MELO3C004813 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004813
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Aspartate--tRNA(Asp/Asn) ligase
Location	chr12 : 9683689 .. 9684078 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAACGTTTGACAGAGGAAAGGATGGAAGGAACAGAGAAGGAAGTCCTGAGACTTGAAGAAATGATGCTGGAAATGAAGAAGTCTATGGATAGATTATCGGAAGAAATGAGAGAAAACCATAGCTACCGAAAGAGGGAAGAATCTGGTACTTCTGATTAATCCATGATGAAACTTAAAGGAAGAATAGAGGAGTTCGATGGTACTAATGTAGGAACTCAAAGGACAGTGGATCGAAGCAAATACAAGAAGTTGGAAATGCCAATGTTTCTTGGTGAAAACCCTGAATCATGGGTTCACCGTGCTCAACACTTCTTTAAGATCAACAACCTACCAGAAACGGAAAAAGTGAAAGTGGCTGTAGTGAGTTTCGGGAGAGCAAGATGA

mRNA sequence

ATGGCTCAACGTTTGACAGAGGAAAGGATGGAAGGAACAGAGAAGGAAGTCCTGAGACTTGAAGAAATGATGCTGGAAATGAAGAAGTCTATGGATAGATTATCGGAAGAAATGAGAGAAAACCATAGCTACCGAAAGAGGGAAGAATCTGGAACTCAAAGGACAGTGGATCGAAGCAAATACAAGAAGTTGGAAATGCCAATGTTTCTTGGTGAAAACCCTGAATCATGGGTTCACCGTGCTCAACACTTCTTTAAGATCAACAACCTACCAGAAACGGAAAAAGTGAAAGTGGCTGTAGTGAGTTTCGGGAGAGCAAGATGA

Coding sequence (CDS)

ATGGCTCAACGTTTGACAGAGGAAAGGATGGAAGGAACAGAGAAGGAAGTCCTGAGACTTGAAGAAATGATGCTGGAAATGAAGAAGTCTATGGATAGATTATCGGAAGAAATGAGAGAAAACCATAGCTACCGAAAGAGGGAAGAATCTGGAACTCAAAGGACAGTGGATCGAAGCAAATACAAGAAGTTGGAAATGCCAATGTTTCTTGGTGAAAACCCTGAATCATGGGTTCACCGTGCTCAACACTTCTTTAAGATCAACAACCTACCAGAAACGGAAAAAGTGAAAGTGGCTGTAGTGAGTTTCGGGAGAGCAAGATGA

Protein sequence

MAQRLTEERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQRTVDRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVSFGRAR*

Homology

[Close]

BLAST of MELO3C004813 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1


Query: 1   MAQRLTEERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQRTVDRSK 60
           MAQ+  E+R+   EKE+  ++EMML + KSM+  S+  RE  +        T  + DRSK
Sbjct: 1   MAQKEWEDRLNMNEKEIREMKEMMLNLLKSME--SDGGRETET----TPGFTVGSSDRSK 60

Query: 61  YKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVSFG 105
           YKKLE+P+F GENPE+W++RA+H+F IN L + EKVKVAVVSFG
Sbjct: 61  YKKLEIPVFNGENPETWIYRAEHYFDINELVDEEKVKVAVVSFG 98

[Close]

BLAST of MELO3C004813 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-07
Identity = 24/46 (52.17%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 57  DRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVS 103
           DR K+KKLEMP+F GE+P+ W+++A+++F+++ L E EK+K+A+VS
Sbjct: 92  DRIKFKKLEMPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVS 137

[Close]

BLAST of MELO3C004813 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 14  EKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQRTVDRSKYKKLEMPMFLGEN 73
           E+   +L E + ++++  D   +E REN         G  R     + KKL++P+F G N
Sbjct: 52  ERATQQLREEVAKIQERGDERRDERRENDDGEGEGFGGGFRGGGSWRAKKLDLPVFSGNN 111

Query: 74  PESWVHRAQHFFKINNLPETEKVKVAVVS 103
           P+ W+ RA+ FF+   L E EKV+ AVVS
Sbjct: 112 PDGWIIRAERFFQFYRLTEDEKVEAAVVS 140

[Close]

BLAST of MELO3C004813 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 8.3e-35
Identity = 81/127 (63.78%), Postives = 93/127 (73.23%), Query Frame = 1


Query: 1   MAQRLTEERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGT-------- 60
           MAQR  EER+EGTEKEVL L+EMM EMKK+M+RL+EEMRE+  Y+K+EESGT        
Sbjct: 1   MAQRQVEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKL 60

Query: 61  --------------QRTVDRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKV 106
                           TVDRSKYKKLEMPMFLGENPESWV+R +HFF+INNL E EKVKV
Sbjct: 61  KGKMEELDVTAEVNTNTVDRSKYKKLEMPMFLGENPESWVYRVEHFFEINNLSEAEKVKV 120

[Close]

BLAST of MELO3C004813 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 78/127 (61.42%), Postives = 96/127 (75.59%), Query Frame = 1


