MELO3C004808.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004808.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DUF825 domain-containing protein
Location	chr12 : 9778648 .. 9778951 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATAACTTGTATCCATGTGCTTCATATTCACTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACTTCCTCACGTCAATCCCACGAGCCCCTTATCCATTCGCATTCGATCACGGCAGAGGAGCACGTCAAAATAGAAAAACTCAACTGGGTTTAGGGATAAGCATGCTTCAACTGATGACTTCCACCACGTCAAGGCGACACTCTACCACTAAGTTATATCCATTCCCTTGCCCCCATCGAGAAATAGTACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACACCACTATTCTTGA

mRNA sequence

GCATAACTTGTATCCATGTGCTTCATATTCACTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACTTCCTCACGTCAATCCCACGAGCCCCTTATCCATTCGCATTCGATCACGGCAGAGGAGCACGTCAAAATAGAAAAACTCAACTGGGTTTAGGGATAAGCATGCTTCAACTGATGACTTCCACCACGTCAAGGCGACACTCTACCACTAAGTTATATCCATTCCCTTGCCCCCATCGAGAAATAGTACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACACCACTATTCTTGA

Coding sequence (CDS)

CATAACTTGTATCCATGTGCTTCATATTCACTTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACTTCCTCACGTCAATCCCACGAGCCCCTTATCCATTCGCATTCGATCACGGCAGAGGAGCACGTCAAAATAGAAAAACTCAACTGGGTTTAGGGATAAGCATGCTTCAACTGATGACTTCCACCACGTCAAGGCGACACTCTACCACTAAGTTATATCCATTCCCTTGCCCCCATCGAGAAATAGTACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACACCACTATTCTTGA

Protein sequence

HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLMTSTTSRRHSTTKLYPFPCPHREIVLTNPKAKGRETQHHYS

Homology

[Close]

BLAST of MELO3C004808.2 vs. NCBI nr
Match: PPR83387.1 (hypothetical protein GOBAR_AA37329 [Gossypium barbadense])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCASYS GVRSQKYSHP+ LTSIPRA YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 202 HNLYPCASYSPGVRSQKYSHPYPLTSIPRASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 261

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 262 TSTTSR 267

[Close]

BLAST of MELO3C004808.2 vs. NCBI nr
Match: AVP27573.1 (hypothetical protein (mitochondrion) [Helianthus annuus])

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 2  NLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLMT 61
          NLYPCASYS GVRSQKYSHP  LTSIPRA YPF+F+HG  A QN K  LGLGI  L+LMT
Sbjct: 28 NLYPCASYSPGVRSQKYSHPCPLTSIPRASYPFSFNHGGVANQNEKLTLGLGIIRLELMT 87

Query: 62 STTSR 67
          STTSR
Sbjct: 88 STTSR 92

[Close]

BLAST of MELO3C004808.2 vs. NCBI nr
Match: PPD67180.1 (hypothetical protein GOBAR_DD35945 [Gossypium barbadense])

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCA YS GVRSQKYSHP+ LTSIPRA YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 146 HNLYPCALYSPGVRSQKYSHPYPLTSIPRASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 205

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 206 TSTTSR 211

[Close]

BLAST of MELO3C004808.2 vs. NCBI nr
Match: PPS09416.1 (hypothetical protein GOBAR_AA11227 [Gossypium barbadense])

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCA YS GVRSQKYSHP+ LTSIP+A YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 288 HNLYPCALYSPGVRSQKYSHPYPLTSIPQASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 347

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 348 TSTTSR 353

[Close]

BLAST of MELO3C004808.2 vs. NCBI nr
Match: KGN44549.1 (hypothetical protein Csa_7G329345 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLG 52
          HNLYPCASYS GVRSQKY+HPH L SIPRA YPF+FDH  GA QNRKT +G
Sbjct: 27 HNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPFSFDHCEGASQNRKTHIG 77

[Close]

BLAST of MELO3C004808.2 vs. TrEMBL
Match: tr|A0A2P5VX61|A0A2P5VX61_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.6e-19
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCASYS GVRSQKYSHP+ LTSIPRA YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 202 HNLYPCASYSPGVRSQKYSHPYPLTSIPRASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 261

