MELO3C004856.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C004856.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein NDR1
Locationchr12 : 8662302 .. 8662820 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

mRNA sequence

ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

Coding sequence (CDS)

ATGAGAAGCACTACTGCTACTACTACACATGGGATAACAAAACGCACAAGGCTCATTAGACTTGTAGGAAGAAGCTTGTTGGGAGTAATATTCCTTGTTGCTCTTGGAATGATCATATGTTGGCTTGTTGTCATCCCCAAAACCCCACGTCTCATTGTGGAAACTGGCAAAGTCGTAGTCCATAGTTCAACTATTAGTATGCTCAATGCCACCATAGCATTCACTGTCAAAAGCTACAACCCGAACAAAAGAGCCTCCATTCACATGGATTATATGAGGATGATAGTCGATAACATGGGCGTGAGGTTTTCCTCCGCCATCCCCTCCTTCACGCTCACGCCCAGAAACCAAACCGTCTTGTGGTCAGCCGTCCAAGTCAACTTTGAATACCCATTTGGGTACACGGAAGAGATAAATCCAGAACTACAATTCTCAGCTGAAGTCAGGTACACTCATTTAGAGATAATTTTAAAGTTAGACCCAAATTTTTGGACAAAATGGAATATGCTCAACTTTTAA

Protein sequence

MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPFGYTEEINPELQFSAEVRYTHLEIILKLDPNFWTKWNMLNF
BLAST of MELO3C004856.2 vs. NCBI nr
Match: XP_008462348.1 (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 4.4e-74
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV
Sbjct: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
           WSAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856.2 vs. NCBI nr
Match: XP_011654126.1 (PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70
Identity = 143/151 (94.70%), Postives = 147/151 (97.35%), Query Frame = 0

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEVR T
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVRVT 151

BLAST of MELO3C004856.2 vs. NCBI nr
Match: XP_011654134.1 (PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus] >KGN64866.1 hypothetical protein Csa_1G132760 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 0

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856.2 vs. NCBI nr
Match: XP_008462337.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 97/139 (69.78%), Postives = 114/139 (82.01%), Query Frame = 0

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GR LL VIFLV L M+ICWLVV PK PR +VETGKV+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKNPRFVVETGKVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
           AFTVK YNPNKRASIH+  MRMI+ +MG  FSSA+P F  TP NQTVL  AV VNF+YPF
Sbjct: 85  AFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMPMFMQTPGNQTVLSPAVDVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHREEINPELHFSAEISYS 163

BLAST of MELO3C004856.2 vs. NCBI nr
Match: XP_011648454.1 (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus] >KGN64867.1 hypothetical protein Csa_1G132770 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 0

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK PR+ VETG+V+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVL  AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHQEEINPELHFSAEISYS 163

BLAST of MELO3C004856.2 vs. TAIR10
Match: AT5G22870.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 14  KRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSST-ISMLNATI 73
           +R  LI  +   +L +IF+ A+G +I WL   PK  R  VE   V   + T  + ++AT 
Sbjct: 21  RRPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATF 80

Query: 74  AFTVKSYNPNKRASIHMDYMRMIV 97
            FT++S+NPN R S++   + + V
Sbjct: 81  QFTIQSHNPNHRISVYYSSVEIFV 104

BLAST of MELO3C004856.2 vs. TrEMBL
Match: tr|A0A1S3CGS4|A0A1S3CGS4_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.9e-74
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV
Sbjct: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
           WSAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856.2 vs. TrEMBL
Match: tr|A0A0A0LY09|A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.9e-70
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 0

Query: 1   MRSTTATTTHGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVV 60
           MRSTT TTTHGITKRTRLIR++GRSLLGVIFLVALGMIICWLVVIPK+PRLIVETGKV+ 
Sbjct: 1   MRSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIA 60

Query: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120
           HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL
Sbjct: 61  HSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVL 120

Query: 121 WSAVQVNFEYPFGYTEEINPELQFSAEVRYT 152
            SAVQVNFEYPFGYTEEINPELQFSAEV Y+
Sbjct: 121 SSAVQVNFEYPFGYTEEINPELQFSAEVSYS 151

