MELO3C004853.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004853.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description30S ribosomal protein S3, chloroplastic
Locationchr12 : 8775812 .. 8777609 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGGCATTTTGGCCGAACCATGTATATCTTCTGCTTTTCTTCTTCTTCTTCTTCTTTAAACTACAATATGTTTTCTTCTCCTTTATTCAAAATAAGTTTCATTAAAACCTAGGGTTTGCAAAGAGGAAGAGGAGAAATACAAGGAGAGAAAGAAAAGGTAACTCTACTGTGTTTTTCCTTTCCTTTCACGTTTTCTTCTTTGTGCAAATTGATAAATAATAAAAGAAGGAGATTCTGCCATGTGTACGGTCAAAAAACAAATGCTTGTTGTAACGACCCAACTTTCCGGACTAAGCTGAGGTCACTACCAAATACCAAAACTCGACCATTCAACATAAAATTTAAAACGGACCGGNNNNNNNAAAAAAAAATCCTTTTGTGGGAAACCATTTATTAAAAAAAATAAATACGCTTAACACAAAGGGAGAAAAAGAAATAATAGTAACTTGGTCCCGAGCATCTACCATTATACCCACAATGATTGGGCATACTATTGCTATTCATAATGGAAAGGACCATTTGCCTGTTTATATAACGGATCGTATGGTAGGTCATAAATTGGGAGAATTCGCACCCACTCGCAATTTCCGGGGGCATGTGAAAAATGATAATAGACCTCGTCGTTAATAATTAATATTATGAAAAAAAAAGTGAATAGTGAATATAGATACCTATCGTTCATTACTAAGAGGTAAACCTTATGATAAAGAAGAGAAAAAAAAATCAATCTGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAACATGTTATGCAATTTTAAAATTGGTTTATTCGGCAGCAGCAAATGCTAGCCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAGGTCAATCAAGGTACTACTGTGAAAAAATTAAAACCTCGAGCTAGAGGGCGAAGTTATCCCATAAAACGACCCACTTGTTCTATAACTATTGTATTGAAAAATACATCTGTGAATAAAGAAGAATTTAAAAGAtACCAATACACCATAAACAAACCTGGTGGATTGATAACTAAAGAAAAGTACACAGATATGACGTGTTATGAGATGTATACTAATGGGGGATTATGGGACAAAAAATAAATCCACTCGGTTTTAGACTTGGTGCAACCCAAGGGCATCATTCTCTGTGGTTTGCACACCCCAAAAAATATTCTGAAGGTTTACAAGAAGATCAAAAAATACGAGATTGTATCCGGAATTATGTACAAAAAAACATGAGAATATTTTCTGGTGTTGAAGGAATTGCACGTATCGAGATTCAAAAAAGAATTGATCTTATTCAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGG

mRNA sequence

ATGGATGTAGGCATTTTGGCCGAACCATATACCTATCGTTCATTACTAAGAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAACATGTTATGCAATTTTAAAATTGGTTTATTCGGCAGCAGCAAATGCTAGCCACAATATGGGTTTCAACGAAAGAGATTTAGTCATTAGTAAAGCAGAGGTCAATCAAGAAGAATTTAAAAGAtACCAATACACCATAAACAAACCTGGTGGATTGATAACTAAAGAAAAGTACACAGATATGACGTGTTATGAGATGTATACTAATGGGGGATTATGGGACAAAAAATAAATCCACTCGGTTTTAGACTTGGTGCAACCCAAGGGCATCATTCTCTGTGGTTTGCACACCCCAAAAAATATTCTGAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGG

Coding sequence (CDS)

ATGGGACAAAAAATAAATCCACTCGGTTTTAGACTTGGTGCAACCCAAGGGCATCATTCTCTGTGGTTTGCACACCCCAAAAAATATTCTGAAGTGATAATCTTTATGGGATTCCCAAAGTTATTAATAGAAGGTGGGTCTCGAAAAATCGAAGAATTACAGATGAATGTACAAAAAGAATTAAATTCTGGGAACCGAAAACTTAACATTGCTATTACAAGAATAGGAAACCCTTATGGACACCCTAATATTCTCGCAGAATTTATAGCCGGACAATTAAAGAATAGAGTTTCATTTCGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGGGTACAAAGGGAATTCAAGTACAAATTGCCGGACGTATAGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGACGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGG

Protein sequence

MGQKINPLGFRLGATQGHHSLWFAHPKKYSEVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYG
Homology
[Close]
BLAST of MELO3C004853.2 vs. NCBI nr
Match: YP_009317424.1 (ribosomal protein S3 (chloroplast) [Coccinia grandis] >AOX48751.1 ribosomal protein S3 (chloroplast) [Coccinia grandis] >AOX48836.1 ribosomal protein S3 (chloroplast) [Coccinia grandis])

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDSIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. NCBI nr
Match: ASY96325.1 (ribosomal protein S3 (chloroplast) [Cucumis melo subsp. agrestis])

