MELO3C004802.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004802.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DUF4283 domain protein
Location	chr12 : 9916977 .. 9917408 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

mRNA sequence

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Coding sequence (CDS)

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Protein sequence

METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIKDDNGHLFFVQAVTHENGK

Homology

[Close]

BLAST of MELO3C004802.2 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 169.5 bits (428), Expect = 8.4e-39
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802.2 vs. NCBI nr
Match: KGN47664.1 (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802.2 vs. NCBI nr
Match: KGN51135.1 (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802.2 vs. NCBI nr
Match: XP_022149859.1 (uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncharacterized protein LOC111018186 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E+S+  +PF ADKA++       A LL  N  W T G   V+ E W+   H    L PSY
Sbjct: 73  ESSYIINPFQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKLEAWNPLLHGRAFLFPSY 132

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           G WV  R IPL  W   TF  IGNA  GF+D            +  IK++ NY  FIP  
Sbjct: 133 GNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIKVKSNYCGFIPAE 192

Query: 122 ISIKDDNGHLFF-VQAVTHENGK 144
           IS  D  G L F  + V+ E+ K
Sbjct: 193 ISSMD--GPLCFQAKVVSFEDSK 213

[Close]

BLAST of MELO3C004802.2 vs. NCBI nr
Match: XP_016902104.1 (PREDICTED: uncharacterized protein LOC107991539 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 39  SFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETK 98
           +FYV+FE WS   +A P  + SY  W  FR IPL A   +T  QI  AC GF++VAKET 
Sbjct: 3   TFYVKFESWSKDLYAKPKFILSYCRWNRFRDIPLHARNLNTLKQIEEACGGFIEVAKETI 62

Query: 99  TRKNLVEARIKIRYNYSSFIPTNISIKDDNG 130
            +  L+EA IKI  NY+ FI  NI I D+ G
Sbjct: 63  EKSELIEALIKIEENYTGFILANIKIIDEEG 93

[Close]

BLAST of MELO3C004802.2 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.6e-39
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802.2 vs. TrEMBL
Match: tr|A0A0A0KFP0|A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.3e-35
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802.2 vs. TrEMBL
Match: tr|A0A0A0KNC5|A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802.2 vs. TrEMBL
Match: tr|A0A1S4E1K3|A0A1S4E1K3_CUCME (uncharacterized protein LOC107991539 OS=Cucumis melo OX=3656 GN=LOC107991539 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 39  SFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETK 98
           +FYV+FE WS   +A P  + SY  W  FR IPL A   +T  QI  AC GF++VAKET 
Sbjct: 3   TFYVKFESWSKDLYAKPKFILSYCRWNRFRDIPLHARNLNTLKQIEEACGGFIEVAKETI 62

Query: 99  TRKNLVEARIKIRYNYSSFIPTNISIKDDNG 130
            +  L+EA IKI  NY+ FI  NI I D+ G
Sbjct: 63  EKSELIEALIKIEENYTGFILANIKIIDEEG 93

[Close]

BLAST of MELO3C004802.2 vs. TrEMBL
Match: tr|A0A251PS99|A0A251PS99_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G281000 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 38/127 (29.92%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSF-KKHAAPILVP 60
           +E +    P+  ++A  +    T+A  +C++ + +  G   V    W    K+  P +V 
Sbjct: 234 LEKNVILFPYQINRAFFSCDSKTEALKVCSSGKLAVEGQTDVLLYSWEHGLKNNIPKIV- 293

Query: 61  SYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIP 120
           SYGGW+   G+P+  W  + F +IG  C G L V + T+    L EARIK R N+  F+P
Sbjct: 294 SYGGWIGINGLPMHWWNKEFFQRIGLECGGLLQVDQRTENYLYLFEARIKTRKNFIGFLP 353

Query: 121 TNISIKD 127
             +++ +
Sbjct: 354 EILTLTE 359

The following BLAST results are available for this feature:

BLAST of MELO3C004802.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33672.1	8.4e-39	48.25	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN47664.1	1.3e-34	44.29	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
KGN51135.1	2.5e-22	41.46	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
XP_022149859.1	1.3e-18	39.16	uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncha...	[more]
XP_016902104.1	6.5e-15	49.45	PREDICTED: uncharacterized protein LOC107991539 [Cucumis melo]	[more]

BLAST of MELO3C004802.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004802.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004802.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GB30\|E5GB30_CUCME	5.6e-39	48.25	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KFP0\|A0A0A0KFP0_CUCSA	8.3e-35	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367105 PE=4 SV=1	[more]
tr\|A0A0A0KNC5\|A0A0A0KNC5_CUCSA	1.6e-22	41.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=4 SV=1	[more]
tr\|A0A1S4E1K3\|A0A1S4E1K3_CUCME	4.3e-15	49.45	uncharacterized protein LOC107991539 OS=Cucumis melo OX=3656 GN=LOC107991539 PE=...	[more]
tr\|A0A251PS99\|A0A251PS99_PRUPE	3.2e-10	29.92	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G281000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004802.2.1	MELO3C004802.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 14..110 e-value: 5.7E-12 score: 45.3
None	No IPR available	PANTHER	PTHR34427	FAMILY NOT NAMED	coord: 64..128

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004802.2	Silver-seed gourd	carmedB0174
MELO3C004802.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004802.2	Watermelon (97103) v2	medwmbB132
MELO3C004802.2	Wax gourd	medwgoB176
MELO3C004802.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004802.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004802.2	Cucurbita maxima (Rimu)	cmamedB161
MELO3C004802.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004802.2	Cucurbita moschata (Rifu)	cmomedB151
MELO3C004802.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C004802.2	Cucurbita pepo (Zucchini)	cpemedB563
MELO3C004802.2	Cucurbita pepo (Zucchini)	cpemedB881
MELO3C004802.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004802.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004802.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004802.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004802.2	Watermelon (97103) v1	medwmB157