF+LK +L+ H Q Q      F K   V EE
Sbjct: 177 NGPRIFQLKRELMNHTQGQMSASVYFTKLKAVWEE 211

BLAST of MELO3C004857.2 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 34/132 (25.76%), Postives = 64/132 (48.48%), Query Frame = 0

Query: 50  PYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTK--LVGELLPL 109
           P  +HH    ++  +++   +DNYV W       L + KK  FIDG+  K      L   
Sbjct: 21  PPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQP 80

Query: 110 WITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHM 169
           W   N +V+  ++N+++  +  S+++ E+A  +W +L+  F      +I++L+  L T  
Sbjct: 81  WEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLR 140

Query: 170 QDQEFMRPRFKK 180
           Q  + +   F K
Sbjct: 141 QGGDSVEEYFGK 150

BLAST of MELO3C004857.2 vs. TrEMBL
Match: tr|A0A1S3C5T4|A0A1S3C5T4_CUCME (uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 114/173 (65.90%), Postives = 128/173 (73.99%), Query Frame = 0

Query: 1   MSSNPNIQIPKDPPQP--PVVFPMXXXXXXXXXXXNTSCNTQHEQYALSNKPYTLHHSDT 60
           M+SNPN+ IP+DPP P    V P            NTSCNT  EQYA SN PY L+HSDT
Sbjct: 1   MTSNPNLLIPEDPPLPQHSTVSPTIPPSSSANNLPNTSCNTHQEQYASSNSPYILNHSDT 60

Query: 61  SNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGELLPLWITNNNVVIVL 120
           SNL+LVTE +TD+NYV WS S+VLA+SIQ KL FID   TK  GELLPLWI NNNVVI  
Sbjct: 61  SNLILVTELVTDNNYVIWSRSMVLAVSIQNKLGFIDVLITKPAGELLPLWIWNNNVVIAW 120

Query: 121 ILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHMQDQE 172
           ILN+ SKGI SSILFT+SARA WI+LQDCFQKRNGP+IF+LK  L T  QDQE
Sbjct: 121 ILNSTSKGILSSILFTQSARATWIDLQDCFQKRNGPRIFQLKCGLSTLKQDQE 173

BLAST of MELO3C004857.2 vs. TrEMBL
Match: tr|A0A151RRY1|A0A151RRY1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033170 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 56/139 (40.29%), Postives = 88/139 (63.31%), Query Frame = 0

Query: 50  PYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTKLVGE--LLPL 109
           P  LHHSD   LVL ++PL + NY TWS+++++A S++ K+ F+DGS  KL       P 
Sbjct: 15  PLFLHHSDGPGLVLTSQPLDNKNYTTWSHAMLVAFSVKNKIPFVDGSLPKLAANHPTYPA 74

Query: 110 WITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKLDLLTHM 169
           WI  NN+VI  + N++SK I +SILF  +A+ IW +L+  F ++NGP IF+L+  L++  
Sbjct: 75  WIRGNNLVISWLYNSVSKDIITSILFANTAKEIWDDLKTKFSRKNGPHIFQLRRQLMSLQ 134

Query: 170 QDQEFMRPRFKKGNPVEEE 187
           Q  +++   + K   + EE
Sbjct: 135 QGIDYVSTYYTKLKSIWEE 153

BLAST of MELO3C004857.2 vs. TrEMBL
Match: tr|A0A2N9G1L6|A0A2N9G1L6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21132 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.0e-20
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 46  LSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTK----LV 105
           L + PY LH SD S+L+LVTEPLT DN+ +W  S+ +AL+I+ KL F+DGS  +      
Sbjct: 24  LPSSPYYLHASDNSSLILVTEPLTGDNFHSWFRSMNMALTIKNKLGFVDGSIREPEDGFR 83

Query: 106 GELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKL 165
             L   W   N VVI  ILN +SK I +S+L+  +A  IW  LQD F + NGPQIF+L+ 
Sbjct: 84  SPLYAHWTRCNTVVITWILNCVSKKIHASVLYKPTAYVIWKELQDKFSQSNGPQIFQLEK 143

