MELO3C004854.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004854.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description50S ribosomal protein L14, chloroplastic
Locationchr12 : 8772965 .. 8773141 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATAGACGATATGCTCATATTGGTGACATTATTGTTGTTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAATGACACTCACACAATAA

mRNA sequence

ATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATAGACGATATGCTCATATTGGTGACATTATTGTTGTTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAATGACACTCACACAATAA

Coding sequence (CDS)

ATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATAGACGATATGCTCATATTGGTGACATTATTGTTGTTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAATGACACTCACACAATAA

Protein sequence

MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLEMTLTQ
Homology
[Close]
BLAST of MELO3C004854.2 vs. NCBI nr
Match: YP_009439840.1 (ribosomal protein L14 (chloroplast) [Gynostemma laxiflorum] >ATG86679.1 ribosomal protein L14 (chloroplast) [Gynostemma laxiflorum])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. NCBI nr
Match: AXR94556.1 (ribosomal protein L14 (chloroplast) [Hodgsonia macrocarpa] >AXR94642.1 ribosomal protein L14 (chloroplast) [Hodgsonia macrocarpa] >AXR94726.1 ribosomal protein L14 (chloroplast) [Hodgsonia macrocarpa] >AXR94811.1 ribosomal protein L14 (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. NCBI nr
Match: AHM88831.1 (ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria] >AHM91189.1 ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. NCBI nr
Match: AHM88888.1 (ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. NCBI nr
Match: AHM91247.1 (ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TAIR10
Match: ATCG00780.1 (ribosomal protein L14)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIK+A+PNTPLE
Sbjct: 1  MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TAIR10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-05
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 2  IQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPN 50
          IQ  T+L V DNSGA+++MCI+ +    ++ A +GD IV  +K+A+PN
Sbjct: 48 IQMGTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPN 93

[Close]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match: sp|Q8WKP4|RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match: sp|A4QJF1|RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.4e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIK+A+PNTPLE
Sbjct: 1  MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match: sp|A4QJN5|RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.4e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIK+A+PNTPLE
Sbjct: 1  MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match: sp|P56792|RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.4e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIK+A+PNTPLE
Sbjct: 1  MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match: sp|A4QKE1|RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna OX=50458 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.4e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQT LNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIK+A+PNTPLE
Sbjct: 1  MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TrEMBL
Match: tr|A0A291IAG3|A0A291IAG3_9ROSI (50S ribosomal protein L14, chloroplastic OS=Gynostemma laxiflorum OX=2041848 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-20
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TrEMBL
Match: tr|X2F235|X2F235_LAGSI (50S ribosomal protein L14, chloroplastic (Fragment) OS=Lagenaria siceraria OX=3668 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-20
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TrEMBL
Match: tr|X2F6Z0|X2F6Z0_LAGSI (50S ribosomal protein L14, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-20
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TrEMBL
Match: tr|A0A286NG04|A0A286NG04_CUCME (50S ribosomal protein L14, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-20
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

[Close]
BLAST of MELO3C004854.2 vs. TrEMBL
Match: tr|A0A249RY33|A0A249RY33_CUCME (50S ribosomal protein L14, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.9e-20
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDIIVVVIKKAVPNTPLE 54
          MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGD+IV VIKKAVPNTPLE
Sbjct: 1  MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLE 53

The following BLAST results are available for this feature:
BLAST of MELO3C004854.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009439840.11.0e-1998.11ribosomal protein L14 (chloroplast) [Gynostemma laxiflorum] >ATG86679.1 ribosoma... [more]
AXR94556.11.4e-1996.23ribosomal protein L14 (chloroplast) [Hodgsonia macrocarpa] >AXR94642.1 ribosomal... [more]
AHM88831.11.4e-1996.23ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria] >AHM91189.1 r... [more]
AHM88888.11.4e-1996.23ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria][more]
AHM91247.11.4e-1996.23ribosomal protein L14, partial (chloroplast) [Lagenaria siceraria][more]
BLAST of MELO3C004854.2 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00780.13.5e-2290.57ribosomal protein L14[more]
AT5G46160.11.4e-0545.83Ribosomal protein L14p/L23e family protein[more]
BLAST of MELO3C004854.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8WKP4|RK14_CUCSA4.4e-2296.2350S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=... [more]
sp|A4QJF1|RK14_AETCO6.4e-2190.5750S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium OX=434059 GN=... [more]
sp|A4QJN5|RK14_AETGR6.4e-2190.5750S ribosomal protein L14, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=... [more]
sp|P56792|RK14_ARATH6.4e-2190.5750S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl1... [more]
sp|A4QKE1|RK14_BARVE6.4e-2190.5750S ribosomal protein L14, chloroplastic OS=Barbarea verna OX=50458 GN=rpl14 PE=... [more]
BLAST of MELO3C004854.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A291IAG3|A0A291IAG3_9ROSI6.8e-2098.1150S ribosomal protein L14, chloroplastic OS=Gynostemma laxiflorum OX=2041848 GN=... [more]
tr|X2F235|X2F235_LAGSI8.9e-2096.2350S ribosomal protein L14, chloroplastic (Fragment) OS=Lagenaria siceraria OX=36... [more]
tr|X2F6Z0|X2F6Z0_LAGSI8.9e-2096.2350S ribosomal protein L14, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl14... [more]
tr|A0A286NG04|A0A286NG04_CUCME8.9e-2096.2350S ribosomal protein L14, chloroplastic OS=Cucumis melo var. flexuosus OX=11207... [more]
tr|A0A249RY33|A0A249RY33_CUCME8.9e-2096.2350S ribosomal protein L14, chloroplastic OS=Cucumis melo subsp. agrestis OX=2176... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036853Ribosomal_L14_sf
IPR000218Ribosomal_L14P
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004854.2.1MELO3C004854.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 1..56
e-value: 2.6E-6
score: 22.2
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 1..50
e-value: 1.5E-18
score: 66.9
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 1..54
IPR036853Ribosomal protein L14 superfamilyGENE3DG3DSA:2.40.150.20coord: 1..56
e-value: 1.4E-19
score: 72.1
IPR036853Ribosomal protein L14 superfamilySUPERFAMILYSSF50193Ribosomal protein L14coord: 1..51
NoneNo IPR availablePANTHERPTHR11761:SF1750S RIBOSOMAL PROTEIN L14, CHLOROPLASTICcoord: 1..54

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004854.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004854.2Watermelon (97103) v2medwmbB127
MELO3C004854.2Wax gourdmedwgoB176
MELO3C004854.2Cucumber (Gy14) v2cgybmedB009
MELO3C004854.2Cucumber (Gy14) v1cgymedB361
MELO3C004854.2Cucurbita maxima (Rimu)cmamedB161
MELO3C004854.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004854.2Cucurbita moschata (Rifu)cmomedB151
MELO3C004854.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004854.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C004854.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C004854.2Wild cucumber (PI 183967)cpimedB011
MELO3C004854.2Cucumber (Chinese Long) v2cumedB010
MELO3C004854.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004854.2Watermelon (Charleston Gray)medwcgB127
MELO3C004854.2Watermelon (97103) v1medwmB158
MELO3C004854.2Watermelon (97103) v1medwmB165
MELO3C004854.2Silver-seed gourdcarmedB0174