MELO3C004805.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004805.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UBN2 domain-containing protein
Location	chr12 : 9876050 .. 9876295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATGAGATCATTATGAAGGAGCACTTGGAGGATAGGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTATCTCTTGAAAGTTGATCCCGAAGATGAGGATAGCCTTGATGAAGATGACATTGCTTATTTTTCACTTAAGTACAAAAATTTCATAAAAAATAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAGCAAAAAGAATGAGAAATTGA

mRNA sequence

ATGGCTCATGAGATCATTATGAAGGAGCACTTGGAGGATAGGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTATCTCTTGAAAGTTGATCCCGAAGATGAGGATAGCCTTGATGAAGATGACATTGCTTATTTTTCACTTAAGTACAAAAATTTCATAAAAAATAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAGCAAAAAGAATGAGAAATTGA

Coding sequence (CDS)

ATGGCTCATGAGATCATTATGAAGGAGCACTTGGAGGATAGGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTATCTCTTGAAAGTTGATCCCGAAGATGAGGATAGCCTTGATGAAGATGACATTGCTTATTTTTCACTTAAGTACAAAAATTTCATAAAAAATAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAGCAAAAAGAATGAGAAATTGA

Protein sequence

MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKYFKKHLSTQKESKGEKAKRMRN

Homology

[Close]

BLAST of MELO3C004805.2 vs. NCBI nr
Match: XP_011648465.1 (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus] >XP_011658429.1 PREDICTED: uncharacterized protein LOC105434435 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKY 60
           M HEIIMKEHLED SKKKKSIALKTI  L+VDPEDED LDEDDIAYFS KYKNFIK KKY
Sbjct: 211 MTHEIIMKEHLEDESKKKKSIALKTI-SLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKY 270

Query: 61  FKKHLSTQKESKGEKAKR 79
           FKKHLSTQKESKGEK+K+
Sbjct: 271 FKKHLSTQKESKGEKSKK 287

[Close]

BLAST of MELO3C004805.2 vs. NCBI nr
Match: XP_011652782.1 (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKY 60
           M HEIIMKEHLED SKKKKSIALKTI  L+VDPEDED LDEDDIAYFS KYKNFIK KKY
Sbjct: 211 MTHEIIMKEHLEDESKKKKSIALKTI-SLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKY 270

Query: 61  FKKHLSTQKESKGEKAKR 79
           FKKHLSTQKESKGEK+K+
Sbjct: 271 FKKHLSTQKESKGEKSKK 287

[Close]

BLAST of MELO3C004805.2 vs. NCBI nr
Match: XP_011656224.1 (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKY 60
           M HEIIMKEHLED SKKKKSIALKTI  L+VDPEDED LDEDDIAYFS KYKNFIK KKY
Sbjct: 144 MTHEIIMKEHLEDESKKKKSIALKTI-SLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKY 203

Query: 61  FKKHLSTQKESKGEKAKR 79
           FKKHLSTQKESKGEK+K+
Sbjct: 204 FKKHLSTQKESKGEKSKK 220

[Close]

BLAST of MELO3C004805.2 vs. NCBI nr
Match: XP_011659859.1 (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKY 60
           M HEIIMKEHLED SKKKKSIALKTI  L+VDPEDED LDEDDIAYFS KYKNFIK KKY
Sbjct: 211 MTHEIIMKEHLEDESKKKKSIALKTI-SLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKY 270

Query: 61  FKKHLSTQKESKGEKAKR 79
           FKKHLSTQKESKGEK+K+
Sbjct: 271 FKKHLSTQKESKGEKSKK 287

[Close]

BLAST of MELO3C004805.2 vs. NCBI nr
Match: XP_011659862.1 (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.1e-26
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MAHEIIMKEHLEDRSKKKKSIALKTIYLLKVDPEDEDSLDEDDIAYFSLKYKNFIKNKKY 60
           M HEIIMKEHLED SKKKKSIALKTI  L+VDPEDED LDEDDIAYFS KYKNFIK KKY
Sbjct: 181 MTHEIIMKEHLEDESKKKKSIALKTI-SLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKY 240

Query: 61  FKKHLSTQKESKGEKAKR 79
           FKKHLSTQKESKGEK+K+
Sbjct: 241 FKKHLSTQKESKGEKSKK 257

The following BLAST results are available for this feature:

BLAST of MELO3C004805.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648465.1	6.1e-26	87.18	PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus] >XP_011658429....	[more]
XP_011652782.1	6.1e-26	87.18	PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus]	[more]
XP_011656224.1	6.1e-26	87.18	PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus]	[more]
XP_011659859.1	6.1e-26	87.18	PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]	[more]
XP_011659862.1	6.1e-26	87.18	PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus]	[more]

BLAST of MELO3C004805.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004805.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004805.2 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004805.2.1	MELO3C004805.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004805.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004805.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004805.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C004805.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004805.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C004805.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004805.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004805.2	Cucurbita pepo (Zucchini)	cpemedB881
MELO3C004805.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004805.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004805.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004805.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004805.2	Watermelon (97103) v1	medwmB157
MELO3C004805.2	Silver-seed gourd	carmedB0174
MELO3C004805.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004805.2	Watermelon (97103) v2	medwmbB132
MELO3C004805.2	Wax gourd	medwgoB176