Query: 166 DLLTHMQDQ 171
           D+ +  Q+Q
Sbjct: 144 DIGSLTQNQ 152

BLAST of MELO3C004857.2 vs. TrEMBL
Match: tr|A0A2N9GYQ8|A0A2N9GYQ8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32764 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 46  LSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTK----LV 105
           L + PY LH SD S+L+LVTEPLT DN+ +W  S+ +AL+I+ KL F+DGS  +      
Sbjct: 24  LPSSPYYLHASDNSSLILVTEPLTGDNFHSWFRSMNMALTIKNKLGFVDGSIREPEDGFR 83

Query: 106 GELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKL 165
             L   W   N VVI  ILN +SK I +S+L+  +A  IW  LQD F + NGPQIF+L+ 
Sbjct: 84  SPLYAHWTRCNTVVITWILNCVSKKIHASVLYKPTAYVIWKELQDKFSQSNGPQIFQLEK 143

Query: 166 DLLTHMQDQ 171
           ++ +  Q+Q
Sbjct: 144 EIGSLTQNQ 152

BLAST of MELO3C004857.2 vs. TrEMBL
Match: tr|A0A2N9GQ92|A0A2N9GQ92_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29286 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 46  LSNKPYTLHHSDTSNLVLVTEPLTDDNYVTWSYSIVLALSIQKKLKFIDGSTTK----LV 105
           L + PY LH SD S+L+LVTEPLT DN+ +W  S+ +AL+I+ KL F+DGS  +      
Sbjct: 24  LPSSPYYLHASDNSSLILVTEPLTGDNFHSWFRSMNMALTIKNKLGFVDGSIREPEDGFR 83

Query: 106 GELLPLWITNNNVVIVLILNTISKGISSSILFTESARAIWINLQDCFQKRNGPQIFKLKL 165
             L   W   N VVI  ILN +SK I +S+L+  +A  IW  LQD F + NGPQIF+L+ 
Sbjct: 84  SPLYAHWTRCNTVVITWILNCVSKKIHASVLYKPTAYVIWKELQDKFSQSNGPQIFQLEK 143

Query: 166 DLLTHMQDQ 171
           ++ +  Q+Q
Sbjct: 144 EIGSLTQNQ 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008457013.12.6e-5165.90PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo][more]
XP_022154608.14.9e-3457.14uncharacterized protein LOC111021831 [Momordica charantia][more]
XP_011649121.11.7e-3150.00PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus][more]
XP_022154973.11.5e-3058.47uncharacterized protein LOC111022117 [Momordica charantia][more]
XP_022891830.11.3e-2946.45uncharacterized protein LOC111406673 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
AT1G21280.16.9e-0625.76Retrotransposon gag protein (InterPro:IPR005162)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3C5T4|A0A1S3C5T4_CUCME1.7e-5165.90uncharacterized protein LOC103496792 OS=Cucumis melo OX=3656 GN=LOC103496792 PE=... [more]
tr|A0A151RRY1|A0A151RRY1_CAJCA1.9e-2140.29Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033170 PE=4 SV=1[more]
tr|A0A2N9G1L6|A0A2N9G1L6_FAGSY6.0e-2046.51Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21132 PE=4 SV=1[more]
tr|A0A2N9GYQ8|A0A2N9GYQ8_FAGSY1.7e-1945.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32764 PE=4 SV=1[more]
tr|A0A2N9GQ92|A0A2N9GQ92_FAGSY1.7e-1945.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29286 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029472UBN2_3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004857.2.1MELO3C004857.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Gag-polypeptide of LTR copia-typePFAMPF14244Retrotran_gag_3coord: 54..99
e-value: 4.3E-16
score: 58.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR37610:SF2SUBFAMILY NOT NAMEDcoord: 45..177
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 45..177

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None