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 262 TSTTSR 267

[Close]

BLAST of MELO3C004808.2 vs. TrEMBL
Match: tr|A0A2P1MA84|A0A2P1MA84_HELAN (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=orf279 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 2  NLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLMT 61
          NLYPCASYS GVRSQKYSHP  LTSIPRA YPF+F+HG  A QN K  LGLGI  L+LMT
Sbjct: 28 NLYPCASYSPGVRSQKYSHPCPLTSIPRASYPFSFNHGGVANQNEKLTLGLGIIRLELMT 87

Query: 62 STTSR 67
          STTSR
Sbjct: 88 STTSR 92

[Close]

BLAST of MELO3C004808.2 vs. TrEMBL
Match: tr|A0A2P5PXZ6|A0A2P5PXZ6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35945 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCA YS GVRSQKYSHP+ LTSIPRA YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 146 HNLYPCALYSPGVRSQKYSHPYPLTSIPRASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 205

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 206 TSTTSR 211

[Close]

BLAST of MELO3C004808.2 vs. TrEMBL
Match: tr|A0A2P5Y1J4|A0A2P5Y1J4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLGLGISMLQLM 60
           HNLYPCA YS GVRSQKYSHP+ LTSIP+A YPF FDHG G  +  K  LGLGI  L+LM
Sbjct: 288 HNLYPCALYSPGVRSQKYSHPYPLTSIPQASYPFLFDHGGGQGKIEKLTLGLGIIRLELM 347

Query: 61  TSTTSR 67
           TSTTSR
Sbjct: 348 TSTTSR 353

[Close]

BLAST of MELO3C004808.2 vs. TrEMBL
Match: tr|A0A0A0K6M9|A0A0A0K6M9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  HNLYPCASYSLGVRSQKYSHPHFLTSIPRAPYPFAFDHGRGARQNRKTQLG 52
          HNLYPCASYS GVRSQKY+HPH L SIPRA YPF+FDH  GA QNRKT +G
Sbjct: 27 HNLYPCASYSPGVRSQKYNHPHPLKSIPRASYPFSFDHCEGASQNRKTHIG 77

The following BLAST results are available for this feature:

BLAST of MELO3C004808.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR83387.1	1.2e-18	75.76	hypothetical protein GOBAR_AA37329 [Gossypium barbadense]	[more]
AVP27573.1	4.4e-18	76.92	hypothetical protein (mitochondrion) [Helianthus annuus]	[more]
PPD67180.1	5.7e-18	74.24	hypothetical protein GOBAR_DD35945 [Gossypium barbadense]	[more]
PPS09416.1	1.7e-17	72.73	hypothetical protein GOBAR_AA11227 [Gossypium barbadense]	[more]
KGN44549.1	7.7e-15	78.43	hypothetical protein Csa_7G329345 [Cucumis sativus]	[more]

BLAST of MELO3C004808.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004808.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004808.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5VX61\|A0A2P5VX61_GOSBA	7.6e-19	75.76	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV...	[more]
tr\|A0A2P1MA84\|A0A2P1MA84_HELAN	2.9e-18	76.92	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=orf279 PE=4 SV=1	[more]
tr\|A0A2P5PXZ6\|A0A2P5PXZ6_GOSBA	3.8e-18	74.24	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35945 PE=4 SV...	[more]
tr\|A0A2P5Y1J4\|A0A2P5Y1J4_GOSBA	1.1e-17	72.73	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11227 PE=4 SV...	[more]
tr\|A0A0A0K6M9\|A0A0A0K6M9_CUCSA	5.1e-15	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G329345 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004808.2.1	MELO3C004808.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004808.2	Silver-seed gourd	carmedB0174
MELO3C004808.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004808.2	Watermelon (97103) v2	medwmbB132
MELO3C004808.2	Wax gourd	medwgoB176
MELO3C004808.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004808.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004808.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C004808.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004808.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C004808.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004808.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004808.2	Cucurbita pepo (Zucchini)	cpemedB881
MELO3C004808.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004808.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004808.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004808.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004808.2	Watermelon (97103) v1	medwmB157