BLAST of MELO3C004856.2 vs. TrEMBL
Match: tr|A0A1S3CGR5|A0A1S3CGR5_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103500709 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-46
Identity = 97/139 (69.78%), Postives = 114/139 (82.01%), Query Frame = 0

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GR LL VIFLV L M+ICWLVV PK PR +VETGKV+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKNPRFVVETGKVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
           AFTVK YNPNKRASIH+  MRMI+ +MG  FSSA+P F  TP NQTVL  AV VNF+YPF
Sbjct: 85  AFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMPMFMQTPGNQTVLSPAVDVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHREEINPELHFSAEISYS 163

BLAST of MELO3C004856.2 vs. TrEMBL
Match: tr|A0A0A0LVK9|A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-46
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 0

Query: 13  TKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLNATI 72
           TK+TR+IR++GRSLL VIFLV L M+ICWLVV PK PR+ VETG+V+ H+ST +MLNATI
Sbjct: 25  TKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRIFVETGRVIAHNSTHNMLNATI 84

Query: 73  AFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFEYPF 132
            FTVK YNPNKRAS+H+  MRMIV +MG  FSS IP+F  TP NQTVL  AV+VNF+YPF
Sbjct: 85  VFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFMQTPGNQTVLSPAVEVNFDYPF 144

Query: 133 GYTEEINPELQFSAEVRYT 152
           G+ EEINPEL FSAE+ Y+
Sbjct: 145 GHQEEINPELHFSAEISYS 163

BLAST of MELO3C004856.2 vs. TrEMBL
Match: tr|A0A1S3CGQ5|A0A1S3CGQ5_CUCME (uncharacterized protein LOC103500702 OS=Cucumis melo OX=3656 GN=LOC103500702 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-40
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 0

Query: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69
           HG  KRTR++R+ GR+LLG++ LVA+ MIICWL+V P+ P LIVETGKV+ HS T   LN
Sbjct: 24  HGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFPRNPDLIVETGKVIPHSLTDRKLN 83

Query: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFE 129
           ATIAFTV SYNPNK+ASI MD MRMIV +MG+ F S IPSFT  P+N+TVL S +Q NF 
Sbjct: 84  ATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWSDIPSFTQPPKNKTVLNSTIQGNFI 143

Query: 130 YPFGYTEE------INPELQFSAEVRY 151
           YPFG+ +E      I+P+L+FSA+V Y
Sbjct: 144 YPFGHMKELVKLEGISPDLRFSAKVSY 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008462348.14.4e-7498.68PREDICTED: protein YLS9-like [Cucumis melo][more]
XP_011654126.11.7e-7094.70PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus][more]
XP_011654134.12.9e-7094.04PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus] >KGN64866.1 hypothetic... [more]
XP_008462337.11.7e-4669.78PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo][more]
XP_011648454.11.7e-4669.06PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus] >KGN64867.1 hy... [more]
Match NameE-valueIdentityDescription
AT5G22870.12.0e-0434.52Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CGS4|A0A1S3CGS4_CUCME2.9e-7498.68protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1[more]
tr|A0A0A0LY09|A0A0A0LY09_CUCSA1.9e-7094.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132760 PE=4 SV=1[more]
tr|A0A1S3CGR5|A0A1S3CGR5_CUCME1.1e-4669.78NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103500709 PE=4 SV=1[more]
tr|A0A0A0LVK9|A0A0A0LVK9_CUCSA1.1e-4669.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132770 PE=4 SV=1[more]
tr|A0A1S3CGQ5|A0A1S3CGQ5_CUCME6.1e-4061.90uncharacterized protein LOC103500702 OS=Cucumis melo OX=3656 GN=LOC103500702 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004856.2.1MELO3C004856.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 25..127
NoneNo IPR availablePANTHERPTHR31852:SF1LATE EMBRYOGENESIS ABUNDANT LEA HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATEDcoord: 25..127

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004856.2Cla97C01G012890Watermelon (97103) v2medwmbB127
The following gene(s) are paralogous to this gene:

None