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. NCBI nr
Match: YP_004841822.1 (ribosomal protein S3 [Cucumis melo subsp. melo] >AEM76931.1 ribosomal protein S3 (chloroplast) [Cucumis melo subsp. melo] >ASY96412.1 ribosomal protein S3 (chloroplast) [Cucumis melo subsp. agrestis] >ASY96499.1 ribosomal protein S3 (chloroplast) [Cucumis melo subsp. agrestis] >ASY96586.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. conomon] >ASY96673.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. makuwa] >ASY96760.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. momordica] >ASY96847.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. dudaim] >ASY96934.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. cantalupo] >ASY97021.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. cantalupo] >ASY97108.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. inodorus] >ASY97195.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. cantalupo] >ASY97282.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. flexuosus] >ASY97369.1 ribosomal protein S3 (chloroplast) [Cucumis melo var. flexuosus])

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. NCBI nr
Match: YP_009456184.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88995.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89054.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89113.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89172.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89231.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89290.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89350.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89409.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89468.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89527.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89587.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89646.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89705.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89764.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89823.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89882.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM89941.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90000.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90059.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90118.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90177.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90236.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90354.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90413.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90472.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90531.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90590.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90649.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90708.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90767.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90826.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90885.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM90944.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91003.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91062.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM91295.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AUJ21949.1 ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 312.4 bits (799), Expect = 9.2e-82
Identity = 162/205 (79.02%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHP+KYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPQKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. NCBI nr
Match: AHM88764.1 (ribosomal protein S3 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 312.4 bits (799), Expect = 9.2e-82
Identity = 162/205 (79.02%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHP+KYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPQKYSEGLQEDQKIRDCXXXXXQKNMXXXXXXXXI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TAIR10
Match: ATCG00800.1 (structural constituent of ribosome)

HSP 1 Score: 273.9 bits (699), Expect = 6.6e-74
Identity = 145/205 (70.73%), Postives = 149/205 (72.68%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLG TQ HHSLWFA PKKYSE                             
Sbjct: 1   MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQKNIRISSGMEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        +II+MGFPKLLIE   R++EELQMNVQKELN  NRKLNIAITRI NP
Sbjct: 61  ARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match: sp|Q4VZN0|RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-82
Identity = 158/205 (77.07%), Postives = 161/205 (78.54%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIQNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKL+I+ GSRKIEELQ+NVQKE NSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match: sp|Q09WX9|RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica OX=248361 GN=rps3 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.7e-74
Identity = 148/205 (72.20%), Postives = 154/205 (75.12%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFA PK YSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAQPKNYSEDLQEDQKIRDCIKNYIKKNMKIFSSVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VII+MGFPKLLIE   +KIEELQMN+QKELNS NRKLN+AITRI NP
Sbjct: 61  ACIEIQKRIDLIQVIIYMGFPKLLIE--HQKIEELQMNIQKELNSVNRKLNMAITRIANP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQ+QIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQIQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match: sp|A0ZZ73|RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps3 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-73
Identity = 147/205 (71.71%), Postives = 151/205 (73.66%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLG TQ HHSLWFA PKKYSE                             
Sbjct: 1   MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLQEDKKIRDCIKNYVQKNTRLSSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VII+MGFPKLLIE   RK+EELQMNVQKELN  NRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match: sp|Q2L946|RR3_GOSHI (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps3 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-73
Identity = 147/205 (71.71%), Postives = 151/205 (73.66%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLG TQ HHSLWFA PKKYSE                             
Sbjct: 1   MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLQEDKKIRDCIKNYVQKNTRLSSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VII+MGFPKLLIE   RK+EELQMNVQKELN  NRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRLDLIQVIIYMGFPKLLIEDKPRKLEELQMNVQKELNCMNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match: sp|A4QL57|RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa OX=171822 GN=rps3 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.1e-73
Identity = 146/205 (71.22%), Postives = 150/205 (73.17%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLG TQ HHSLWFA PKKYSE                             
Sbjct: 1   MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQNNIRISSGMEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        +II+MGFPKLLIE   R+IEELQ+NVQKELN  NRKLNIAITRI NP
Sbjct: 61  ARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRIEELQINVQKELNCVNRKLNIAITRISNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TrEMBL
Match: tr|A0A249RXQ1|A0A249RXQ1_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TrEMBL
Match: tr|A0A286NFY0|A0A286NFY0_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TrEMBL
Match: tr|G3ETT6|G3ETT6_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TrEMBL
Match: tr|A0A249RZG7|A0A249RZG7_CUCMN (30S ribosomal protein S3, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

[Close]
BLAST of MELO3C004853.2 vs. TrEMBL
Match: tr|A0A249RXF6|A0A249RXF6_CUCME (30S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 163/205 (79.51%), Postives = 163/205 (79.51%), Query Frame = 0 