Query: 1   MAQRLTEERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQ------- 60
           MAQR  E+ ++GTEKE++ L+EM+LEMKK+M+R++E +RENHSY++REESGT        
Sbjct: 1   MAQRQIEDIVDGTEKEIMVLKEMLLEMKKAMERMAEVLRENHSYKRREESGTSDGSVMKL 60

Query: 61  ---------------RTVDRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKV 106
                             DRSKYKKLEMPMFLGENPESWV+RA+HFF+INNLPETEKVKV
Sbjct: 61  KGKAEETDVHNEGNLTMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKV 120

[Close]

BLAST of MELO3C004813 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 79/127 (62.20%), Postives = 93/127 (73.23%), Query Frame = 1


Query: 1   MAQRLTEERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQ------- 60
           MAQR  EER+EG +KEVL L++MMLEMKK+MDRL++E+REN SY+K+EES T        
Sbjct: 1   MAQRQMEERLEGMKKEVLSLKKMMLEMKKNMDRLADELRENQSYKKKEESDTSDGSIMKM 60

Query: 61  ---------------RTVDRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKV 106
                            VDRSKYKKLEMPMF GENPES V+RA+HFF+INNLPE EKVKV
Sbjct: 61  KGKMEETDITTEVNTNLVDRSKYKKLEMPMFFGENPESCVYRAEHFFEINNLPEAEKVKV 120

[Close]

BLAST of MELO3C004813 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32
Identity = 78/121 (64.46%), Postives = 90/121 (74.38%), Query Frame = 1


Query: 7   EERMEGTEKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREESGTQ------------- 66
           EER+EGTEKEVL L+EMMLEMKKSMDRL++E+R+  SY+K+EESGT              
Sbjct: 2   EERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQ-SYKKKEESGTSDGSIMKMKGKMEE 61

Query: 67  ---------RTVDRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVSFG 106
                       DRSKYKKLEMPMFLGENPESWV+RA+HFF+INNL E EKVKVAVVSFG
Sbjct: 62  TDLTGEVNTHLADRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLLEAEKVKVAVVSFG 121

[Close]

BLAST of MELO3C004813 vs. NCBI nr
Match: gi|659115482|ref|XP_008457581.1| (PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 6.4e-19
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 1


Query: 14  EKEVLRLEEMMLEMKKSMDRLSEEMRENHSYRKREES-----------GTQRTVD----- 73
           EKE+  L+EMML + KSM+ LSEE++E++  R REES           G     D     
Sbjct: 3   EKEIRELKEMMLSLFKSMENLSEEIKESNRARLREESCASEGSRLKGKGNVGETDMTLGF 62

Query: 74  ------RSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVSFG 105
                 +SKYKKLEMP+F GENP+SW++R +H+F+IN L + EKVKVAVVSFG
Sbjct: 63  AEGSSKKSKYKKLEMPVFNGENPKSWIYRVEHYFEINKLADEEKVKVAVVSFG 115

The following BLAST results are available for this feature:

BLAST of MELO3C004813 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCI2_CUCME	1.0e-18	51.92	Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GC35_CUCME	6.7e-07	52.17	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E2DMZ5_BETVU	1.9e-06	35.96	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]

BLAST of MELO3C004813 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112485\|ref\|XP_008456244.1\|	8.3e-35	63.78	PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo]	[more]
gi\|778697580\|ref\|XP_011654353.1\|	1.4e-34	61.42	PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus]	[more]
gi\|659093726\|ref\|XP_008447685.1\|	2.1e-33	62.20	PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo]	[more]
gi\|659093928\|ref\|XP_008447791.1\|	3.0e-32	64.46	PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo]	[more]
gi\|659115482\|ref\|XP_008457581.1\|	6.4e-19	49.56	PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004813T1	MELO3C004813T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..40 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004813	Cucumber (Gy14) v2	cgybmeB010
MELO3C004813	Silver-seed gourd	carmeB0171
MELO3C004813	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004813	Watermelon (97103) v2	mewmbB143
MELO3C004813	Wax gourd	mewgoB174
MELO3C004813	Cucumber (Gy14) v1	cgymeB365
MELO3C004813	Cucurbita maxima (Rimu)	cmameB148
MELO3C004813	Cucurbita maxima (Rimu)	cmameB194
MELO3C004813	Cucurbita moschata (Rifu)	cmomeB138
MELO3C004813	Cucurbita moschata (Rifu)	cmomeB181
MELO3C004813	Wild cucumber (PI 183967)	cpimeB011
MELO3C004813	Cucumber (Chinese Long) v2	cumeB015
MELO3C004813	Watermelon (Charleston Gray)	mewcgB141
MELO3C004813	Watermelon (97103) v1	mewmB161
MELO3C004813	Cucurbita pepo (Zucchini)	cpemeB480
MELO3C004813	Cucurbita pepo (Zucchini)	cpemeB745
MELO3C004813	Bottle gourd (USVL1VR-Ls)	lsimeB244