MELO3C004823 (gene) Melon (DHL92) v3.5.1

NameMELO3C004823
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr12 : 9398981 .. 9399148 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATTGCGACGACATTGACGACATGGACGAGGGGGACTGCGTATACCCCATGACCACTGCTGCAGAAGATATTCAATACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAACTGAAACAATGTTGTCAGAATGGCAGTTGCGCAACACTTAG

mRNA sequence

ATGACAAATTGCGACGACATTGACGACATGGACGAGGGGGACTGCGTATACCCCATGACCACTGCTGCAGAAGATATTCAATACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAACTGAAACAATGTTGTCAGAATGGCAGTTGCGCAACACTTAG

Coding sequence (CDS)

ATGACAAATTGCGACGACATTGACGACATGGACGAGGGGGACTGCGTATACCCCATGACCACTGCTGCAGAAGATATTCAATACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAATTAACTGAAACAATGTTGTCAGAATGGCAGTTGCGCAACACTTAG

Protein sequence

MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLRNT*
BLAST of MELO3C004823 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLR 54
           MT C+D++D DEGD  Y  TTA+EDIQYIETTNEWSQW D+L  +M ++WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C004823 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.4e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLRN 55
           MT CDD+DD+DEGD  Y  TT  E+I YIE TNEWSQW D+L E+M ++WQLRN
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRN 195

BLAST of MELO3C004823 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLR 54
           MT C+D++D DEGD  Y  TTA+EDIQYIETTNEWSQW D+L  +M ++WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C004823 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSE 50
           MTNCDDIDD+DEG+  Y  T A EDI+YIETTNEWSQW D+L E +  E
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

BLAST of MELO3C004823 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLR 54
           MTN +D+ D++E D  Y  TT  ++IQYIETTNEW+QW DEL++ M  EWQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

BLAST of MELO3C004823 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1   MTNCDDIDDMDEGDCVYPMTTAAEDIQYIETTNEWSQWCDELTETMLSEWQLRN 55
           MTN D  D++DE D  +  TTAA+DI YIET+NEWSQW D+L E M ++W+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHA-TTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME2.5e-1364.15Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|9.4e-1464.81PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|3.6e-1364.15retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659126170|ref|XP_008463047.1|2.0e-1167.35PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|3.7e-1058.49PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|3.1e-0959.26PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU65683melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004823T1MELO3C004823T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU65683MU65683transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None