Query: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSE----------------------------- 60
           MGQKINPLGFRLGATQGHHSLWFAHPKKYSE                             
Sbjct: 1   MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIRNYVQKNMRIFSGVEGI 60

Query: 61  -------------VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120
                        VIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP
Sbjct: 61  ARIEIQKRIDLIQVIIFMGFPKLLIEGGSRKIEELQMNVQKELNSGNRKLNIAITRIGNP 120

Query: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 164
           YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR
Sbjct: 121 YGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIR 180

The following BLAST results are available for this feature:
BLAST of MELO3C004853.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009317424.13.2e-8279.51ribosomal protein S3 (chloroplast) [Coccinia grandis] >AOX48751.1 ribosomal prot... [more]
ASY96325.13.2e-8279.51ribosomal protein S3 (chloroplast) [Cucumis melo subsp. agrestis][more]
YP_004841822.13.2e-8279.51ribosomal protein S3 [Cucumis melo subsp. melo] >AEM76931.1 ribosomal protein S3... [more]
YP_009456184.19.2e-8279.02ribosomal protein S3 (chloroplast) [Lagenaria siceraria] >AHM88705.1 ribosomal p... [more]
AHM88764.19.2e-8279.02ribosomal protein S3 (chloroplast) [Lagenaria siceraria][more]
BLAST of MELO3C004853.2 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00800.16.6e-7470.73structural constituent of ribosome[more]
BLAST of MELO3C004853.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZN0|RR3_CUCSA2.8e-8277.0730S ribosomal protein S3, chloroplastic OS=Cucumis sativus OX=3659 GN=rps3 PE=3 ... [more]
sp|Q09WX9|RR3_MORIN3.7e-7472.2030S ribosomal protein S3, chloroplastic OS=Morus indica OX=248361 GN=rps3 PE=3 S... [more]
sp|A0ZZ73|RR3_GOSBA1.1e-7371.7130S ribosomal protein S3, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps3 ... [more]
sp|Q2L946|RR3_GOSHI1.1e-7371.7130S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps3 PE... [more]
sp|A4QL57|RR3_DRANE4.1e-7371.2230S ribosomal protein S3, chloroplastic OS=Draba nemorosa OX=171822 GN=rps3 PE=3... [more]
BLAST of MELO3C004853.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A249RXQ1|A0A249RXQ1_CUCME2.1e-8279.5130S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
tr|A0A286NFY0|A0A286NFY0_CUCME2.1e-8279.5130S ribosomal protein S3, chloroplastic OS=Cucumis melo var. flexuosus OX=112079... [more]
tr|G3ETT6|G3ETT6_CUCME2.1e-8279.5130S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN... [more]
tr|A0A249RZG7|A0A249RZG7_CUCMN2.1e-8279.5130S ribosomal protein S3, chloroplastic OS=Cucumis melo var. cantalupensis OX=36... [more]
tr|A0A249RXF6|A0A249RXF6_CUCME2.1e-8279.5130S ribosomal protein S3, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009019KH_sf_prok-type
IPR036419Ribosomal_S3_C_sf
IPR001351Ribosomal_S3_C
IPR005704Ribosomal_S3_bac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004853.2.1MELO3C004853.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005704Ribosomal protein S3, bacterialTIGRFAMTIGR01009TIGR01009coord: 31..163
e-value: 6.7E-48
score: 161.2
IPR005704Ribosomal protein S3, bacterialPANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3, CHLOROPLASTICcoord: 1..32
coord: 31..163
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 89..163
e-value: 4.9E-26
score: 91.0
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3DG3DSA:3.30.1140.32coord: 77..163
e-value: 2.1E-30
score: 106.9
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILYSSF54821Ribosomal protein S3 C-terminal domaincoord: 77..163
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 1..32
coord: 31..163
IPR009019K homology domain superfamily, prokaryotic typeSUPERFAMILYSSF54814Prokaryotic type KH domain (KH-domain type II)coord: 2..70

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004853.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004853.2Watermelon (97103) v2medwmbB127
MELO3C004853.2Wax gourdmedwgoB176
MELO3C004853.2Cucumber (Gy14) v2cgybmedB009
MELO3C004853.2Cucumber (Gy14) v1cgymedB361
MELO3C004853.2Cucurbita maxima (Rimu)cmamedB161
MELO3C004853.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004853.2Cucurbita moschata (Rifu)cmomedB151
MELO3C004853.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004853.2Cucurbita pepo (Zucchini)cpemedB563
MELO3C004853.2Cucurbita pepo (Zucchini)cpemedB880
MELO3C004853.2Wild cucumber (PI 183967)cpimedB011
MELO3C004853.2Cucumber (Chinese Long) v2cumedB010
MELO3C004853.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004853.2Watermelon (Charleston Gray)medwcgB127
MELO3C004853.2Watermelon (97103) v1medwmB158
MELO3C004853.2Watermelon (97103) v1medwmB165
MELO3C004853.2Silver-seed gourdcarmedB0174